View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12325_high_5 (Length: 244)

Name: NF12325_high_5
Description: NF12325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12325_high_5
NF12325_high_5
[»] chr8 (4 HSPs)
chr8 (7-244)||(14539252-14539489)
chr8 (142-240)||(1336280-1336379)
chr8 (141-236)||(16340482-16340577)
chr8 (141-234)||(37728280-37728373)
[»] chr4 (6 HSPs)
chr4 (95-242)||(13028977-13029123)
chr4 (141-244)||(13035646-13035749)
chr4 (146-240)||(47551897-47551991)
chr4 (82-239)||(22087560-22087717)
chr4 (99-240)||(26333020-26333161)
chr4 (142-244)||(46732770-46732874)
[»] chr2 (3 HSPs)
chr2 (143-240)||(42071527-42071624)
chr2 (148-241)||(28528939-28529032)
chr2 (94-240)||(42530773-42530921)
[»] chr3 (8 HSPs)
chr3 (142-240)||(44441778-44441876)
chr3 (145-241)||(35864077-35864173)
chr3 (143-241)||(1902008-1902106)
chr3 (143-241)||(1911454-1911552)
chr3 (181-239)||(7729702-7729760)
chr3 (86-132)||(31339746-31339792)
chr3 (95-241)||(21984109-21984254)
chr3 (96-132)||(7729591-7729627)
[»] chr1 (6 HSPs)
chr1 (142-240)||(46396443-46396541)
chr1 (73-241)||(37245043-37245213)
chr1 (176-241)||(21487334-21487398)
chr1 (184-240)||(1282356-1282412)
chr1 (184-240)||(1283387-1283443)
chr1 (162-220)||(19967225-19967283)
[»] chr7 (3 HSPs)
chr7 (141-241)||(23756470-23756570)
chr7 (162-211)||(46232386-46232435)
chr7 (177-242)||(7440067-7440134)
[»] chr6 (4 HSPs)
chr6 (147-241)||(6822706-6822800)
chr6 (141-241)||(33106705-33106805)
chr6 (70-132)||(18250689-18250751)
chr6 (141-241)||(11769758-11769858)
[»] chr5 (3 HSPs)
chr5 (141-241)||(15727048-15727148)
chr5 (141-241)||(15810893-15810993)
chr5 (95-241)||(29368668-29368813)
[»] scaffold0245 (1 HSPs)
scaffold0245 (184-240)||(8036-8092)
[»] scaffold0229 (1 HSPs)
scaffold0229 (184-240)||(8364-8420)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 14539252 - 14539489
Alignment:
Q  7 agaacctgtgaaaagctgttatcttttattagcattttcattaaattaaattttttcacttggaatcagggacatatgcatgttgctttatgtgtgggcc 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  14539252 agaacctgtgaaaagctattatcttttattagcattttcattaaattaaattttttcacttggaatcagggacaaatgcatgttgctttatgtgtgggct 14539351  T
Q  107 tgtgcctacacaaaatttttagaaacnnnnnnnnagtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttct 206  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14539352 tgtgcctacacaaaatttttagaaacttttttttagtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttct 14539451  T
Q  207 ctcttggcccacacctataatcatatatctcaaatcct 244  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14539452 ctcttggcccacacctataatcatatatctcaaatcct 14539489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 1336379 - 1336280
Alignment:
Q  142 gtagtataat-gtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||||| ||| | ||| |||||||||| || |||||  ||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  1336379 gtagtataattgtatcaatagttgacattttgatcacatgaaccacacttatcacaaaacatttctctcttggcccacacttatcatcatatatctcaaa 1336280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 16340577 - 16340482
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatct 236  Q
    |||||||||||||| | ||| |||||||||||   |||||||| ||||||| ||||||| |||||| ||||| ||||||| |||  ||||||||||    
T  16340577 agtagtataatgtatcaatagttgacattttagccacatggtctacacttatcacaaataatttctatcttgacccacacttatcgtcatatatct 16340482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 37728280 - 37728373
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatat 234  Q
    |||| |||||| || | ||| |||||||||  |||| ||||| |||||||| |||||||||||||||||||   |||||||||| |||||||||    
T  37728280 agtaatataatatatcaatagttgacatttggattagatggttcacacttaccacaaatcatttctctctttttccacacctatcatcatatat 37728373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 13029123 - 13028977
Alignment:
Q  95 tatgtgtgggcctgtgcctacacaaaatttttagaaacnnnnnnnnagtagtataatgtacccataattgacattttaattacatggtccacacttaaca 194  Q
    ||||||||||| ||||||||||||||| ||||||||||        |||||||||||||||  ||| |||||||||| |  ||||| |||||||||| ||    
T  13029123 tatgtgtgggcttgtgcctacacaaaaattttagaaacttatttt-agtagtataatgtacgaatagttgacattttgaccacatgatccacacttatca 13029025  T
Q  195 caaatcatttctctcttggcccacacctataatcatatatctcaaatc 242  Q
    |||||||||| |||||||| ||||| |||||||||||||||| |||||    
T  13029024 caaatcatttatctcttggtccacatctataatcatatatctgaaatc 13028977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 13035749 - 13035646
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    ||||||||||||||   ||| |||||||||| |  ||| |  ||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||    
T  13035749 agtagtataatgtaggaatagttgacattttgaccacaagacccacacttatcacaaatcatttatctcttggcccacacctataatcatatatatgaaa 13035650  T
Q  241 tcct 244  Q
    ||||    
T  13035649 tcct 13035646  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 47551897 - 47551991
Alignment:
Q  146 tataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    ||||||||||  ||| ||||||||||||| |||||  ||||||||| |||||||||||||| ||||||||| ||| ||| |||| ||||||||||    
T  47551897 tataatgtactaatagttgacattttaatcacatgaaccacacttatcacaaatcatttctttcttggcccgcacttatcatcaaatatctcaaa 47551991  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 22087560 - 22087717
Alignment:
Q  82 atgcatgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaacnnnnnnnnagtagtataatgtacccataattgacattttaattacatgg 181  Q
    |||||||||| | |||||||| |  ||||| | ||||||||||||| ||||        ||||||  ||| |||| ||| |||||||||| |  |||||     
T  22087560 atgcatgttgttctatgtgtgcgtttgtgcttgcacaaaatttttaaaaacctttttttagtagtgcaatataccaatagttgacattttgaccacatga 22087659  T
Q  182 tccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaa 239  Q
     ||||||||| |||| ||||||||||| ||||| |||||||||||| |||||||||||    
T  22087660 cccacacttatcacatatcatttctcttttggctcacacctataattatatatctcaa 22087717  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 26333020 - 26333161
Alignment:
Q  99 tgtgggcctgtgcctacacaaaatttttagaaacnnnnnnnnagtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaa 198  Q
    ||||||| |||| | |||||||||||||||||||         ||||||||||||| | ||| ||||| |||| |  | | ||  |||||||| ||||||    
T  26333020 tgtgggcttgtggccacacaaaatttttagaaacaatttttttgtagtataatgtatcaatagttgacgttttgaccataaggatcacacttaccacaaa 26333119  T
Q  199 tcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    | |||||||||||||||||||| ||| |||||||||||||||    
T  26333120 ttatttctctcttggcccacacttattatcatatatctcaaa 26333161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 46732874 - 46732770
Alignment:
Q  142 gtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatc--atatatctcaa 239  Q
    ||||||||||||||| ||| |||||| ||  || ||||| |||||||||| || | ||||||| |||||| || ||||||||| |||  |||||||||||    
T  46732874 gtagtataatgtaccaatagttgacaattagatcacatgctccacacttaccaaatatcatttttctcttcgctcacacctatcatcatatatatctcaa 46732775  T
Q  240 atcct 244  Q
    |||||    
T  46732774 atcct 46732770  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 42071624 - 42071527
Alignment:
Q  143 tagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||||||||  ||| ||| |||||| || ||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  42071624 tagtataatgtactaatagttggcattttgatcacatgatccacacttatcacaaatcatttctctcttggtccacacctatcatcatatatctcaaa 42071527  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 28528939 - 28529032
Alignment:
Q  148 taatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
    ||||||||| |||||||||||||| || |||||||||||||||| || |||| |||||||| |||| |||||| ||| ||||||||||||||||    
T  28528939 taatgtaccaataattgacattttgatcacatggtccacacttatcagaaataatttctcttttggtccacacatatcatcatatatctcaaat 28529032  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 42530773 - 42530921
Alignment:
Q  94 ttatgtgtgggcctgtgcctacacaaaatttttagaaacnnnnnnnnagtagtata--atgtacccataattgacattttaattacatggtccacactta 191  Q
    |||| ||||||| |||||| |||||||||||||||||||        |||||||||  ||||| | ||| |||||||||| |  | || || ||||||||    
T  42530773 ttatatgtgggcttgtgcccacacaaaatttttagaaaccattttttagtagtatataatgtatcaatagttgacattttgaccatatagttcacactta 42530872  T
Q  192 acacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||| || | ||||||||||||||| ||| |||||||||||||||    
T  42530873 acacaaattatatttctcttggcccacacttatcatcatatatctcaaa 42530921  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 44441876 - 44441778
Alignment:
Q  142 gtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    ||||||||||||| | ||| |||||||||| || ||||||  |||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  44441876 gtagtataatgtatcaatagttgacattttgatcacatggatcacacttatcacaaatcatttctctcttggcgcacacttatcatcatatatctcaaa 44441778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 35864077 - 35864173
Alignment:
Q  145 gtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
    |||||||||||  ||| |||| ||||| |  |||| | || |||||| |||||||||||||||| |||||| |||| ||| ||||||||||||||||    
T  35864077 gtataatgtactaatagttgatatttttaccacattgccctcacttatcacaaatcatttctcttttggcctacacatatcatcatatatctcaaat 35864173  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 1902008 - 1902106
Alignment:
Q  143 tagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
    |||||||||| ||  ||| |||| ||||| || |||||| || |||||| || ||||||||||||| |||| | |||| ||| ||||||||||||||||    
T  1902008 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttggtctacacatatcatcatatatctcaaat 1902106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 1911454 - 1911552
Alignment:
Q  143 tagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
    |||||||||| ||  ||| |||| ||||| || |||||| || |||||| || ||||||||||||| |||| | |||| ||| ||||||||||||||||    
T  1911454 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttggtctacacatatcatcatatatctcaaat 1911552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 7729702 - 7729760
Alignment:
Q  181 gtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaa 239  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||| |||||||| |||||    
T  7729702 gtccaaacttatcacaaattatttctctcttgggccacacctatcatcatatagctcaa 7729760  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 31339746 - 31339792
Alignment:
Q  86 atgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaac 132  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||    
T  31339746 atgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaac 31339792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 21984109 - 21984254
Alignment:
Q  95 tatgtgtgggcctgtgcctacacaaaatttttagaaacnnnnnnnnagtagtataatgtacccataattgacattttaattacatggtccacacttaaca 194  Q
    ||||||||||| ||||| ||||||||||||| | ||||        ||||||||||| || | |||||||| |||||||   | ||  ||||| |||  |    
T  21984109 tatgtgtgggcttgtgc-tacacaaaattttcaaaaacttttttttagtagtataatatatcaataattgatattttaacatcttgacccacatttatta 21984207  T
Q  195 caaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
     ||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  21984208 aaaatcatttctctcttggctcacatatatcatcatatatctcaaat 21984254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 7729591 - 7729627
Alignment:
Q  96 atgtgtgggcctgtgcctacacaaaatttttagaaac 132  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  7729591 atgtgtgggcttgtgcctacacaaaaattttagaaac 7729627  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 46396443 - 46396541
Alignment:
Q  142 gtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    ||||||||||||| | ||| |||||||||| || ||||||  |||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||    
T  46396443 gtagtataatgtatcaatagttgacattttgatcacatggatcacacttatcagaaatcatttctctcttggcccacacttatcatcatatatctcaaa 46396541  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 37245213 - 37245043
Alignment:
Q  73 cagggacatatgcatgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaacnnnnnnnn-agtagtataatgtacccataattgacatttt 171  Q
    |||||||  ||||||||| || ||||||| ||| |||||||||||| || ||||||||||         ||||||||||| || | ||| ||||||||||    
T  37245213 cagggacggatgcatgttactctatgtgtaggcttgtgcctacacacaaattttagaaacttattttttagtagtataatatatcaatatttgacatttt 37245114  T
Q  172 aattacatggtccacacttaacacaaatcatttctctctt-ggcccacacctataatcatatatctcaaat 241  Q
     || ||||| |||||||||| || |||||||||||||||| | ||||||  ||||||||||||||||||||    
T  37245113 gatcacatgatccacacttatcataaatcatttctctcttagccccacatatataatcatatatctcaaat 37245043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 21487334 - 21487398
Alignment:
Q  176 acatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
    |||||||||||||||  |||||||||||||||| |||| |||||| ||| |||| |||||||||||    
T  21487334 acatggtccacacttctcacaaatcatttctcttttggtccacacatatcatca-atatctcaaat 21487398  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 1282412 - 1282356
Alignment:
Q  184 cacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||| |||||||||||||| ||||||||||||| | |  ||||||||||||||    
T  1282412 cacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 1282356  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 1283443 - 1283387
Alignment:
Q  184 cacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||| |||||||||||||| ||||||||||||| | |  ||||||||||||||    
T  1283443 cacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 1283387  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 19967225 - 19967283
Alignment:
Q  162 ttgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacac 220  Q
    ||||||||||||  ||||||  |||||||| |||||||||||| |||||||| ||||||    
T  19967225 ttgacattttaaccacatggctcacacttatcacaaatcatttatctcttggtccacac 19967283  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 23756470 - 23756570
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||||||||||| |   |||||||||| || | |||| |||||||||| ||||||||||||||| ||||| | ||||||| |||||||||||||||    
T  23756470 agtagtataatgtaccaaccgttgacattttgatgagatggcccacacttaatacaaatcatttctcttttggcacgcacctatcatcatatatctcaaa 23756569  T
Q  241 t 241  Q
    |    
T  23756570 t 23756570  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 46232386 - 46232435
Alignment:
Q  162 ttgacattttaattacatggtccacacttaacacaaatcatttctctctt 211  Q
    |||||||||| | ||||||  ||||||||| |||||||||||||||||||    
T  46232386 ttgacattttgactacatgacccacacttatcacaaatcatttctctctt 46232435  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 7440067 - 7440134
Alignment:
Q  177 catggtccacacttaacacaaatcatttctctcttggcccacacctataatcata--tatctcaaatc 242  Q
    ||||| ||||||||| ||||| |  ||||||||||| ||||||||||| ||||||  |||||||||||    
T  7440067 catggcccacacttatcacaagttctttctctcttgacccacacctatcatcatatgtatctcaaatc 7440134  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 6822800 - 6822706
Alignment:
Q  147 ataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
    |||||||| | |||||||||||||| || ||||  |||||| ||| |||||||||||| ||||||| |||||| |||| ||||||||||||||||    
T  6822800 ataatgtatcaataattgacattttgatcacataatccacatttatcacaaatcatttttctcttgacccacatctatcatcatatatctcaaat 6822706  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 33106705 - 33106805
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||||||||| | ||| |||||||||| |  | ||| | |||||||| ||||||| ||||||||||||||| |||| |||| |||||||| |||||    
T  33106705 agtagtataatgtatcaatagttgacattttgaccatatgattcacacttatcacaaattatttctctcttggcctacacatatagtcatatatatcaaa 33106804  T
Q  241 t 241  Q
    |    
T  33106805 t 33106805  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 18250689 - 18250751
Alignment:
Q  70 aatcagggacatatgcatgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaac 132  Q
    ||||||||||  ||||||||||   ||||||||||| |||| |||||||||||||||||||||    
T  18250689 aatcagggacggatgcatgttgggatatgtgtgggcttgtgactacacaaaatttttagaaac 18250751  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 11769758 - 11769858
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    ||||||||||||||   ||| || ||||||| || | |||| ||||||||  |||||||||||||||| ||||| || |  ||| |||||||||||||||    
T  11769758 agtagtataatgtattaatagttaacattttgatcatatggcccacacttctcacaaatcatttctcttttggctcaaatatatcatcatatatctcaaa 11769857  T
Q  241 t 241  Q
    |    
T  11769858 t 11769858  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 15727148 - 15727048
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||||||||| | ||| |||||||||| || | | | |||||| ||| ||||||| |||| | | ||||||||||  |||||||||||||||||||    
T  15727148 agtagtataatgtatcaatagttgacattttgatcatacgatccacatttatcacaaattatttgtattttggcccacatatataatcatatatctcaaa 15727049  T
Q  241 t 241  Q
    |    
T  15727048 t 15727048  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 15810993 - 15810893
Alignment:
Q  141 agtagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||||||||| | ||| || ||||||| |  ||| |||| ||||||| ||||||| |||| ||| ||||||||||  ||| |||||||||||||||    
T  15810993 agtagtataatgtatcaatagttcacattttgaccacacggtctacacttatcacaaattatttttcttttggcccacatatatcatcatatatctcaaa 15810894  T
Q  241 t 241  Q
    |    
T  15810893 t 15810893  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 29368813 - 29368668
Alignment:
Q  95 tatgtgtgggcctgtgcctacacaaaatttttagaaacnnnnnnnnagtagtataatgtacccataattgacattttaattacatggtccacacttaaca 194  Q
    ||||||||||| ||||| ||||||||||||| | ||||        ||||||||||| || | |||||||| |||||||   | ||  ||||| |||  |    
T  29368813 tatgtgtgggcttgtgc-tacacaaaattttcaaaaacttttttttagtagtataatatatcaataattgatattttaacatcttgacccacatttatta 29368715  T
Q  195 caaatcatttctctcttggcccacacctataatcatatatctcaaat 241  Q
     ||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  29368714 aaaatcatttctctcttggctcacatatatcatcatatatctcaaat 29368668  T

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Target: scaffold0245 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 8092 - 8036
Alignment:
Q  184 cacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||| |||||||||||||| ||||||||||||| | |  ||||||||||||||    
T  8092 cacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 8036  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 8420 - 8364
Alignment:
Q  184 cacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 240  Q
    |||||||| |||||||||||||| ||||||||||||| | |  ||||||||||||||    
T  8420 cacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 8364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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