View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12326_high_4 (Length: 440)
Name: NF12326_high_4
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 38 - 424
Target Start/End: Original strand, 3114707 - 3115093
Alignment:
| Q |
38 |
gaagatcattactgttttatatccaagcatgctgttagaagtaggatcatcccacactagtagaagcactctcacaccttcttgtgatttagctttgaga |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3114707 |
gaagatcattactgttttatatccaagcatgctgttagaagtaggatcatcccacacaagtagaagcactctcacaccttcttgtgatttagctttgaga |
3114806 |
T |
|
| Q |
138 |
agatcacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3114807 |
agatcacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcct |
3114906 |
T |
|
| Q |
238 |
gacttattgcatcaaagatatcatgccaacaatttccactgtcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtgg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3114907 |
gacttattgcatcaaagatatcatgccaacaatttccactctcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtgg |
3115006 |
T |
|
| Q |
338 |
aacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaac |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3115007 |
aacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaac |
3115093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 42 - 416
Target Start/End: Original strand, 3120567 - 3120941
Alignment:
| Q |
42 |
atcattactgttttatatccaagcatgctgttagaagtaggatcatcccacactagtagaagcactctcacaccttcttgtgatttagctttgagaagat |
141 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3120567 |
atcattaccgttttatatccaaacatgcttttagaagtaggatcatcccacacaagtagaagcactctcacaccttcttgtgatttagctttgagaagat |
3120666 |
T |
|
| Q |
142 |
cacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcctgact |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
3120667 |
cacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtacacggaccaaccaacaatatagaccaatcgacgagcctgact |
3120766 |
T |
|
| Q |
242 |
tattgcatcaaagatatcatgccaacaatttccactgtcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtggaaca |
341 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3120767 |
tattgcatcaaagatatcttgccaacaatttccactctcataaataacatcatgatcaccaccatcaaccctcaaaccaggaagacaaccttgtggaaca |
3120866 |
T |
|
| Q |
342 |
tgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
3120867 |
tgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataatca |
3120941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University