View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12326_low_14 (Length: 296)
Name: NF12326_low_14
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 9848072 - 9847806
Alignment:
| Q |
22 |
ccttttaattcttgttaattgtttagcaatatgaacttccctaacaatactacctatggaagatcaccaattcaaagaggacaccagctacaaggacctc |
121 |
Q |
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| T |
9848072 |
ccttttaattctcgttaattgtttagcaatatgaacttccctaacgatactacctatggaagatcaccaattcaaagaggacaccaactacaaggacctc |
9847973 |
T |
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| Q |
122 |
gtcctacgcctctaaggataaataaaaactctcataagatcaaaaaaccaccgttagccccgcaagctcaacctcgcctaccggttatcatttacatggt |
221 |
Q |
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| T |
9847972 |
gccctacacctctaaggataaacaaaaactctcataagataaaaaaaccaccgttagccccgcaagcccaacctcgcctaccggtcatcatttacatggt |
9847873 |
T |
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| Q |
222 |
ctccccaaagataatccacaccacaccaagtgaattcatgagcctagttcaacgtctcacaggttct |
288 |
Q |
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| T |
9847872 |
ctctccaaagataatccacaccacaccaagtgaattcatgagcctagttcaacgtctcaccggttct |
9847806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 288
Target Start/End: Complemental strand, 9856191 - 9855955
Alignment:
| Q |
52 |
atgaacttccctaacaatactacctatggaagatcaccaattcaaagaggacaccagctacaaggac---ctcgtcctacgcctctaaggataaataaaa |
148 |
Q |
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| T |
9856191 |
atgaacttccctaacaatatttccaatgaaagatcacaaa---aaagagaactccaactacaaggacttcctcgccctacacctctaaccataaacaaaa |
9856095 |
T |
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| Q |
149 |
actctcataagatcaaaaaaccaccgttagccccgcaagctcaacctcgcctaccggttatcatttacatggtctccccaaagataatccacaccacacc |
248 |
Q |
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| T |
9856094 |
actctcataagatcaagaaaccaccgttgggtccaaaaatccaaattcacgaaccggttatcatttatacagaatctccaaagataatccacacatcacc |
9855995 |
T |
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| Q |
249 |
aagtgaattcatgagcctagttcaacgtctcacaggttct |
288 |
Q |
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| T |
9855994 |
aagtgagttcatgagccttgttcaaagcctcaccggttct |
9855955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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