View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12326_high_6 (Length: 372)
Name: NF12326_high_6
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 50507618 - 50507973
Alignment:
| Q |
1 |
tgatgatggtggaaagagcaatagggatgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50507618 |
tgatgatggtgaaaagagcaatagggatcaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcg |
50507717 |
T |
|
| Q |
101 |
gaaccattgaagttactcgatgatgacacacaggaagttccgacatattctttttctgaaccagttattgacaatggtctgcttaatcatacagacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50507718 |
gaaccattgaagttactcgatgatgacacacatgaagttccgacatattctttttctgaaccagttattgacaattgtctgcttaatcatacagacaaca |
50507817 |
T |
|
| Q |
201 |
atgttacaaacttgaacgtcaggttccgatttggtgctcctaccgacgaagtgaatgttgattcggaacaacaggccccaaataccgtttcatggggtca |
300 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50507818 |
atgttacaaactttaacgttaggttcccatttgatgctcctaccgacgaagtgaatgttgattcggaacaacaggccccaaataccgtttcctggggtca |
50507917 |
T |
|
| Q |
301 |
aaatggcgacttagtaaggcagtcattgctcagtaacggggaaattaccagttttt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50507918 |
aaatggcgacttagtaaggcagtcattgctcagtaacggggaaattaccagttttt |
50507973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 50475247 - 50475556
Alignment:
| Q |
1 |
tgatgatggtggaaagagcaatagggatgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcg |
100 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| | ||| |||||||||||||||| ||| ||||||||| | |||||||||| | |||||||||| |
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|
| T |
50475247 |
tgatgatggtgaagagaccaatagggatggaataattagccttgatttgaaagaaggatgccgaagaatgtcactatataaagaaccgccggctttgtcg |
50475346 |
T |
|
| Q |
101 |
gaaccattgaagttactcgatgatgacacacaggaagttccgacatattctttttctgaaccagttattgacaatggtctgcttaatcatacagacaaca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| | || |||||||||||||| |||||| ||| |||| | |||| | ||| ||||||| | |
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|
| T |
50475347 |
gaaccattgaagttactc---gatgacatacaggaagttctggcagattctttttctgaagcagttactgaaaatgatttgctcagacattcagacaaaa |
50475443 |
T |
|
| Q |
201 |
atgttacaaacttgaacgtcaggttccgatttggtgctcctaccgacgaagtgaatgttgattcggaacaacaggccccaaataccgtttcatggggtca |
300 |
Q |
| |
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||| |||||||| || || |||||| || |||| ||||||| || || |||||||||| || ||||||||||||||||||| ||| | |||||| |
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| T |
50475444 |
gtgtcacaaactttaatgttaggttctcatctggttctcctactgatgacacaaatgttgatttggcacaacaggccccaaataccatttgcttgggtca |
50475543 |
T |
|
| Q |
301 |
aaatggcgactta |
313 |
Q |
| |
|
|||||| |||||| |
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|
| T |
50475544 |
aaatggtgactta |
50475556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 10783789 - 10783434
Alignment:
| Q |
1 |
tgatgatggtggaaagagcaatagggatgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcg |
100 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10783789 |
tgatgatggtgaaaagagaaataggggtgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcg |
10783690 |
T |
|
| Q |
101 |
gaaccattgaagttactcgatgatgacacacaggaagttccgacatattctttttctgaaccagttattgacaatggtctgcttaatcatacagacaaca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
10783689 |
gaaccattgaagttacttgatgatgacacacatgaagttccggaagattctttttctgaaccagttattgacaatggtctgcttaatcatacatacaaca |
10783590 |
T |
|
| Q |
201 |
atgttacaaacttgaacgtcaggttccgatttggtgctcctaccgacgaagtgaatgttgattcggaacaacaggccccaaataccgtttcatggggtca |
300 |
Q |
| |
|
||||||||||||| || || |||||| ||||||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| |
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|
| T |
10783589 |
atgttacaaactttaatgttgggttcccatttggtgctcctactgacaaagtgaatgttgattcggaaaaccaggccccaaataccgtttcctggggtca |
10783490 |
T |
|
| Q |
301 |
aaatggcgacttagtaaggcagtcattgctcagtaacggggaaattaccagttttt |
356 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| || |||||||||||| |
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|
| T |
10783489 |
aaatggcgacttagtaaggccgacactgctcagtaacgggaaagttaccagttttt |
10783434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 153 - 356
Target Start/End: Complemental strand, 23439376 - 23439173
Alignment:
| Q |
153 |
tttctgaaccagttattgacaatggtctgcttaatcatacagacaacaatgttacaaacttgaacgtcaggttccgatttggtgctcctaccgacgaagt |
252 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| ||||||||||||| |||| ||||||| ||||| ||||||| |||||||||||| | ||| ||||| |
|
|
| T |
23439376 |
tttctgaaccagttattgacaatggtttgcataaacatacagacaacagtgttgcaaactttaacgttaggttcccatttggtgctcccatcgatgaagt |
23439277 |
T |
|
| Q |
253 |
gaatgttgattcggaacaacaggccccaaataccgtttcatggggtcaaaatggcgacttagtaaggcagtcattgctcagtaacggggaaattaccagt |
352 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||| |||||||||||||| |||||||| ||| || || | ||||| ||| ||||| || ||| | |
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|
| T |
23439276 |
gaatgttgatttcgaacaacggcccccaaataccgtttcctggggtcaaaatggtgacttagttaggaagccactactcagaaacagggaagtttccaat |
23439177 |
T |
|
| Q |
353 |
tttt |
356 |
Q |
| |
|
|||| |
|
|
| T |
23439176 |
tttt |
23439173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 147 - 348
Target Start/End: Original strand, 23437999 - 23438199
Alignment:
| Q |
147 |
attctttttctgaaccagttattgacaatggtctgcttaatcatacagacaacaatgttacaaacttgaacgtcaggttccgatttggtgctcctaccga |
246 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||| ||| ||||||||||||| |||| ||||||| ||||| ||||||| |||||||||||| | ||| |
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|
| T |
23437999 |
attcttttcctgaaccaattattgacaatggtttgcataa-catacagacaacagtgttgcaaactttaacgttaggttcccatttggtgctcccatcga |
23438097 |
T |
|
| Q |
247 |
cgaagtgaatgttgattcggaacaacaggccccaaataccgtttcatggggtcaaaatggcgacttagtaaggcagtcattgctcagtaacggggaaatt |
346 |
Q |
| |
|
||||||| |||||||| ||||||| | |||||||||||||||| |||||||||||||| |||||||| |||||| || | ||||| ||| ||||| || |
|
|
| T |
23438098 |
tgaagtgagtgttgatttcgaacaacggcccccaaataccgtttcctggggtcaaaatggtgacttagttaggcagccactactcagaaacagggaagtt |
23438197 |
T |
|
| Q |
347 |
ac |
348 |
Q |
| |
|
|| |
|
|
| T |
23438198 |
ac |
23438199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 8673522 - 8673711
Alignment:
| Q |
157 |
tgaaccagttattgacaatggtctgcttaatcatacagacaacaatgttacaaacttgaacgtcaggttccgatttggtgctcctaccgacgaagtgaat |
256 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||||||||| ||| ||||||| ||||| ||||||| |||||||||||| | ||| ||||||||| |
|
|
| T |
8673522 |
tgaaccagttattgacaatggtttgcataaacatacagacaacagtgtcgcaaactttaacgttaggttcccatttggtgctcccatcgatgaagtgaat |
8673621 |
T |
|
| Q |
257 |
gttgattcggaacaacaggccccaaataccgtttcatggggtcaaaatggcgacttagtaaggcagtcattgctcagtaacggggaaattacc |
349 |
Q |
| |
|
||||||| ||||||| | |||| ||||||||| |||||||||||||| |||||||| |||||| || | ||||| ||| ||||| ||||| |
|
|
| T |
8673622 |
gttgatttcgaacaacggccccc---taccgtttcctggggtcaaaatggtgacttagttaggcaggcactactcagaaacagggaagttacc |
8673711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 322
Target Start/End: Complemental strand, 8674742 - 8674569
Alignment:
| Q |
147 |
attctttttctgaaccagttattgacaatggtctgcttaatcatacagacaacaatgttacaaacttgaacgtcaggttccgatttggtgctcctaccga |
246 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||| |||||||| || |||| ||||||| || || ||||||| |||||||||||| | || |
|
|
| T |
8674742 |
attctttttctaaaccagttattgacaatggtttgcataaacatacagataa---tgttgcaaactttaatgttaggttcccatttggtgctcccattga |
8674646 |
T |
|
| Q |
247 |
cgaagtgaatgttgattcggaacaacagg-ccccaaataccgtttcatggggtcaaaatggcgacttagtaaggcag |
322 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
8674645 |
tgaagtgaatgttgatttcgaacaacggctccccaaataccgtttcctggggtcaaaatggtgacttagttaggcag |
8674569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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