View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12326_high_15 (Length: 234)
Name: NF12326_high_15
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_high_15 |
 | |
|
| [»] scaffold0347 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 25065557 - 25065347
Alignment:
| Q |
12 |
ctgtggccggaaaacccaacgaacccggaaacgaaaatgattgagaacggcagcgttgttgccatcgccggtgatggccgtcgccaaccttcttcatgta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25065557 |
ctgtggccggaaaacccaacgaacccggaaacgaaaacgattgagaacggaagcattgttgccgtcgccggtgatggccgtcgccaaccttcttcatgta |
25065458 |
T |
|
| Q |
112 |
cgccagaaaacgaaccggtgagtttattgaagctcaaatcgattctgtgaagttttgtgagagaattcaaagagtttgggagagatcatgatagtgaatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25065457 |
cgccagaaaacgaaccggtgagtttattgaagctcaaatcgattctgtgaagttttgtgagagaattcaaagagtttgggagagaccatgatagtgaatt |
25065358 |
T |
|
| Q |
212 |
gtgtgaaagat |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
25065357 |
gtgtgaaagat |
25065347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 48806147 - 48806247
Alignment:
| Q |
122 |
cgaaccggtgagtttattgaagctcaaatcgattctgtgaagttttgtgagagaattcaaagagtttgggagagatcatgatagtgaattgtgtgaaaga |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| | | ||| ||||||||||||||| |
|
|
| T |
48806147 |
cgaaccggcgagtttattgaagctcaaatcgattctgtgaagatttatgagagaattcaatgagtttgggagagacccagttagggaattgtgtgaaaga |
48806246 |
T |
|
| Q |
222 |
t |
222 |
Q |
| |
|
| |
|
|
| T |
48806247 |
t |
48806247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 35712721 - 35712512
Alignment:
| Q |
13 |
tgtggccggaaaacccaacgaacccggaaacgaaaatgattgagaacggcagcgttgttgccatcgccggtgatggccgtcgccaaccttcttcatgtac |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35712721 |
tgtggccagaaaacccaacgaacccggaaacaaaaacgattgagaacggcagtgttgttgtcgtcgccggtgatggccgtcgccaactttcttcatgtac |
35712622 |
T |
|
| Q |
113 |
gccagaaaacgaaccggtgagtttattgaagctcaaatcgattctgtgaagttttgtgagagaattcaaagagtttgggagagatcatgatagtgaattg |
212 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
35712621 |
gctagaaaacgaaccgatgagtttattgaagctcaaatcgattatgtgaaggtttgtgagagaattcaaagagtttaggagagaccatgatagtgaattg |
35712522 |
T |
|
| Q |
213 |
tgtgaaagat |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
35712521 |
tgtgaaagat |
35712512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0347 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0347
Description:
Target: scaffold0347; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 14211 - 14049
Alignment:
| Q |
13 |
tgtggccggaaaacccaacgaacccggaaacgaaaatgattgagaacggcagcgttgttgccatcgccggtgatggccgtcgccaaccttcttcatgtac |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14211 |
tgtggctggaaaacccaacgaacccggaaacaaaaacgattgagaacgacagcgttgtttccgtcgccggtgatggctgtcgccaagcttcttcatgtac |
14112 |
T |
|
| Q |
113 |
gccagaaaacgaaccggtgagtttattgaagctcaaatcgattctgtgaagttttgtgagaga |
175 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14111 |
ggcataaaacgaaccggtgagtttattgaagctcaaatcgattctgtgaagttttgtgagaga |
14049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 13385508 - 13385694
Alignment:
| Q |
20 |
ggaaaacccaacgaacccggaaacgaaaatgattgagaacggcagcgttgttgccatcgccggtgatggccgtcgccaaccttcttcatgtacgccagaa |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
13385508 |
ggaaaacccaacaaacccggaaacgaaaacgattgagaacggtagcgttgttgcc----------------gtcgccaaccttcttcatgtacgctagaa |
13385591 |
T |
|
| Q |
120 |
aacgaaccggtgagtttattgaagctcaaatcgattctgtgaagttttgtgagagaattcaaagagtttgggagagatcatgatagtgaattgtgtgaaa |
219 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13385592 |
aacgaaccgatgagttttttgaagctcaaatcgattctgtgaaggtttgacaaagaactcaaagagtttgggagagaccatgatagtgaattgtgtgaaa |
13385691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 140472 - 140554
Alignment:
| Q |
15 |
tggccggaaaacccaacgaacccggaaacgaaaatgattgagaacggcagcgttgttgccatcgccggtgatggccgtcgcca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | || ||||||||| | |||||| || ||| |||| || |||||||||| |
|
|
| T |
140472 |
tggccggaaaacccaacgaacccggaaatgaagacgactgagaacggaaacgttgtggcagtcgtcggtcatcgccgtcgcca |
140554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 148493 - 148575
Alignment:
| Q |
15 |
tggccggaaaacccaacgaacccggaaacgaaaatgattgagaacggcagcgttgttgccatcgccggtgatggccgtcgcca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | || ||||||||| | |||||| || ||| |||| || |||||||||| |
|
|
| T |
148493 |
tggccggaaaacccaacgaacccggaaatgaagacgactgagaacggaaacgttgtggcagtcgtcggtcatcgccgtcgcca |
148575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 140583 - 140612
Alignment:
| Q |
96 |
caaccttcttcatgtacgccagaaaacgaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
140583 |
caaccttcttcatgtacgccagaaaacgaa |
140612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 148604 - 148633
Alignment:
| Q |
96 |
caaccttcttcatgtacgccagaaaacgaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
148604 |
caaccttcttcatgtacgccagaaaacgaa |
148633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University