View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12325_low_2 (Length: 485)
Name: NF12325_low_2
Description: NF12325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12325_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 64 - 467
Target Start/End: Original strand, 38556693 - 38557096
Alignment:
| Q |
64 |
ttggcggcctcctgtctgaagcatcattcctgggaaagtttgattcaaaattgtttggcagcaatgctaccagtcaaacacgtcatttaatttcagattc |
163 |
Q |
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| T |
38556693 |
ttggcggcctcctgtctgaagcatcattcctgggaaagtttgattcaaaattgtttggcagcaatggtaccagtcaaacacgtcatttaatttcagattc |
38556792 |
T |
|
| Q |
164 |
attggatgcttttatcacctcccgaaatagtcatcctcctgtttcaacaccatctgccggaccgttactcacatcattttttgatgctggcgatgcatgc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38556793 |
attggatgcttttatcacctcccgaaatagtcatcctcctgtttcaacaccatctgccggaccgttgctcacatcattttttgatgctggcgatgcatgc |
38556892 |
T |
|
| Q |
264 |
aattcatttgatcttcaaaatttatcttccccaacagatgtgcagactgatagtggaacaaaagcaggttattccgtggcctgctgtcaggatgcatctt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38556893 |
aattcatttgatcttcaaaatttatcttccccaacagatgtgcagactgatagtggaacaaaaacaggttattccgtggcctgctgtcaggatgcatctt |
38556992 |
T |
|
| Q |
364 |
catacttgtttaagcttccatgtacagacaaggtcagttgctaacagtcttaatcaaaatctattaattattgaaatgttagatagtttcacacgcgatg |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556993 |
catacttgtttaagcttccatgtacagacaaggtcagttgcttacagtcttaatccaaatctattaattattgaaatgttagatagtttcacacgcgatg |
38557092 |
T |
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| Q |
464 |
caaa |
467 |
Q |
| |
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|||| |
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| T |
38557093 |
caaa |
38557096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38556692 - 38556625
Alignment:
| Q |
1 |
tgctgatgttgtctcgacaatcagcccatggcatcaatggttgttgaacgctgcaactttcttttggc |
68 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38556692 |
tgcttatgttgtctagacaatcagcccatggcatcaatggctgttgaacgctgcaactttcttttggc |
38556625 |
T |
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