View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12324_high_3 (Length: 331)

Name: NF12324_high_3
Description: NF12324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12324_high_3
NF12324_high_3
[»] chr1 (1 HSPs)
chr1 (14-331)||(29736382-29736699)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 29736699 - 29736382
Alignment:
Q  14 atataatatacatagcataagattaagattaagatatagactcaattcattcaaatcaagcaacaaaaatttaagctccacacaaattaatcttagtttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29736699 atataatatacatagcataagattaagattaagatatagactcaattcattcaaatcaagcaacaaaaatttaagctccacacaaattaatcttagtttt 29736600  T
Q  114 aatttgctcactatgttctggatcagctaactagcttcaatagtaagttgttcattttttagaatttaattactatttctacttgatactttaattttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29736599 aatttgctcactatgttctggatcagctaactagcttcaatagtaagttgttcattttttagaatttaattactatttctacttgatactttaattttaa 29736500  T
Q  214 ttgcttgttatttgtttccttttcagttcaattcaactaaacagaagcgaagcaaaatgaattaccatgttccagatttcgatattcaaatggatgatga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29736499 ttgcttgttatttgtttccttttcagttcaattcaactaaacagaagcgaagcaaaatgaattaccatgttccagatttcgatattcaaatggatgatga 29736400  T
Q  314 agatgaataccctataca 331  Q
    ||||||||||||||||||    
T  29736399 agatgaataccctataca 29736382  T

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