View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12326_high_12 (Length: 291)
Name: NF12326_high_12
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_high_12 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 35219481 - 35219222
Alignment:
| Q |
17 |
gccctgaatatcatatatagatgtaaataaattaccaactattataatgtaatgaaaatgtgtaaaaataattcttaagcaacaaatactagctaatagt |
116 |
Q |
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| T |
35219481 |
gccctgaatatcatatatagatgtaaataaattaccaactattataatgtaatgaaaatgtgtaaaaataattcttaagcaacaaatactagctaatagt |
35219382 |
T |
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| Q |
117 |
actagaagagaaatcaaaggggtacttacttactggatcgaaggcatccactattattgcatcatatgtgccttttgggacagaattcagaaaaattgtt |
216 |
Q |
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| T |
35219381 |
actagaagagaaatgaaaggggtacttacttactggatcgaaggcatccactattattgcatcatatgtgccttttgggacagaattcagaaaaattgtt |
35219282 |
T |
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| Q |
217 |
cctgcgccagtttcaaataattaaccatcacaataataaaaatgacataatgaataatat |
276 |
Q |
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| T |
35219281 |
cctgcgccagtttcaaataattaaccatcacaataataaaaatgacataatgaataatat |
35219222 |
T |
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Target: scaffold0044 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 10339 - 10445
Alignment:
| Q |
143 |
tacttactggatcgaaggcatccactattattgcatcatatgtgccttttgggacagaattcagaaaaattgttcctgcgccagtttcaaataattaacc |
242 |
Q |
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| T |
10339 |
tacttactaggtcgaaggcattcactattattgcatcatatgagccttttgggacataagttagaaaagttgttcctgtgccagtttcaattgattaagc |
10438 |
T |
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| Q |
243 |
atcacaa |
249 |
Q |
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| T |
10439 |
atcacaa |
10445 |
T |
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