View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12323_low_4 (Length: 399)
Name: NF12323_low_4
Description: NF12323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12323_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 36655649 - 36655281
Alignment:
| Q |
15 |
gacaactggaacaaaaccccagccaccaaatatgggtctcataaagttatcatcaaattgcctccaaaagtagtgaactgtagtagcaggataacgcatc |
114 |
Q |
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| T |
36655649 |
gacaactggaacaaaaccccagccaccaaatatgggtctcataaagttatcatcaaattgcctccaaaagtagtgaactgtagtagcaggataacgcatc |
36655550 |
T |
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| Q |
115 |
atccacctcaggaatggctgattgttgctttgttcaatggaatcattactttcaagaaataataatcccagctcctcatgataatcggcggaatcagaag |
214 |
Q |
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| T |
36655549 |
atccacctcaggaatggctgattgttgctttgttctatggaatcattactttcaagaaataataatcccagctcctcatgataatcggcggaatcagaag |
36655450 |
T |
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| Q |
215 |
ttgtttgttttgaatgctttagtagcacggcctcaattagaggttttgttatggaaccaaatacctgtttgcaatggaagctgccttatcagtatttgca |
314 |
Q |
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| T |
36655449 |
ttgtttgttttgaatgctttagtagcacggcctcaattagaggttttgttatggaaccaaatacctgtttgcaatggaagctgccttatcagtatttgca |
36655350 |
T |
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| Q |
315 |
attcatattagagattaattttgatgcagtgtcaatgtaaaaaattgacactgtcagccaaatataaat |
383 |
Q |
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| T |
36655349 |
attcatattagagattaattttgatgcagtgtcaatgtaaaaaattgacactgtcagccaattataaat |
36655281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 36650741 - 36650631
Alignment:
| Q |
16 |
acaactggaacaaaaccccagccaccaaatatgggtctcataaagttatcatcaaattgcctccaaaagtagtgaactgtagtagcaggataacgcatca |
115 |
Q |
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| T |
36650741 |
acaactggaacaaaacctctaccaccaaatacaggtctcataaacttatcatcgaatttcctccaaaagtagtgaacggtagtagtaggataacgcatca |
36650642 |
T |
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| Q |
116 |
tccacctcagg |
126 |
Q |
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| T |
36650641 |
tcaaactcagg |
36650631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 36650555 - 36650455
Alignment:
| Q |
187 |
tcctcatgataatcggcggaatcagaagttgtttgttttgaatgctttagtagcacggcctcaattagaggttttgttatggaaccaaatacctgtttgc |
286 |
Q |
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||||| |||| ||||| |||||||||| | | | ||||||||||||||| ||| |||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
36650555 |
tcctcttgattatcggtggaatcagaaatggctggttttgaatgctttaagttcacagcctcaatcaaaggctttgttatggaaccaaatacctgtttgc |
36650456 |
T |
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| Q |
287 |
a |
287 |
Q |
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| T |
36650455 |
a |
36650455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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