View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12326_low_1 (Length: 680)

Name: NF12326_low_1
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12326_low_1
NF12326_low_1
[»] chr8 (1 HSPs)
chr8 (15-670)||(9966406-9967061)


Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 15 - 670
Target Start/End: Original strand, 9966406 - 9967061
Alignment:
Q  15 ggttctgtcagtcaaatatgatttgcctggtgaaaagaattcattgattcatagctttttcaaactacaaatatactgagttagcttcagcagataagaa 114  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9966406 ggttttgtcagtcaattatgatttgcctggtgaaaagaattcattgattcatagctttttcaaactacaaatatactgagttagcttcagcagataagaa 9966505  T
Q  115 ggtatggaattgaaagacctaccgaaaacatccaaaaaagatagtggcatactgcagctataaaactgagttcacgaggcagagcaatttgtaatgaatc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9966506 ggtatggaattgaaagacctaccgaaaacatccaaaaaagatagtggcatactgcagctataaaactgagctcacgaggcagagcaatttgtaatgaatc 9966605  T
Q  215 cacaaatgatgaaataccacgatgcttcacgagaacttttgaggtagagttcttctatatccacaataattgctacaattcattagcaacaacaaagtac 314  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9966606 cacaaatgatgaaataccgcgatgcttcacgagaacttttgaggtagagttcttctatatccacaataattgctacaattcattagcaacaacaaagtac 9966705  T
Q  315 tgtgggttaagcagtagctgtacaatgtttactagaagagaaattcatggacctgggagaatcatttcctctaactacacggttatagataaccttaaac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9966706 tgtgggttaagcagtagctgtacaatgtttactagaagagaaattcatggacctgggagaatcatttcctctaacgacacggttatagataaccttaaac 9966805  T
Q  415 gactgagagccatgaggtcgagtaagcaaacttattggcattcttagtgtttgctttcggtttcttcttccccgaatcaaaatgctgaacgttttctcat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9966806 gactgagagccatgaggtcgagtaagcaaacttattggcattcttagtgtttgctttcggtttcttcttccccgaatcaaaatgctgaacgttttctcat 9966905  T
Q  515 catccatgttcatttcgctactgctggtgctaatgttggaaccaacaatttgatttggatcgttcccagcattgtcggtcccaggaaaatttggattgcc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9966906 catccatgttcatttcgctactgctggtgctaatgttggaaccgacaatttgatttggatcgttcccagcattgtcggtcccaggaaaatttggattgcc 9967005  T
Q  615 attttcttttatactttctgaaccaactctcaccgtttcatcttcactcatctctg 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9967006 attttcttttatactttctgaaccaactctcaccgtttcatcttcactcatctctg 9967061  T

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