View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12326_low_10 (Length: 371)
Name: NF12326_low_10
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 32026357 - 32026711
Alignment:
| Q |
13 |
ctgtgtgtttgacttcattttggttgttttctactgttaaatttgttgcctgtgatttatgttgagtgttgatgtcttcttctgtccgtgccaactaatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32026357 |
ctgtgtgtttgacttcattttggttgttttctactgttaaatttgttgcctgtgatttatgttgagtgttgatgtcttcttctgtccgtgccaactaatt |
32026456 |
T |
|
| Q |
113 |
cagtaattagtgattcaatgtttactgcattttgattgttctcttggtaacaagcaatgaggtagactatttagtagtagtagactagagattctagtta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32026457 |
cagtaattagtgattcaatgtttactgcattttgattgttctcttggtaacaagcaatgaggtagactatttagtagtagtagactagagattctagtta |
32026556 |
T |
|
| Q |
213 |
atggtatgaagcagcttgatcccaccaaccaaatagcttaactctacaacttgtaatttcttctcatcctatcccaaaagtccagtacgtaagcaagtca |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32026557 |
gtggtataaagcagcttgatcccaccaaccaaatagcttaactctacaacttgtaatttcttctcatcctatcccaaaagtccagtacgtaagcaagtca |
32026656 |
T |
|
| Q |
313 |
ttagaaggatttcctaaacctgctatttagtttgatgaaacacacaggttctgct |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
32026657 |
ttagaaggatttcctaaacctgctatttagtttgatgaaacacactgggtctgct |
32026711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 32024925 - 32025253
Alignment:
| Q |
13 |
ctgtgtgtttgacttcattttggttgttttctactgttaaatttgttgcctgtgatttatgttgagtgttgatgtcttcttctgtccgtgccaactaatt |
112 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || ||||||||| | | |||||||| ||||||| ||| | |||| |||| ||||| || |
|
|
| T |
32024925 |
ctgtgtgtttgacttcttttgggttgttttcta---tttaatttgttgatttgggtttatgtttgatgttgat---ttcctttgtctgtgctaactagtt |
32025018 |
T |
|
| Q |
113 |
cagtaattagtgattcaatgtttactgcattttgattgttctcttggtaacaagcaatgaggtagactatttagt-agtagtagactagagattctagtt |
211 |
Q |
| |
|
| ||||||||||||||| || | | | | ||||||||||||| |||||||||||| ||||| | | || ||||| | ||||||| ||||||||||| || |
|
|
| T |
32025019 |
cggtaattagtgattcagtggtaattac--tttgattgttctcgtggtaacaagcactgaggga-attagttagtaattagtagagtagagattctaatt |
32025115 |
T |
|
| Q |
212 |
aatggtatgaagcagcttgatcccaccaaccaaatagcttaactctacaacttgtaatttcttctcatcctatcccaaaagtccagtacgtaagcaagtc |
311 |
Q |
| |
|
||||| | |||| |||| |||||||| ||| |||||| |||| || |||| |||| |||||||| |||| | ||||||| || | |||| | || |
|
|
| T |
32025116 |
aatggaaggaagtagctagatcccactaactaaatagagctactcaactacttcgaattccttctcattctatagaagaagtccaataagcaagctaatc |
32025215 |
T |
|
| Q |
312 |
attagaaggatttcctaaacct-gctatttagtttgat |
348 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
32025216 |
attagaagagtttactaaacctagctatttagtttgat |
32025253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University