View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12325_high_1 (Length: 642)
Name: NF12325_high_1
Description: NF12325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12325_high_1 |
 | |
|
| [»] scaffold0283 (1 HSPs) |
| | |
|
| [»] scaffold0133 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 2798184 - 2798448
Alignment:
| Q |
17 |
gctctagataccaattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798184 |
gctctagataccaattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctga |
2798283 |
T |
|
| Q |
117 |
taattcaaactgaacatacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctata |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
2798284 |
taattcaaactgaacatacacacctcttttacatagtttaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaactgta |
2798383 |
T |
|
| Q |
217 |
caacagttactaaaataaaaacagacaacacacacatcagcaatcctaagcatgatatttaacat |
281 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2798384 |
cagcagttactaaaataaaaacagacaacacacacatcagcagtcctaagcatgatatttaacat |
2798448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 6839380 - 6839639
Alignment:
| Q |
23 |
gataccaattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6839380 |
gataccaattgttgttaattgaacaagaaaacagttgcagagaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattc |
6839479 |
T |
|
| Q |
123 |
aaactgaacatacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaatt--nnnnnnnnctatacaac |
220 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| | |
|
|
| T |
6839480 |
aaactgaacatacacacctcttttacatagtttaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaaaactgtacagc |
6839579 |
T |
|
| Q |
221 |
agttactaaaataaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6839580 |
agttactaaaataaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
6839639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 6831063 - 6831312
Alignment:
| Q |
31 |
ttgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaa |
130 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6831063 |
ttgttgttaattgaacatgaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctgataatacaaactgaa |
6831162 |
T |
|
| Q |
131 |
catacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatacaacagttactaaa |
230 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||| |
|
|
| T |
6831163 |
catacacacctcttttacatagtttaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaactgtacagcagttactaaa |
6831262 |
T |
|
| Q |
231 |
ataaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6831263 |
ataaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
6831312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 8978156 - 8978328
Alignment:
| Q |
17 |
gctctagataccaattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||| | ||| |||||| | | |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
8978156 |
gctctagataccaattgttgttaattgaacaggaaaatagttgctggaaaagaacaaaatagaggagaaataactgctttcaatcatgtaattggtctga |
8978255 |
T |
|
| Q |
117 |
taattcaaactgaacatacac-acatcttttacatagtttaacaatactaaaacttccaataactaccacaat |
188 |
Q |
| |
|
| ||| |||||||||||| || || | ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8978256 |
ttattaaaactgaacataaacaactttttttacatagtttcacaatactaaaacttccaataactaccacaat |
8978328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 11634475 - 11634323
Alignment:
| Q |
34 |
ttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaacat |
133 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||||||||| |||||||||||||| || |||||| ||||| |
|
|
| T |
11634475 |
ttgttaattgaacaagaaaatagttgcaggatatgaacaagacagaggagaaataactgctttcattcaaataattggtctgatgatacaaactaaacat |
11634376 |
T |
|
| Q |
134 |
acac-acatcttttacatagtttaacaatactaaaacttccaataactaccac |
185 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11634375 |
acacaaccacttttacatagtttaacaatactaaaacttccaataactaccac |
11634323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 14478132 - 14478263
Alignment:
| Q |
32 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgat---aattcaaactg |
128 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| || ||||||| |
|
|
| T |
14478132 |
tgttgttaactaaacaagaaaacagttgcaggaaatgaacaagacaaaggagaaataactgctttcattcatgtaatttgtctgatgaaaaaacaaactg |
14478231 |
T |
|
| Q |
129 |
aacatacacacatcttttacatagtttaacaat |
161 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |
|
|
| T |
14478232 |
aacataca-acctcttttacatagtttaacaat |
14478263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 29404914 - 29404769
Alignment:
| Q |
35 |
tgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaacata |
134 |
Q |
| |
|
|||||| |||||||||||| |||||| | ||||||||| || | |||||||||||||||||| |||||| ||| |||||||| | ||||||||| | |
|
|
| T |
29404914 |
tgttaactgaacaagaaaatagttgctggaaatgaacacgacagaggagaaataactgctttgattcatgtaaccggtctgat-acaaaaactgaactga |
29404816 |
T |
|
| Q |
135 |
ca-cacatcttttacatagtttaacaatactaaaacttccaataact |
180 |
Q |
| |
|
|| |||| ||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
29404815 |
cataacatattttacatagtttcatagtactaaaacttccaataact |
29404769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 42532502 - 42532750
Alignment:
| Q |
32 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaac |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42532502 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattcaaactgaac |
42532601 |
T |
|
| Q |
132 |
atacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatacaacagttactaaaa |
231 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||| |
|
|
| T |
42532602 |
atacacacctcttttacatagtttaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaactgtacagcagttactaaaa |
42532701 |
T |
|
| Q |
232 |
taaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42532702 |
taaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
42532750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 44421067 - 44421240
Alignment:
| Q |
32 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgat--aattcaaactga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||||| || |
|
|
| T |
44421067 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacaaaggagaaataactgttttcattcatataattggtctgataaaatacaaacaga |
44421166 |
T |
|
| Q |
130 |
acatacacacatcttttacatagtttaacaatac-taaaacttccaataactaccacaatacagcacaattaatt |
203 |
Q |
| |
|
||| ||| || | ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44421167 |
acacaca-acctgttttacatagtttgacaatacataaaacttccaataactaccacaatacaacacaattaatt |
44421240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 5530179 - 5530350
Alignment:
| Q |
32 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataa-ttcaaactgaa |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| || ||||||||| | || |||||||| |
|
|
| T |
5530179 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgctttcatttatgaaattggtctaacaacaaaaaactgaa |
5530278 |
T |
|
| Q |
131 |
catacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaatt |
203 |
Q |
| |
|
|| ||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5530279 |
cacaca-atctgttttacatagtttgacaatactaaaacttccaataactaccacaatacaacacaattaatt |
5530350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 2765067 - 2764903
Alignment:
| Q |
19 |
tctagataccaattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgata |
118 |
Q |
| |
|
|||| ||||||||||||||||||| || | |||| |||||||| |||||||||||| |||||||||| ||||||||||||| |||||| ||| ||| |
|
|
| T |
2765067 |
tctaaataccaattgttgttaatttaataggaaat-agttgcaggaaatgaacaaga----ggagaaataaatgctttcattcatgtaattgatct-ata |
2764974 |
T |
|
| Q |
119 |
attcaaactgaacatacaca-catcttttacatagtttaacaatactaaaacttccaataactaccacaat |
188 |
Q |
| |
|
| ||||| ||||||||| | ||||||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
2764973 |
aaggaaactaaacatacactgcctcttttacatatattcacaatactaaaacttccaataactatcacaat |
2764903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 38942289 - 38942226
Alignment:
| Q |
377 |
ataataaacataattttttggaatatttactgcagacaagttatcacaaaatagtttcattgat |
440 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38942289 |
ataataaacataattttttggaatactaactgcagacaagttatcacaaaatactttcattgat |
38942226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 2802218 - 2802052
Alignment:
| Q |
19 |
tctagataccaattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgata |
118 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||| || ||||| |||||||||||| |||||||||| ||||||||||||| |||||| ||| ||| |
|
|
| T |
2802218 |
tctaaataccaattgttgttaatttaa---gaaaataggtgcaggaaatgaacaaga----ggagaaataaatgctttcattcatgtaattgatct-ata |
2802127 |
T |
|
| Q |
119 |
attcaaactgaacataca-cacatcttt----tacatagtttaacaatactaaaacttccaataactaccacaat |
188 |
Q |
| |
|
| |||||||||||||| | | ||||| || ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2802126 |
aaggaaactgaacatacaccgcctcttttccatatatagtttcacaatactaaaacttccgataactaccacaat |
2802052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 280
Target Start/End: Complemental strand, 32525199 - 32524940
Alignment:
| Q |
23 |
gataccaattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32525199 |
gataccaattgttgttaattgaacaagaaaacagttgcagataatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattc |
32525100 |
T |
|
| Q |
123 |
aaactgaacatacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaatt--nnnnnnnnctatacaac |
220 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| | |
|
|
| T |
32525099 |
aaactgaacatacacacctcttttacatagtttaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaaaactgtacagc |
32525000 |
T |
|
| Q |
221 |
agttactaaaataaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32524999 |
agttactaaaataaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
32524940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 32529393 - 32529141
Alignment:
| Q |
29 |
aattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32529393 |
aattgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattcaaactg |
32529294 |
T |
|
| Q |
129 |
aacat-acacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatacaacagttact |
227 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| |
|
|
| T |
32529293 |
aacataacacacctcttttacatagtttaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaactgtacagcagttact |
32529194 |
T |
|
| Q |
228 |
aaaataaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32529193 |
aaaataaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
32529141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 32 - 280
Target Start/End: Complemental strand, 44981031 - 44980783
Alignment:
| Q |
32 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaac |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44981031 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgctttcattcatataattggtctgataatacaaactgaac |
44980932 |
T |
|
| Q |
132 |
atacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatacaacagttactaaaa |
231 |
Q |
| |
|
| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||| |
|
|
| T |
44980931 |
acacacacctcttttacatagtttagcaatactaaaacttccaataactaccacaatacaacacaattaattaaataaaactgtacagcagttactaaaa |
44980832 |
T |
|
| Q |
232 |
taaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44980831 |
taaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
44980783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 34 - 280
Target Start/End: Complemental strand, 26345593 - 26345346
Alignment:
| Q |
34 |
ttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaacat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26345593 |
ttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaagaagaaataactgctttcattcatataattggtctgataatacaaactaaacat |
26345494 |
T |
|
| Q |
134 |
acacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaatt-aattnnnnnnnnctatacaacagttactaaaat |
232 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| | |||| ||||||||||||| |
|
|
| T |
26345493 |
acacacctcttttacatagtttaacaatactaaaactttcaataactaccacaatacaacacaattaaattaataaaaattgtacagcagttactaaaat |
26345394 |
T |
|
| Q |
233 |
aaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26345393 |
aaaaacagacatcacacacatcagcagtcctaagcatgatatttaaca |
26345346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 39 - 280
Target Start/End: Complemental strand, 28395169 - 28394928
Alignment:
| Q |
39 |
aattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaacatacaca |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28395169 |
aattgaacaagaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctgataatacaaactgaacatacaca |
28395070 |
T |
|
| Q |
139 |
catcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatacaacagttactaaaataaaaac |
238 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
28395069 |
cctcttttacatagattaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaactgtacagcagttactaaaataaaaac |
28394970 |
T |
|
| Q |
239 |
agacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28394969 |
aaacaacacacacatcagcagtcctaagcatgatatttaaca |
28394928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 35933113 - 35933373
Alignment:
| Q |
32 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaac |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35933113 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataatacaaactgaac |
35933212 |
T |
|
| Q |
132 |
atacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatac------------aa |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| || |
|
|
| T |
35933213 |
atacacacctcttttacatagtttaacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaactgtacagcagttactaaaa |
35933312 |
T |
|
| Q |
220 |
cagttactaaaataaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35933313 |
cagttactaaaataaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
35933373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 47661932 - 47662090
Alignment:
| Q |
31 |
ttgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaa |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
47661932 |
ttgttgttacttgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgatttcattcatgaaattggtctgataatacaaactgaa |
47662031 |
T |
|
| Q |
131 |
catacac-acatcttttacatagtttaacaatactaaaacttccaataactaccacaat |
188 |
Q |
| |
|
|| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47662032 |
cacacacaacctcttttacatagtttaacaatactaaaacttccaataactaccacaat |
47662090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 32 - 280
Target Start/End: Complemental strand, 16413 - 16164
Alignment:
| Q |
32 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaac |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16413 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgctttcattcatataattggtctgataatacaaactgaac |
16314 |
T |
|
| Q |
132 |
atacacacatctt-ttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatacaacagttactaaa |
230 |
Q |
| |
|
| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||| |
|
|
| T |
16313 |
acacacacctcttcttacatagtttagcaatactaaaacttccaataactaccacaatacaacacaattaattaaataaaactgtacagcagttactaaa |
16214 |
T |
|
| Q |
231 |
ataaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16213 |
ataaaaacagacaacacacacatcagcagtcctaagcatgatatttaaca |
16164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 43166032 - 43166283
Alignment:
| Q |
31 |
ttgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctg--ataattcaaactg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
43166032 |
ttgttgttaattgaacaagaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctgaaaaaaacaaaactg |
43166131 |
T |
|
| Q |
129 |
aacatacacacatcttttacatagtttaacaatactaaaacttccaataactaccacaatacagcacaattaattnnnnnnnnctatacaacagttacta |
228 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||| |
|
|
| T |
43166132 |
aacatacacacctcttttacatagtttgacaatactaaaacttccaataactaccacaatacaacacaattaattaataaaaactgtacagcagttacta |
43166231 |
T |
|
| Q |
229 |
aaataaaaacagacaacacacacatcagcaatcctaagcatgatatttaaca |
280 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43166232 |
aaataaaaacagataacacacacatcagcagtcctaagcatgatatttaaca |
43166283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 14303 - 14375
Alignment:
| Q |
311 |
ctttctttaatactctagacagaacctcaatttttaaggactattcgtcttaacgttagttttattataataa |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14303 |
ctttctttaatactctagacagaacctcaacttttaaggactattcgtcttaatgttagttttattataataa |
14375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 317
Target Start/End: Original strand, 10564 - 10599
Alignment:
| Q |
282 |
ctattgtttatctcaaaataataggtatcctttctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10564 |
ctattgtttatctcaaaataataggtatcctttctt |
10599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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