View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12326_high_8 (Length: 370)

Name: NF12326_high_8
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12326_high_8
NF12326_high_8
[»] scaffold0014 (2 HSPs)
scaffold0014 (201-359)||(83014-83171)
scaffold0014 (135-176)||(82973-83014)
[»] chr7 (2 HSPs)
chr7 (21-93)||(31209876-31209948)
chr7 (21-86)||(31206445-31206510)
[»] chr4 (3 HSPs)
chr4 (21-93)||(6671192-6671264)
chr4 (21-85)||(895699-895763)
chr4 (21-84)||(6667529-6667592)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-84)||(26118-26181)
[»] chr2 (1 HSPs)
chr2 (21-84)||(1043603-1043666)
[»] chr5 (1 HSPs)
chr5 (22-76)||(31307214-31307268)
[»] chr6 (1 HSPs)
chr6 (135-176)||(34233954-34233995)
[»] chr8 (2 HSPs)
chr8 (21-50)||(1788743-1788772)
chr8 (37-93)||(21185110-21185166)


Alignment Details
Target: scaffold0014 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 201 - 359
Target Start/End: Original strand, 83014 - 83171
Alignment:
Q  201 taaattcggttgttgatatctcggagaatgagaggtggaatggcaaaatgtttatcatagctggaaattttcaataatggcgtggcgaactttcgtgtac 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||     
T  83014 taaattccgttgttgatatctcggagaatgagaggtggaatggcaaaatgtttatcaaagctgaaaattttcaatagt-gcgtggcgaactttcgtgtat 83112  T
Q  301 aaggaaatgacaaataagtctatgcaaattatattagacatacgtcgtcacacaggttc 359  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  83113 aaggaaatgacaaataagtctatgcaaattatattagatatacatcgtcacataggttc 83171  T

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Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 82973 - 83014
Alignment:
Q  135 gtactctaacttccagatcaatcaccacgattcgtaacaact 176  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  82973 gtactctaatttccagatcaatcaccacgattcgtaacaact 83014  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 31209948 - 31209876
Alignment:
Q  21 gatgcttctatttatatatgatgattattatttttagataattcttatgactaattatacaacaatcttgagg 93  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  31209948 gatgcttctatttatatatgatgattattatttgtagataactcttatgactaattctacaacaatcttgagg 31209876  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 31206510 - 31206445
Alignment:
Q  21 gatgcttctatttatatatgatgattattatttttagataattcttatgactaattatacaacaat 86  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  31206510 gatgcttctatttatatatgatgattattatttgtagataattcttatgactaattctacaacaat 31206445  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 6671264 - 6671192
Alignment:
Q  21 gatgcttctatttatatatgatgattattatttttagataattcttatgactaattatacaacaatcttgagg 93  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  6671264 gatgcttctatttatatatgatgattatgatttttggataattcttacgactaattatacaacaatcttgagg 6671192  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 895699 - 895763
Alignment:
Q  21 gatgcttctatttatatatgatgattattatttttagataattcttatgactaattatacaacaa 85  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  895699 gatgcttctaattatatatgatgattattatttgtagataattctcatgactaattatacaacaa 895763  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 6667592 - 6667529
Alignment:
Q  21 gatgcttctatttatatatgatgattattatttttagataattcttatgactaattatacaaca 84  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  6667592 gatgcttctatttatatttgatgattatgatttttggataattcttatgactaattatacaaca 6667529  T

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Target: scaffold0007 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 26181 - 26118
Alignment:
Q  21 gatgcttctatttatatatgatgattattatttttagataattcttatgactaattatacaaca 84  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  26181 gatgcttctatttatatatgatgattattatttgtagatgattcttatgattaattatacaaca 26118  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 1043603 - 1043666
Alignment:
Q  21 gatgcttctatttatatatgatgattattatttttagataattcttatgactaattatacaaca 84  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  1043603 gatgcttctatttatatatgatgattattttttgtagataattcttatgactaattttacaaca 1043666  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 31307268 - 31307214
Alignment:
Q  22 atgcttctatttatatatgatgattattatttttagataattcttatgactaatt 76  Q
    |||||| |||||||||||| ||||||||||||  ||||||||||||||| |||||    
T  31307268 atgcttatatttatatatgttgattattatttggagataattcttatgattaatt 31307214  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 34233954 - 34233995
Alignment:
Q  135 gtactctaacttccagatcaatcaccacgattcgtaacaact 176  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  34233954 gtactctaatttccggatcaatcaccacgattcgtaacaact 34233995  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 1788772 - 1788743
Alignment:
Q  21 gatgcttctatttatatatgatgattatta 50  Q
    ||||||||||||||||||||||||||||||    
T  1788772 gatgcttctatttatatatgatgattatta 1788743  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 21185166 - 21185110
Alignment:
Q  37 tatgatgattattatttttagataattcttatgactaattatacaacaatcttgagg 93  Q
    |||| ||||||||||||  ||| ||||| |||||||| || ||||||||||||||||    
T  21185166 tatgctgattattatttagagagaattcatatgactacttttacaacaatcttgagg 21185110  T

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