View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12326_high_5 (Length: 387)

Name: NF12326_high_5
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12326_high_5
NF12326_high_5
[»] chr5 (23 HSPs)
chr5 (11-185)||(19357261-19357435)
chr5 (19-187)||(33858535-33858704)
chr5 (9-186)||(11607532-11607710)
chr5 (9-150)||(39570077-39570219)
chr5 (14-187)||(38010610-38010785)
chr5 (9-174)||(1826254-1826420)
chr5 (30-186)||(33271630-33271787)
chr5 (14-187)||(29989962-29990137)
chr5 (9-161)||(13015376-13015530)
chr5 (4-116)||(9827778-9827890)
chr5 (14-138)||(13086753-13086879)
chr5 (14-187)||(13478041-13478216)
chr5 (38-174)||(10292897-10293033)
chr5 (15-186)||(13421007-13421180)
chr5 (323-386)||(19296227-19296290)
chr5 (69-162)||(42148201-42148295)
chr5 (323-373)||(3629292-3629342)
chr5 (62-116)||(37881189-37881243)
chr5 (325-372)||(6688804-6688851)
chr5 (325-374)||(73583-73632)
chr5 (328-387)||(11983649-11983709)
chr5 (329-383)||(18705020-18705075)
chr5 (323-370)||(27193026-27193073)
[»] chr2 (19 HSPs)
chr2 (9-185)||(34392080-34392257)
chr2 (8-173)||(7381686-7381851)
chr2 (28-174)||(23863813-23863958)
chr2 (9-186)||(37357915-37358097)
chr2 (7-126)||(21603952-21604072)
chr2 (14-174)||(4775634-4775796)
chr2 (42-174)||(4779613-4779746)
chr2 (65-187)||(25275619-25275741)
chr2 (45-187)||(41095783-41095926)
chr2 (19-129)||(14565908-14566019)
chr2 (119-186)||(21606145-21606212)
chr2 (325-383)||(3268815-3268874)
chr2 (325-383)||(3269374-3269433)
chr2 (325-383)||(3269933-3269992)
chr2 (79-117)||(34903967-34904005)
chr2 (301-370)||(19285873-19285942)
chr2 (326-385)||(37284452-37284512)
chr2 (33-133)||(10163501-10163603)
chr2 (325-372)||(38214130-38214177)
[»] chr4 (26 HSPs)
chr4 (9-187)||(12473699-12473878)
chr4 (9-187)||(12528108-12528287)
chr4 (9-161)||(33249397-33249550)
chr4 (11-174)||(22343334-22343498)
chr4 (9-170)||(21260789-21260951)
chr4 (7-172)||(35869583-35869749)
chr4 (9-169)||(51811909-51812070)
chr4 (9-186)||(55590477-55590644)
chr4 (14-186)||(52012778-52012952)
chr4 (15-184)||(52910050-52910219)
chr4 (14-188)||(9799358-9799534)
chr4 (15-111)||(49999662-49999758)
chr4 (9-100)||(34829168-34829259)
chr4 (45-104)||(1796163-1796222)
chr4 (38-107)||(46719954-46720023)
chr4 (111-187)||(1796648-1796724)
chr4 (323-380)||(16572267-16572325)
chr4 (9-130)||(33174513-33174630)
chr4 (325-383)||(31707421-31707480)
chr4 (18-73)||(49998486-49998541)
chr4 (325-370)||(42312494-42312539)
chr4 (125-173)||(35781021-35781069)
chr4 (14-138)||(47943158-47943285)
chr4 (37-73)||(35781027-35781063)
chr4 (332-383)||(44884423-44884474)
chr4 (99-186)||(46720200-46720290)
[»] chr3 (28 HSPs)
chr3 (187-387)||(17003644-17003846)
chr3 (8-187)||(44380248-44380428)
chr3 (18-184)||(33509684-33509851)
chr3 (9-159)||(47426345-47426496)
chr3 (14-187)||(47186175-47186350)
chr3 (9-114)||(50934495-50934600)
chr3 (9-174)||(35094541-35094709)
chr3 (12-186)||(37742726-37742898)
chr3 (14-174)||(31187079-31187241)
chr3 (14-186)||(42664673-42664847)
chr3 (9-174)||(17466268-17466434)
chr3 (16-165)||(39498689-39498838)
chr3 (14-186)||(34029288-34029462)
chr3 (257-387)||(45261312-45261443)
chr3 (9-82)||(32319468-32319541)
chr3 (9-80)||(10179868-10179939)
chr3 (323-383)||(35455323-35455383)
chr3 (9-80)||(10018671-10018742)
chr3 (327-387)||(25295120-25295181)
chr3 (9-80)||(10123211-10123282)
chr3 (129-187)||(19619214-19619272)
chr3 (117-166)||(25859019-25859068)
chr3 (328-379)||(36659206-36659258)
chr3 (323-370)||(8825444-8825490)
chr3 (325-364)||(32211881-32211920)
chr3 (323-364)||(40345022-40345063)
chr3 (323-364)||(43320223-43320264)
chr3 (301-370)||(46918549-46918617)
[»] chr1 (25 HSPs)
chr1 (8-174)||(32676130-32676297)
chr1 (9-174)||(29119334-29119500)
chr1 (14-187)||(2569037-2569210)
chr1 (14-184)||(8809639-8809811)
chr1 (9-174)||(46435475-46435629)
chr1 (9-162)||(8462124-8462277)
chr1 (9-107)||(25161304-25161402)
chr1 (323-387)||(9851881-9851945)
chr1 (14-187)||(35998252-35998427)
chr1 (21-171)||(35534413-35534561)
chr1 (11-95)||(7214501-7214585)
chr1 (323-387)||(28469949-28470013)
chr1 (43-106)||(3688917-3688980)
chr1 (256-381)||(36437274-36437400)
chr1 (323-387)||(17988351-17988416)
chr1 (325-383)||(39150252-39150311)
chr1 (324-372)||(46443718-46443766)
chr1 (56-119)||(8555471-8555534)
chr1 (325-387)||(31152453-31152516)
chr1 (15-112)||(6223052-6223149)
chr1 (323-372)||(28165209-28165258)
chr1 (87-148)||(16679765-16679828)
chr1 (15-63)||(16679821-16679868)
chr1 (111-171)||(31932251-31932311)
chr1 (328-364)||(34702222-34702258)
[»] chr7 (17 HSPs)
chr7 (9-172)||(35341531-35341695)
chr7 (9-186)||(48250149-48250329)
chr7 (34-187)||(32694567-32694721)
chr7 (10-186)||(48072385-48072560)
chr7 (8-112)||(40893114-40893219)
chr7 (323-387)||(20949088-20949152)
chr7 (18-107)||(31306951-31307041)
chr7 (111-168)||(40856943-40857000)
chr7 (325-383)||(41508117-41508176)
chr7 (62-121)||(40856479-40856538)
chr7 (9-78)||(40856387-40856456)
chr7 (325-362)||(46341514-46341551)
chr7 (327-381)||(12485295-12485350)
chr7 (327-381)||(12506727-12506782)
chr7 (325-370)||(6549155-6549200)
chr7 (323-387)||(9183305-9183370)
chr7 (37-73)||(48072505-48072541)
[»] chr8 (12 HSPs)
chr8 (9-174)||(41179573-41179739)
chr8 (9-186)||(24337828-24338006)
chr8 (21-174)||(18168392-18168547)
chr8 (21-174)||(18631949-18632104)
chr8 (10-187)||(11254025-11254202)
chr8 (22-163)||(4708328-4708470)
chr8 (14-116)||(1514803-1514905)
chr8 (15-138)||(32825881-32826005)
chr8 (323-387)||(1445368-1445433)
chr8 (323-372)||(30112509-30112558)
chr8 (325-383)||(31658870-31658929)
chr8 (325-366)||(8251253-8251294)
[»] scaffold0032 (1 HSPs)
scaffold0032 (9-174)||(34189-34353)
[»] chr6 (11 HSPs)
chr6 (9-187)||(5403873-5404052)
chr6 (9-174)||(1211854-1212020)
chr6 (14-174)||(34245567-34245729)
chr6 (8-186)||(32644836-32645013)
chr6 (15-174)||(11113557-11113713)
chr6 (14-79)||(11753167-11753232)
chr6 (136-186)||(10503257-10503307)
chr6 (257-380)||(606692-606817)
chr6 (325-383)||(180357-180416)
chr6 (325-383)||(6454448-6454506)
chr6 (328-380)||(34837225-34837278)
[»] scaffold0229 (1 HSPs)
scaffold0229 (9-187)||(13002-13182)
[»] scaffold0519 (1 HSPs)
scaffold0519 (10-187)||(11191-11368)
[»] scaffold0263 (2 HSPs)
scaffold0263 (15-166)||(23117-23263)
scaffold0263 (15-63)||(23094-23142)
[»] scaffold0041 (1 HSPs)
scaffold0041 (8-112)||(73065-73170)
[»] scaffold0836 (1 HSPs)
scaffold0836 (301-372)||(3015-3086)
[»] scaffold1809 (1 HSPs)
scaffold1809 (324-380)||(572-629)
[»] scaffold0088 (1 HSPs)
scaffold0088 (323-372)||(51288-51337)
[»] scaffold0024 (1 HSPs)
scaffold0024 (327-367)||(154359-154399)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 19357435 - 19357261
Alignment:
Q  11 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata 110  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata 19357336  T
Q  111 ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatc 185  Q
    ||||||||||||||| |||| ||||||| ||||||||| ||||| ||||||||||||||||||| ||| ||||||    
T  19357335 ttttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 33858704 - 33858535
Alignment:
Q  19 tgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-tttttta 117  Q
    |||||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  118 aaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatccg 33858535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 11607710 - 11607532
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgata 11607611  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    || ||||||||||| ||||||||  | |||| ||||||||| ||||| |||||| |||||||||||| ||| |||||||    
T  11607610 tacttttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctatcc 11607532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 39570219 - 39570077
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 39570120  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggc 150  Q
    || ||||||||||| |||||||| ||||| | |||||||||||    
T  39570119 tacttttttaaagggtgtgccacctgacatattctaattgggc 39570077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 38010785 - 38010610
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||  |    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 38010686  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||||  ||||||||||| ||||   |||||||  ||||||||||| ||| |||||||| ||| ||||||||    
T  38010685 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccg 38010610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 1826254 - 1826420
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||||| || |||||||||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgata 1826353  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    || |||||||||| |||||||||||| |||| | ||||||  ||||| |||||| ||||||| ||||    
T  1826354 tatttttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgataca 1826420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 33271630 - 33271787
Alignment:
Q  30 aaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgcc 128  Q
    ||||||| |||| |||||| |||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  129 acatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    || || |||| ||||||||||||||  ||||||||||||||||||| ||| |||||||    
T  33271730 acgtggcacattctaattgggcaatagtatataccattatggtacataagtgctatcc 33271787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 29989962 - 29990137
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatgt 29990061  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||||  ||||||||||| ||||   |||||||  ||||||||||| ||| |||||||| ||| ||||||||    
T  29990062 tttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgctatccg 29990137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 13015376 - 13015530
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttg--a 106  Q
    |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||  ||||||||  |    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgata 13015475  T
Q  107 tatattttttaaaggatgtgccacatgacacaatctaattgggcaatgttatata 161  Q
    |||||||||||||| |||||||||||| ||||   |||||||  |||||||||||    
T  13015476 tatattttttaaagtatgtgccacatgtcacatcttaattggctaatgttatata 13015530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 9827778 - 9827890
Alignment:
Q  4 atattggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatt 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||||| |||||||||||||  ||||||    
T  9827778 atattggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatt 9827877  T
Q  104 tgatatatttttt 116  Q
    |||||||| ||||    
T  9827878 tgatatatctttt 9827890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 13086753 - 13086879
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata--tat 111  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||| |||||||||  |||||||||||  |||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatatgtat 13086852  T
Q  112 tttttaaaggatgtgccacatgacaca 138  Q
    |||||||||  ||||||||||| ||||    
T  13086853 tttttaaagtgtgtgccacatgtcaca 13086879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 13478216 - 13478041
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    |||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||| ||||| |||||||||||||||  |||||||||||||  |    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatatatgt 13478117  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||||  ||||||||||| ||||   ||||| |  ||||||||||| ||| || ||||| | | ||||||||    
T  13478116 tttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatcgtacacatgtgctatccg 13478041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 10292897 - 10293033
Alignment:
Q  38 aatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaaggatgtgccacatgacac 137  Q
    |||| |||||| ||||||||||| ||| |||||||| ||| ||||||| ||| ||| || |||||||||||| ||||||||||| |||||||| || |||    
T  10292897 aatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatattttttttaaagggtgtgccacgtggcac 10292996  T
Q  138 aatctaattgggcaatgttatataccattatggtaca 174  Q
    |   ||||||| |||||||||||| ||||||||||||    
T  10292997 accttaattggccaatgttatataacattatggtaca 10293033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 13421180 - 13421007
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--tt 112  Q
    |||||||||||||||||||||  |||| |||||| |||||  |||| |||||||  ||  || ||||||||||||||||||||||||||| |||||  ||    
T  13421180 cacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatatatgtt 13421081  T
Q  113 ttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    ||||||||  | ||||||||||||||   || |||   ||||||||||| ||| |||||||| ||| |||||||    
T  13421080 ttttaaagtgtatgccacatgacacaccttacttgactaatgttatataacataatggtacacaagtgctatcc 13421007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 19296290 - 19296227
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgtttctc 386  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  19296290 tgtcacaacttttaaagtgtagttattgcttaaaagacttttctatccatatttaatgtttctc 19296227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 42148201 - 42148295
Alignment:
Q  69 gccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatatac 162  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||| |  |||| ||||||||  ||||| |||||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatatac 42148295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 3629342 - 3629292
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatcccta 373  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  3629342 tgtcacaacttttaaggtgtagttattacttaaaagacttttgtatcccta 3629292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 37881189 - 37881243
Alignment:
Q  62 agagtgtgccacctaccaatgttactttataaatgctttatttgatatatttttt 116  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||||| ||||    
T  37881189 agagtgtgccacataccaatgttactttataaatattttatttgatatatgtttt 37881243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 6688804 - 6688851
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccct 372  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  6688804 tcacaacttttaaggtgtagttattgtttaaaagacttttctatccct 6688851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 73583 - 73632
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccctat 374  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||| ||||    
T  73583 tcacaacctttaaggtgtagttattgcttaaaagacttttctatctctat 73632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 11983709 - 11983649
Alignment:
Q  328 caacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctct 387  Q
    |||||||||||||||| |||||| ||||| || ||||||| |||| |||||||||||||||    
T  11983709 caacttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctct 11983649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 18705020 - 18705075
Alignment:
Q  329 aacttttaaggtgtagttattgcttaaatgacttttttatcc-ctatttaatgttt 383  Q
    ||||||||||||||||||||| |||||| |||||||||| ||  ||||||||||||    
T  18705020 aacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgttt 18705075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 27193026 - 27193073
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatcc 370  Q
    |||||||||||||||| | ||||||||| ||||| |||||||||||||    
T  27193026 tgtcacaacttttaagatatagttattgtttaaaagacttttttatcc 27193073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 34392257 - 34392080
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgata 34392158  T
Q  109 tatt-ttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatc 185  Q
    |||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| ||||||    
T  34392157 tatttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 7381686 - 7381851
Alignment:
Q  8 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 107  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  7381686 tggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgat 7381785  T
Q  108 atattttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtac 173  Q
    ||||||||||||||||||| ||  ||||||| | ||||||||||||  ||||||||||||| ||||    
T  7381786 atattttttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtac 7381851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 23863958 - 23863813
Alignment:
Q  28 ttaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-tttttaaaggatgtg 126  Q
    ||||||||| ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtg 23863861  T
Q  127 ccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    ||||||| |||| ||||||||| ||||| |||||| ||||||||||||    
T  23863860 ccacatggcacattctaattggacaatgatatatatcattatggtaca 23863813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 37358097 - 37357915
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||| |||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaata 37357998  T
Q  109 -----tattttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
         | |||||||||  ||||||||| ||||||| ||||||||| ||||| ||||||| |||||| |||| ||| |||||||    
T  37357997 tttttttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctatcc 37357915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 21603952 - 21604072
Alignment:
Q  7 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttga 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||||| |||||||||    
T  21603952 ttggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttga 21604051  T
Q  107 tata-ttttttaaaggatgtg 126  Q
    |||| ||||||| ||||||||    
T  21604052 tatacttttttataggatgtg 21604072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 4775634 - 4775796
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaat-gctttatttgatatatt 112  Q
    |||||| |||||||||||| ||| |||| ||||||  |||||||||||||| |||  || |||||||| ||||||||| ||| | ||||||| |||||||    
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatt 4775733  T
Q  113 tt-ttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    || ||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||    
T  4775734 tttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtaca 4775796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 4779613 - 4779746
Alignment:
Q  42 gtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgccacatgacacaat 140  Q
    |||||||||||||  || ||| |||||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||| |    
T  4779613 gtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgacacatt 4779712  T
Q  141 ctaattgggcaatgttatataccattatggtaca 174  Q
    |||||||| ||||| |||||||||||||| ||||    
T  4779713 ctaattggacaatggtatataccattatgataca 4779746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 25275741 - 25275619
Alignment:
Q  65 gtgtgccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatatacc 163  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| ||||| ||||||||    
T  25275741 gtgtgccacctatcaatgttacttt-taaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatacc 25275643  T
Q  164 attatggtacagaagagctatccg 187  Q
    |||||| |||||||| ||||||||    
T  25275642 attatgatacagaagtgctatccg 25275619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 41095926 - 41095783
Alignment:
Q  45 tataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgccacatgacacaatcta 143  Q
    ||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||| | | ||||||||| ||||  |||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacacccta 41095827  T
Q  144 attgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    | ||| ||||| ||||||||||||||||||  ||| ||||||||    
T  41095826 aatggccaatggtatataccattatggtacctaagtgctatccg 41095783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 14566019 - 14565908
Alignment:
Q  19 tgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-tttttta 117  Q
    ||||||||| |||||||| |||| |||||| |||||  ||| |||||||||| || ||||||| ||| ||||||| | ||| |||||||||| |||||||    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatatagtttttta 14565920  T
Q  118 aaggatgtgcca 129  Q
    ||||||||||||    
T  14565919 aaggatgtgcca 14565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 21606145 - 21606212
Alignment:
Q  119 aggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    |||||||||||| ||||||| ||||||||| ||||| |||||||||||||| |||||||| |||||||    
T  21606145 aggatgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctatcc 21606212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 3268815 - 3268874
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgttt 383  Q
    ||||||||||||||||||||||||||| |||| ||||||| || ||| ||||||||||||    
T  3268815 tcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgttt 3268874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 3269374 - 3269433
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgttt 383  Q
    ||||||||||||||||||||||||||| |||| ||||||| || ||| ||||||||||||    
T  3269374 tcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgttt 3269433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 3269933 - 3269992
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgttt 383  Q
    ||||||||||||||||||||||||||| |||| ||||||| || ||| ||||||||||||    
T  3269933 tcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgttt 3269992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 34903967 - 34904005
Alignment:
Q  79 aatgttactttataaatgctttatttgatatatttttta 117  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34903967 aatgttattttataaatgctttatttgatatatttttta 34904005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 19285873 - 19285942
Alignment:
Q  301 tttggtcctatttatnnnnnnntgtcacaacttttaaggtgtagttattgcttaaatgacttttttatcc 370  Q
    |||||||||||||||       |||||||| |||||||||||||||||||| |||| ||||||| |||||    
T  19285873 tttggtcctatttataagtaattgtcacaagttttaaggtgtagttattgcataaaagacttttatatcc 19285942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 37284452 - 37284512
Alignment:
Q  326 cacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttct 385  Q
    ||||||||||||  |||||||||||| |||| ||||||||||||||| |||||| ||||||    
T  37284452 cacaacttttaaaatgtagttattgcataaaagacttttttatccctcatttaacgtttct 37284512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 10163501 - 10163603
Alignment:
Q  33 gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--ttttttaaaggatgtgccac 130  Q
    |||| |||| |||||| ||||| ||||| | | |||||||| |||  || |||||||||||||  |||||||||||||  |||||||||| |||||| ||    
T  10163501 gtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctac 10163600  T
Q  131 atg 133  Q
    |||    
T  10163601 atg 10163603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 38214130 - 38214177
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccct 372  Q
    ||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  38214130 tcacaacttttaaggtgtatttattgtttaaaagacttttatatccct 38214177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 12473699 - 12473878
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12473798  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    || ||||||||||| |||| ||||||||||| |||||||| |||||| ||||||||||||||||||| ||| ||||||||    
T  12473799 tatttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatccg 12473878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 12528108 - 12528287
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12528207  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    || ||||||||||| |||| ||||||||||| |||||||| |||||| ||||||||||||||||||| ||| ||||||||    
T  12528208 tatttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatccg 12528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 33249550 - 33249397
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33249550 ggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgata 33249451  T
Q  109 tat-tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatata 161  Q
    ||| |||||||||| ||||||||||| ||||||||||||| |||||| ||||||    
T  33249450 tatatttttaaagggtgtgccacatggcacaatctaattgagcaatgatatata 33249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 22343334 - 22343498
Alignment:
Q  11 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata 110  Q
    |||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatata 22343433  T
Q  111 tt-ttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    || |||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||    
T  22343434 ttattttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtaca 22343498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 21260789 - 21260951
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||||||||| | |||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 21260888  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatgg 170  Q
    || ||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  21260889 tatttttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatgg 21260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 35869749 - 35869583
Alignment:
Q  7 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttga 106  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||| |||||||||    
T  35869749 ttggtttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttga 35869650  T
Q  107 tata-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggta 172  Q
    |||| ||||||||||| |||||||| ||||||| ||||||||  ||||| |||||||||||||||||    
T  35869649 tatacttttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggta 35869583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 51811909 - 51812070
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||||| ||||||||||||||||  || | ||||||  |||||||||||||||| ||||||||||||||||||||||||||||  ||| |||||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgata 51812008  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatg 169  Q
    || ||||||||||| |||||||  ||||||| |||||||||  |||| ||||||||||||||    
T  51812009 tatttttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatg 51812070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 55590477 - 55590644
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||  |||||| |||||| |||||||||||||||           ||||||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta-----------ctttatttgata 55590565  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    || |||||||||||||||||||| ||||||| |||||||||||||||  |||||||||||||||||  ||| |||||||    
T  55590566 tacttttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctatcc 55590644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 52012778 - 52012952
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| | |||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatatatgt 52012877  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    |||||||||  ||||||||||| ||||   ||||| |  ||||||||||| ||| |||||||| ||| |||||||    
T  52012878 tttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatcc 52012952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 52910219 - 52910050
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttt 114  Q
    |||||||||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |        
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgataaaaaaa 52910120  T
Q  115 ttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctat 184  Q
    ||||| | | |||||| || ||||  |||||||  ||||| |||||||||| |||||||| ||| |||||    
T  52910119 ttaaaaggtatgccacgtggcacaccctaattgatcaatggtatataccataatggtacataagtgctat 52910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 9799534 - 9799358
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||  ||| |||||||| |||||||||||||||||||||| ||||||| |||||  |    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatgt 9799435  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccgc 188  Q
    |||||||||  |||| |||||| ||||   ||||| |  ||||||||||| ||| |||||||| ||| |||||||||    
T  9799434 tttttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatccgc 9799358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 49999758 - 49999662
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat 111  Q
    |||||||||||||| ||| |||||||| ||| |  |||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 34829259 - 34829168
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgcttt 100  Q
    ||||| ||||| ||||| |||||||||| |||| |||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  34829259 ggatttcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 1796163 - 1796222
Alignment:
Q  45 tataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttattt 104  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgttactttataaatgttttattt 1796222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 46719954 - 46720023
Alignment:
Q  38 aatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 107  Q
    |||| |||||| ||||| ||||| |||||||||||| ||| ||||||||||||||||| |||||||||||    
T  46719954 aatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 1796648 - 1796724
Alignment:
Q  111 ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||||||||||| ||| || |||||| ||||||| ||||| ||||||||||||||||||| ||| | ||||||    
T  1796648 ttttttaaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatccg 1796724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 16572267 - 16572325
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatg 380  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||| ||||||||    
T  16572267 tgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatg 16572325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 33174513 - 33174630
Alignment:
Q  9 ggattccacttgtgtaccattaaggt-actaatggtatataccattggccaattagagtgtgccacctaccaat----gttactttataaatgctttatt 103  Q
    |||||||||||||||||||||||||| || ||  ||||||||||||||        |||||  |||||||||||    ||||||||||||||| ||||||    
T  33174513 ggattccacttgtgtaccattaaggttaccaagagtatataccattgg--------agtgtatcacctaccaatatatgttactttataaatgttttatt 33174604  T
Q  104 tgatatattttttaaaggatgtgccac 130  Q
    ||||||| |||||||||| ||||||||    
T  33174605 tgatata-tttttaaagggtgtgccac 33174630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 31707480 - 31707421
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgttt 383  Q
    |||||||||||||||||||||||||||||| | ||||||| || ||| ||||||||||||    
T  31707480 tcacaacttttaaggtgtagttattgcttagaagacttttctaccccttatttaatgttt 31707421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  18 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 73  Q
    ||||||||||||||||||| |||  |||||| |||||||||||||| |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 42312539 - 42312494
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatcc 370  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||    
T  42312539 tcacaacttttaaggtatagttattgcttaaaagacttttctatcc 42312494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 35781021 - 35781069
Alignment:
Q  125 tgccacatgacacaatctaattgggcaatgttatataccattatggtac 173  Q
    |||||| || |||| ||||||||||||||| ||||||||||||||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtac 35781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 47943158 - 47943285
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattgg-ccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-- 110  Q
    ||||||||||||||||||  ||| |||| ||||||  ||| | ||||| | | |||||||| ||||||| ||| |||||||||  |||||||||||||      
T  47943158 ccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgatatatg 47943257  T
Q  111 ttttttaaaggatgtgccacatgacaca 138  Q
    |||||||||   ||||||||||| ||||    
T  47943258 ttttttaaaatgtgtgccacatgtcaca 47943285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 35781063 - 35781027
Alignment:
Q  37 taatggtatataccattggccaattagagtgtgccac 73  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  35781063 taatggtatataccattgcccaattagaatgtgccac 35781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 383
Target Start/End: Complemental strand, 44884474 - 44884423
Alignment:
Q  332 ttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgttt 383  Q
    ||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  44884474 ttttaaggtgtagttattgtttaaaagac-tttttatccctcatttaatgttt 44884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 46720200 - 46720290
Alignment:
Q  99 ttatttgatatat---tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    |||||||||||||   |||||||||  ||||||||||||||||   ||||||   ||||||||||| ||| |||||| ||||| |||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacataatggtaaagaagtgctatcc 46720290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 187 - 387
Target Start/End: Complemental strand, 17003846 - 17003644
Alignment:
Q  187 gcatatattatgcaatgtccctgccaagttagtagtgttattaatgtcatttggtatagcaatattactaaatactctctccggtccttaataaaagaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  17003846 gcatatattatgcaatgtccctgccaagttagtagtgttattaatgtcatttggtatagcaatattactaaatactctcttcggtctttaatataagaaa 17003747  T
Q  287 attttc-nnnnnnnntttggtcctatttat-nnnnnnntgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgtttc 384  Q
    ||||||         | |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003746 attttcaaaaaaaaatctggtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgtttc 17003647  T
Q  385 tct 387  Q
    |||    
T  17003646 tct 17003644  T

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Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 44380248 - 44380428
Alignment:
Q  8 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 107  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||| |||||| |||| |||||||||||||||||||||||||    
T  44380248 tggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgat 44380347  T
Q  108 ata-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    ||| ||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||||||||||||||| ||| | ||||||    
T  44380348 atacttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatccg 44380428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 33509684 - 33509851
Alignment:
Q  18 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-tttttt 116  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttt 33509783  T
Q  117 aaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctat 184  Q
    ||||||||||||||||| |||| ||||||| | ||||| ||||||||||||| ||||| ||| |||||    
T  33509784 aaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctat 33509851  T

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Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 47426345 - 47426496
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||    
T  47426345 ggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgata 47426444  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttata 159  Q
    || ||||||||||| |||||||||||  ||| ||||||||||||||| ||||    
T  47426445 tatttttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

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Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 47186175 - 47186350
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||  |    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 47186274  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||||  ||||||||||| ||||   |||||||  ||||||||||| ||| |||||||| ||| ||||||||    
T  47186275 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccg 47186350  T

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Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 50934495 - 50934600
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  50934495 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgata 50934594  T
Q  109 tatttt 114  Q
    ||||||    
T  50934595 tatttt 50934600  T

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Target: chr3; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 35094541 - 35094709
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaatta--gagtgtgccacctaccaatgttactttataaatgctttatttga 106  Q
    |||||||||||  |||||||||| |||| | ||||||||||||||| | |||||  |||| ||||||||||||||||||||||||||||  |||||||||    
T  35094541 ggattccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttga 35094640  T
Q  107 tata-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||| |||||||||||||||| ||| ||||||| ||||||||| ||||| || ||||||||||||||||    
T  35094641 tatatttttttaaaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtaca 35094709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 37742726 - 37742898
Alignment:
Q  12 ttccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata- 110  Q
    |||||||||||||   ||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||| |||  ||||||||||||||||||     
T  37742726 ttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat 37742822  T
Q  111 ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    ||||||||||  |||||||| || |||| | ||||||||||||| |||||||||||||| |||| ||| |||||||    
T  37742823 ttttttaaagagtgtgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctatcc 37742898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 31187241 - 31187079
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat--atat 111  Q
    |||||| |||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||  ||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatat 31187142  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||||||||  ||||||||||| ||||   |||||||  ||||||||||| ||| ||||||||    
T  31187141 tttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtaca 31187079  T

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Target: chr3; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 42664673 - 42664847
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    ||||||||||||||||||||||| || | |||||| ||||| ||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||  |    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatatatgt 42664772  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    |||||||||  ||||||||||| ||||   ||||| |  ||||||||||| ||| |||||||| ||| |||||||    
T  42664773 tttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatcc 42664847  T

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Target: chr3; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 17466268 - 17466434
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||| |||||||| ||| |  ||  ||||||||||| |||||| ||||||||||||| |||||| ||||||||||||||||||| |||| ||||||    
T  17466268 ggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgata 17466367  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    || ||||||||||| | |||||| |  |||||||||| || |||||| |||||||||||| ||||||    
T  17466368 tatttttttaaagggtatgccacgtaccacaatctaactgagcaatggtatataccattacggtaca 17466434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 39498838 - 39498689
Alignment:
Q  16 acttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttt 115  Q
    |||||||||||||||| |||| |||| ||||||  ||||| |||||| |||||| |||||| | |||||| |||||||||  ||||||| ||||| ||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatataatttt 39498739  T
Q  116 taaaggatgtgccacatgacacaatctaattgggcaatgttatataccat 165  Q
    ||||||||||||||| ||||||| |||||||| |||||  ||||||||||    
T  39498738 taaaggatgtgccacgtgacacattctaattgagcaatagtatataccat 39498689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 34029462 - 34029288
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    |||||||| |||||||||||||| |||| |||||| |||||  |||| |||||||||||| ||| |||||||||||||||||| |||||||||||||  |    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatatatgt 34029363  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    |||||||||  |||| |||||  ||||   |||||||  ||||||||||| ||| |||||||| ||| |||||||    
T  34029362 tttttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 34029288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 387
Target Start/End: Original strand, 45261312 - 45261443
Alignment:
Q  257 aatactctctccggtccttaataaaagaaaattttcnnnnnnnnttt-ggtcctatttatnnnnnnntgtcacaacttttaaggtgtagttattgcttaa 355  Q
    ||||||| ||||||||||||||| ||||||||||||        ||| ||||||||||||       |||||||||||||||| ||||||||||||||||    
T  45261312 aatactccctccggtccttaatataagaaaattttcaaatttttttttggtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaa 45261411  T
Q  356 atgacttttttatccctatttaatgtttctct 387  Q
    ||||||||| ||||||||||||||||||||||    
T  45261412 atgacttttctatccctatttaatgtttctct 45261443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 32319541 - 32319468
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatg 82  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 80  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 35455323 - 35455383
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgttt 383  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  35455323 tgtcacaacttttaaggtgtaattattgcttaaatgacttttctatccctatttaatgttt 35455383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 10018742 - 10018671
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 80  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||| |||| | |||||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 25295181 - 25295120
Alignment:
Q  327 acaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctct 387  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||| ||||||    
T  25295181 acaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctct 25295120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 10123282 - 10123211
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 80  Q
    ||||||||||||||||||||||| |||  |||| |||||| || ||| |||| | |||||||||||||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 19619214 - 19619272
Alignment:
Q  129 acatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||| | | ||||||||    
T  19619214 acatgacacattttaattgggcaatggtatataccattatggtacacatgtgctatccg 19619272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 25859019 - 25859068
Alignment:
Q  117 aaaggatgtgccacatgacacaatctaattgggcaatgttatataccatt 166  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||| ||||    
T  25859019 aaagggtgtgccacatgacacactctaattggccaatgttatataacatt 25859068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 36659206 - 36659258
Alignment:
Q  328 caacttttaaggtgtagttattgcttaaatgacttttttat-ccctatttaat 379  Q
    |||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  36659206 caacttttaaggtgtagttactgcttaagagacttttttatcccctatttaat 36659258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 8825490 - 8825444
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatcc 370  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  8825490 tgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatcc 8825444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 32211920 - 32211881
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgactttt 364  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  32211920 tcacaacttttaaggtgtagttattgtttaaaagactttt 32211881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 40345063 - 40345022
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgactttt 364  Q
    ||||||||||||||||||||||| |||||||||  |||||||    
T  40345063 tgtcacaacttttaaggtgtagtcattgcttaagagactttt 40345022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 43320264 - 43320223
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgactttt 364  Q
    |||||||||||||||||||| ||||||| ||||| |||||||    
T  43320264 tgtcacaacttttaaggtgtggttattgtttaaaagactttt 43320223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 46918617 - 46918549
Alignment:
Q  301 tttggtcctatttatnnnnnnntgtcacaacttttaaggtgtagttattgcttaaatgacttttttatcc 370  Q
    |||||||||||||||       |||||||| ||||||||  ||||||||||||||| |||||||||||||    
T  46918617 tttggtcctatttataagaaaatgtcacaatttttaagga-tagttattgcttaaaagacttttttatcc 46918549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 32676130 - 32676297
Alignment:
Q  8 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  32676130 tggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgat 32676229  T
Q  108 ata-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    ||| |||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||| |||||    
T  32676230 atatttttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtaca 32676297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 29119500 - 29119334
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgata 29119401  T
Q  109 tatt-ttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||||||  |||||||| ||||||||||    
T  29119400 tatttttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtaca 29119334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 2569037 - 2569210
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattt 113  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatatattt 2569136  T
Q  114 tttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||| |||||||  || |||| ||||||| ||||||  |||||| ||||||| |||| ||| ||||||||    
T  2569137 tttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatccg 2569210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 8809811 - 8809639
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatatatgt 8809712  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctat 184  Q
    |||||||||  ||||||||||| ||||   |||||||  ||||||||||| ||| |||||||| ||| |||||    
T  8809711 tttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgctat 8809639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 46435629 - 46435475
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||||            ||||| |||||||||||||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct------------ttatagatgctttatttgata 46435542  T
Q  109 tat-tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    ||| |||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  46435541 tatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtaca 46435475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 8462124 - 8462277
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||||  |||||| |||||||||||||||||||||| |||||||||| ||||||| |||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaata 8462222  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatatac 162  Q
    || |||||||||||  ||||||| ||||||| | ||||||| ||||| |||||||    
T  8462223 tacttttttaaagggcgtgccacgtgacacattttaattggacaatggtatatac 8462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 25161304 - 25161402
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 107  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 9851945 - 9851881
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgtttctct 387  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9851945 tgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccctatttaatgtttctct 9851881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 35998252 - 35998427
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    |||||||| |||||||||||||| |||| |||||| |||||   ||| |||||||||||| || |||||||| ||||||| || ||||||| |||||  |    
T  35998252 ccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgt 35998351  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||||||  ||||||||||| ||||   |||||||  ||||||||||| ||| |||||||| | | ||||||||    
T  35998352 tttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtacacaggtgctatccg 35998427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 35534413 - 35534561
Alignment:
Q  21 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaag 120  Q
    |||| ||||||| ||| |||| |||||| |||||| || | |||||||||||| ||| ||||| | ||||||| || ||||||| ||||  |||||||||    
T  35534413 tgtatcattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaatat--tttttaaag 35534510  T
Q  121 gatgtgccacatgacacaatctaattgggcaatgttatataccattatggt 171  Q
    | ||||||||||||||||   ||||||| |||| ||||||| |||||||||    
T  35534511 ggtgtgccacatgacacaccttaattggccaatattatataacattatggt 35534561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 7214585 - 7214501
Alignment:
Q  11 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaat 95  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||||||| |||||| | || |||||||||||||    
T  7214585 attccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttataaat 7214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 28469949 - 28470013
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgtttctct 387  Q
    |||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||    
T  28469949 tgtcacaaattttaaggtgtagttattacttaaatgtcttttctatccttatttaatgtttctct 28470013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  43 tatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttga 106  Q
    |||||| ||||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 381
Target Start/End: Complemental strand, 36437400 - 36437274
Alignment:
Q  256 aaatactctctccggtccttaataaaagaaaattttcnnnnnnnnttt-ggtcctatttatnnnnnnntgtcacaacttttaaggtgtagttattgctta 354  Q
    |||||||| ||||||||||||||| ||||||||||||        ||| ||||||||||||       |||||||||||||||||  |||||||||||||    
T  36437400 aaatactccctccggtccttaatataagaaaattttcaaaaaaagttttggtcctatttataagaaaatgtcacaacttttaagga-tagttattgctta 36437302  T
Q  355 aatgacttttttatccct-atttaatgt 381  Q
    || ||||||||||||||| |||||||||    
T  36437301 aaagacttttttatccctcatttaatgt 36437274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 17988416 - 17988351
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgtttctct 387  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| ||||||    
T  17988416 tgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatgcttctct 17988351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 39150311 - 39150252
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgttt 383  Q
    |||| ||||||||||||||||||||||||||| ||||||| || ||| ||||||||||||    
T  39150311 tcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgttt 39150252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 46443718 - 46443766
Alignment:
Q  324 gtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct 372  Q
    |||||||||||||||||||| ||||| ||||||  ||||||||||||||    
T  46443718 gtcacaacttttaaggtgtaattattacttaaaaaacttttttatccct 46443766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 8555471 - 8555534
Alignment:
Q  56 ccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaa 119  Q
    ||||||| | |||| ||| ||||||||||| |||||||||| |||||||||| |||||| ||||    
T  8555471 ccaattaaaatgtgtcacataccaatgttattttataaatgttttatttgatgtattttataaa 8555534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 31152453 - 31152516
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctct 387  Q
    |||||||||||||| ||| ||||||||||||| ||||||  || |||| |||||||||||||||    
T  31152453 tcacaacttttaagatgtcgttattgcttaaaagactttgctacccctcatttaatgtttctct 31152516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 6223052 - 6223149
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatt 112  Q
    ||||||||||||||||| |||  |||| |||||| |||||  ||||||  ||||| ||  || |||||||| ||||||| |  |||||||||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatatt 6223149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 28165258 - 28165209
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct 372  Q
    |||||||||||| ||||| ||||||||||||||| || ||||||| ||||    
T  28165258 tgtcacaactttaaaggtatagttattgcttaaaagatttttttacccct 28165209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 16679765 - 16679828
Alignment:
Q  87 tttataaatgctttatttgatat--attttttaaaggatgtgccacatgacacaatctaattgg 148  Q
    ||||||| |||||||||||||||  |||||||||||| |||| ||| |||||||  ||||||||    
T  16679765 tttataagtgctttatttgatatatattttttaaagggtgtgtcacgtgacacatcctaattgg 16679828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 16679868 - 16679821
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 63  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 31932251 - 31932311
Alignment:
Q  111 ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggt 171  Q
    ||||||||||||||||| || || |||| |||||||| | |||  ||||||||||||||||    
T  31932251 ttttttaaaggatgtgctacgtggcacattctaattgtgtaatagtatataccattatggt 31932311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 34702222 - 34702258
Alignment:
Q  328 caacttttaaggtgtagttattgcttaaatgactttt 364  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  34702222 caacttttaagttgtagttattgcttaaaagactttt 34702258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 35341531 - 35341695
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgata 35341630  T
Q  109 ta-ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggta 172  Q
    || ||||||||||| |||||||| ||||||| ||||||||| ||||| |||||| ||||||||||    
T  35341631 tacttttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggta 35341695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 48250149 - 48250329
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| ||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48250149 ggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 48250248  T
Q  109 -tattttttaaaggatgtgccaca--tgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
     | ||||||||||| | ||| |||  || |||| ||||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  48250249 tttttttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 48250329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 32694721 - 32694567
Alignment:
Q  34 tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatt-ttttaaaggatgtgccacat 132  Q
    |||||||| |||||||||||||  ||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |    
T  32694721 tactaatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgt 32694622  T
Q  133 gacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||||| ||||||| ||||||| ||||||||||||| ||||| ||| ||||||||    
T  32694621 gacacattctaattaggcaatggtatataccattatagtacacaagtgctatccg 32694567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 48072385 - 48072560
Alignment:
Q  10 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatat 109  Q
    |||||||||||||||| |||||||||| ||| |||||  ||||||  ||||||||||||||||| |  |||||||| |||||||||  |||||||||| |    
T  48072385 gattccacttgtgtactattaaggtaccaatagtata--ccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgt 48072482  T
Q  110 atttt-ttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    ||||| ||||||| |||||||| || |||| ||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  48072483 atttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 48072560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 40893219 - 40893114
Alignment:
Q  8 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgc-tttatttga 106  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| |||||||| |||  || ||| |||||||||||||||||||| |||||||||    
T  40893219 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttga 40893120  T
Q  107 tatatt 112  Q
    ||||||    
T  40893119 tatatt 40893114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 20949088 - 20949152
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgtttctct 387  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  20949088 tgtcataacttttaaggtgtagttattgcttaaatgatttttttatccctatttaatgtctctct 20949152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  18 ttgtgtaccattaaggtactaatggtatataccattggccaatt-agagtgtgccacctaccaatgttactttataaatgctttatttgat 107  Q
    |||||||||||||| |||  |||| |||||| ||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 40856943 - 40857000
Alignment:
Q  111 ttttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattat 168  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||||    
T  40856943 ttttttaaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 41508117 - 41508176
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgttt 383  Q
    |||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  41508117 tcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgttt 41508176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 40856479 - 40856538
Alignment:
Q  62 agagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaagg 121  Q
    |||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||| ||||    
T  40856479 agagtgtgtcacctaccaatgttattttatagatgttttatttgatgtatttttttaagg 40856538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 40856387 - 40856456
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 78  Q
    |||| |||||| |||| |||||||||||||||| ||||||  ||||  ||||||||||||| ||||||||    
T  40856387 ggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 46341514 - 46341551
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgactt 362  Q
    |||||||||||||||||||||||||||||||| |||||    
T  46341514 tcacaacttttaaggtgtagttattgcttaaaagactt 46341551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 12485295 - 12485350
Alignment:
Q  327 acaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgt 381  Q
    |||||||||||||||||||||||| | ||| ||||||| |||||| ||||||||||    
T  12485295 acaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgt 12485350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 12506727 - 12506782
Alignment:
Q  327 acaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgt 381  Q
    |||||||||||||||||||||||| | ||| ||||||| |||||| ||||||||||    
T  12506727 acaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgt 12506782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 6549200 - 6549155
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatcc 370  Q
    |||||||||||||||| |||||||| |||||| || ||||||||||    
T  6549200 tcacaacttttaaggtatagttatttcttaaaagatttttttatcc 6549155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 9183370 - 9183305
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctct 387  Q
    ||||||| |||||||||| ||||||||||||| | ||| ||||||||| | |||||||| ||||||    
T  9183370 tgtcacatcttttaaggtatagttattgcttagaagacatttttatccttcatttaatgattctct 9183305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 48072541 - 48072505
Alignment:
Q  37 taatggtatataccattggccaattagagtgtgccac 73  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48072541 taatggtatataccattgcccaattagaatgtgccac 48072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 41179739 - 41179573
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||| |||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaata 41179640  T
Q  109 tatt-ttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||| |||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  41179639 tatttttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtaca 41179573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 24338006 - 24337828
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| |||||||||||| |||||||||  ||||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  24338006 ggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgata 24337907  T
Q  109 tat-tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    ||| |||||||||| ||||||||||  |||| ||||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  24337906 tatatttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 24337828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 18168392 - 18168547
Alignment:
Q  21 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--ttttttaa 118  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||  ||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  119 aggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||||||||||| ||||||||||||||| || |||  |||||||||||||||||||    
T  18168492 aggatgtgccacgtgacacaatctaattaggtaataatatataccattatggtaca 18168547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 18631949 - 18632104
Alignment:
Q  21 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--ttttttaa 118  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||  ||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  119 aggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||||||||||| ||||||||||||||| || |||  |||||||||||||||||||    
T  18632049 aggatgtgccacgtgacacaatctaattaggtaataatatataccattatggtaca 18632104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 11254202 - 11254025
Alignment:
Q  10 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatat 109  Q
    ||||||||||||||||||||||  ||| |||| |||||| ||||| ||| ||| ||| | ||||||||||||||||||||||||||| ||||||||||||    
T  11254202 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11254104  T
Q  110 at-tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |  |||||||||| |||||||| ||||||| ||||| || |||||| ||||||||||||||||||| ||  ||||||||    
T  11254103 acatttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatccg 11254025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 4708470 - 4708328
Alignment:
Q  22 gtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-tttttaaag 120  Q
    |||||| |||||||| ||||| ||||| |||  |||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaag 4708371  T
Q  121 gatgtgccacatgacacaatctaattgggcaatgttatatacc 163  Q
    | |||||||| || |||| ||||||| ||||||| ||| ||||    
T  4708370 ggtgtgccacgtggcacattctaattaggcaatggtatttacc 4708328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 1514803 - 1514905
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattt 113  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| ||||||| |||| |||||||||||||||||||||| |||||||||||||| |    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatatatat 1514902  T
Q  114 ttt 116  Q
    |||    
T  1514903 ttt 1514905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 32826005 - 32825881
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttt 114  Q
    ||||||||||||||||| |||  |||| | |||||||||||||||||||||| || ||| || |||||||| ||||||  || |||||||||||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatatttt 32825906  T
Q  115 tt-aaaggatgtgccacatgacaca 138  Q
    || ||||| |||| |||||||||||    
T  32825905 ttaaaaggttgtgtcacatgacaca 32825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 1445368 - 1445433
Alignment:
Q  323 tgtcacaacttttaaggtgta-gttattgcttaaatgacttttttatccctatttaatgtttctct 387  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  1445368 tgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccctatttaatgtttctct 1445433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 30112558 - 30112509
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct 372  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  30112558 tgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccct 30112509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 31658870 - 31658929
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatcc-ctatttaatgttt 383  Q
    |||||||||||||| ||||||||||| ||||| |||||||||| ||  ||||||||||||    
T  31658870 tcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgttt 31658929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 8251253 - 8251294
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgactttttt 366  Q
    ||||||||||||||||||| |||||||||||| ||| |||||    
T  8251253 tcacaacttttaaggtgtaattattgcttaaaagaccttttt 8251294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 34189 - 34353
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgata 34288  T
Q  109 tattttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    ||||||||||||| |||| ||| ||||||| |||||||||  ||||||||||||| ||||||||||    
T  34289 tattttttaaagggtgtgtcacgtgacacattctaattggataatgttatatacc-ttatggtaca 34353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 5404052 - 5403873
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||| || ||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  5404052 ggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgata 5403953  T
Q  109 tatt-ttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |||| |||||||||  ||  ||||||||||| ||||||||| ||||| ||||||||||||||||||| ||| ||||||||    
T  5403952 tatttttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatccg 5403873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 1212020 - 1211854
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||  ||||||||||||||  |||||||||||||||    
T  1212020 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgata 1211921  T
Q  109 tatt-ttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||| ||||||||| |||||||| || |||| |||||| |||||||| |||||||||||||||||||    
T  1211920 tatttttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtaca 1211854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 34245567 - 34245729
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 111  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||  |    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatatatgt 34245666  T
Q  112 tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||||||||  ||||||||||||||||   |||||||  |||||||||||  || ||||||||    
T  34245667 tttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataatataatggtaca 34245729  T

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Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 32645013 - 32644836
Alignment:
Q  8 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 107  Q
    |||||||||| |||||||||||||| ||   || ||||||| |||||||||||||  ||||| ||||||| |||||||||||| |||| ||||||||| |    
T  32645013 tggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgtt 32644915  T
Q  108 atatttttt-aaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    ||||||||| ||||| |||||||||||| ||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||    
T  32644914 atatttttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattat-gtacacaagtgctatcc 32644836  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 11113557 - 11113713
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttt 114  Q
    |||||||||||||||||||||| |||| |||||| ||||| | ||| |||||||| ||| ||| ||||||||||| ||| |||||||||||||   ||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat---tttt 11113653  T
Q  115 ttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtaca 174  Q
    |||||||||| |||||||| ||||   ||||||  |||||||||||||||||||||||||    
T  11113654 ttaaaggatgcgccacatggcacaccttaattgaccaatgttatataccattatggtaca 11113713  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  14 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacca 79  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 10503307 - 10503257
Alignment:
Q  136 acaatctaattgggcaatgttatataccattatggtacagaagagctatcc 186  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  10503307 acaatctaattggacaatggtatataccattatggtacacaagtgctatcc 10503257  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 380
Target Start/End: Complemental strand, 606817 - 606692
Alignment:
Q  257 aatactctctccggtccttaataaaagaaaattttcnnnnnnnnttt-ggtcctatttatnnnnnnntgtcacaacttttaaggtgtagttattgcttaa 355  Q
    ||||||| ||| ||||||||||| ||||||||||||        ||| ||||||||||||       ||||||||||||||||||||| |||| ||||||    
T  606817 aatactccctctggtccttaatataagaaaattttcaaaattttttttggtcctatttataagaaaatgtcacaacttttaaggtgtacttatagcttaa 606718  T
Q  356 atgacttttttatccc-tatttaatg 380  Q
    |  ||||||| ||||| |||||||||    
T  606717 aatactttttaatcccttatttaatg 606692  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 180357 - 180416
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatgttt 383  Q
    |||||| ||||||| ||||||||||||||||| ||||||| || ||| ||||||||||||    
T  180357 tcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgttt 180416  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 6454506 - 6454448
Alignment:
Q  325 tcacaacttttaaggtgtagttattgcttaaatgacttttttatccctatttaatgttt 383  Q
    ||||||||||| || |||| ||||| |||||| |||||||||| || ||||||||||||    
T  6454506 tcacaactttttagatgtaattattacttaaaagacttttttacccttatttaatgttt 6454448  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 34837278 - 34837225
Alignment:
Q  328 caacttttaaggtgtagttattgcttaaatgacttttttatccc-tatttaatg 380  Q
    ||||||||||||||||| ||||| ||||| |||||||||| ||| |||||||||    
T  34837278 caacttttaaggtgtagctattgtttaaaagacttttttaccccttatttaatg 34837225  T

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Target: scaffold0229 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 13182 - 13002
Alignment:
Q  9 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 108  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||  ||||||||||||||  |||||||||||||||    
T  13182 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgata 13083  T
Q  109 tatttttt--aaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    ||||||||  || || |||||||| || |||| |||||| |||||||| ||||||||||||||||||| ||| ||||||||    
T  13082 tatttttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctatccg 13002  T

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Target: scaffold0519 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 11191 - 11368
Alignment:
Q  10 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatat 109  Q
    ||||||||||||||||||||||  ||| |||| |||||| ||||| ||| ||| ||| | ||||||||||||||||||||||||||| ||||||||||||    
T  11191 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11289  T
Q  110 at-tttttaaaggatgtgccacatgacacaatctaattgggcaatgttatataccattatggtacagaagagctatccg 187  Q
    |  |||||||||| |||||||| ||||||| ||||| || |||||| ||||||||||||||||||| ||  ||||||||    
T  11290 acatttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatccg 11368  T

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Target: scaffold0263 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 23263 - 23117
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttt 114  Q
    |||||||||||||||||||||| |      |||| |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttt 23170  T
Q  115 tt-aaaggatgtgccacatgacacaatctaattgggcaatgttatataccatt 166  Q
    || |||||||  ||||| ||||| |  |||||||| ||||  |||||||||||    
T  23169 ttaaaaggatacgccacgtgacagaccctaattggccaatagtatataccatt 23117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 23094 - 23142
Alignment:
Q  15 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 63  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 73065 - 73170
Alignment:
Q  8 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgc-tttatttga 106  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| |||||||| |||  || ||| |||||||||||||||||||| |||||||||    
T  73065 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttga 73164  T
Q  107 tatatt 112  Q
    ||||||    
T  73165 tatatt 73170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 3015 - 3086
Alignment:
Q  301 tttggtcctatttatnnnnnnntgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct 372  Q
    |||||||||||||||       |||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  3015 tttggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccct 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 629 - 572
Alignment:
Q  324 gtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatg 380  Q
    |||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  629 gtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatg 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 51288 - 51337
Alignment:
Q  323 tgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct 372  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  51288 tgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccct 51337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 154359 - 154399
Alignment:
Q  327 acaacttttaaggtgtagttattgcttaaatgactttttta 367  Q
    |||||||||||||||||||||||| ||||| ||| ||||||    
T  154359 acaacttttaaggtgtagttattgtttaaaagaccttttta 154399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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