View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12326_low_2 (Length: 575)

Name: NF12326_low_2
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12326_low_2
NF12326_low_2
[»] scaffold0154 (1 HSPs)
scaffold0154 (9-264)||(27439-27694)
[»] chr4 (17 HSPs)
chr4 (9-264)||(55500729-55500984)
chr4 (212-280)||(20350380-20350448)
chr4 (256-315)||(17512188-17512247)
chr4 (227-315)||(23383317-23383405)
chr4 (17-109)||(43079403-43079489)
chr4 (217-298)||(31634762-31634843)
chr4 (212-283)||(43079199-43079270)
chr4 (253-315)||(33370854-33370916)
chr4 (268-322)||(54453559-54453613)
chr4 (256-297)||(232031-232072)
chr4 (227-288)||(53290189-53290250)
chr4 (254-316)||(33369915-33369977)
chr4 (256-298)||(33409419-33409461)
chr4 (274-315)||(39429937-39429978)
chr4 (220-308)||(21166321-21166409)
chr4 (220-308)||(31836406-31836494)
chr4 (213-293)||(34956313-34956393)
[»] chr2 (13 HSPs)
chr2 (9-264)||(16043431-16043685)
chr2 (213-283)||(9370997-9371067)
chr2 (216-315)||(36390964-36391063)
chr2 (217-298)||(16427230-16427311)
chr2 (212-316)||(7868079-7868183)
chr2 (230-315)||(42370906-42370991)
chr2 (230-297)||(4976461-4976528)
chr2 (230-297)||(4994368-4994435)
chr2 (216-297)||(14573286-14573367)
chr2 (256-292)||(19521371-19521407)
chr2 (249-297)||(36391647-36391695)
chr2 (220-264)||(38834445-38834489)
chr2 (220-264)||(38834582-38834626)
[»] chr3 (17 HSPs)
chr3 (9-232)||(40427074-40427296)
chr3 (212-316)||(44406897-44407001)
chr3 (212-316)||(47481179-47481283)
chr3 (212-297)||(45501232-45501317)
chr3 (212-292)||(50305406-50305486)
chr3 (207-284)||(11267619-11267696)
chr3 (216-316)||(35458853-35458953)
chr3 (216-295)||(8653662-8653741)
chr3 (216-291)||(8652841-8652916)
chr3 (219-298)||(46740510-46740589)
chr3 (274-316)||(43768032-43768074)
chr3 (253-315)||(45297556-45297618)
chr3 (251-293)||(52399005-52399047)
chr3 (220-297)||(3971848-3971925)
chr3 (220-297)||(3997953-3998030)
chr3 (216-292)||(43104473-43104550)
chr3 (201-261)||(44385156-44385216)
[»] chr1 (18 HSPs)
chr1 (418-558)||(27397877-27398017)
chr1 (212-316)||(29334220-29334324)
chr1 (327-393)||(27398061-27398127)
chr1 (246-316)||(43316363-43316433)
chr1 (256-316)||(40028764-40028824)
chr1 (217-298)||(45064710-45064791)
chr1 (216-316)||(50950151-50950251)
chr1 (206-295)||(27418190-27418280)
chr1 (230-297)||(31788232-31788299)
chr1 (207-264)||(50267620-50267677)
chr1 (230-316)||(34717497-34717583)
chr1 (270-315)||(30780980-30781025)
chr1 (201-261)||(4530835-4530895)
chr1 (251-295)||(4640555-4640599)
chr1 (212-292)||(13361633-13361713)
chr1 (267-315)||(30466189-30466237)
chr1 (275-315)||(34716431-34716471)
chr1 (255-315)||(38931321-38931381)
[»] chr7 (13 HSPs)
chr7 (212-316)||(30402791-30402895)
chr7 (212-298)||(30915758-30915844)
chr7 (212-316)||(5004875-5004979)
chr7 (217-298)||(29315254-29315335)
chr7 (213-293)||(40905724-40905804)
chr7 (246-298)||(41224133-41224185)
chr7 (219-293)||(12732276-12732350)
chr7 (206-292)||(20900465-20900551)
chr7 (216-261)||(24321487-24321532)
chr7 (207-251)||(12653828-12653872)
chr7 (256-316)||(12732822-12732882)
chr7 (207-251)||(37625746-37625790)
chr7 (201-261)||(37693486-37693546)
[»] scaffold1956 (1 HSPs)
scaffold1956 (137-264)||(1084-1210)
[»] chr5 (8 HSPs)
chr5 (212-316)||(18152676-18152779)
chr5 (217-298)||(16970976-16971057)
chr5 (217-292)||(6353714-6353789)
chr5 (254-316)||(32943523-32943585)
chr5 (212-284)||(8226680-8226752)
chr5 (274-316)||(1970514-1970556)
chr5 (216-290)||(33283197-33283271)
chr5 (276-320)||(4874586-4874630)
[»] chr8 (11 HSPs)
chr8 (217-288)||(41092746-41092817)
chr8 (216-292)||(30272898-30272974)
chr8 (216-292)||(36936639-36936715)
chr8 (249-297)||(40450961-40451009)
chr8 (227-292)||(36936371-36936436)
chr8 (212-293)||(1487606-1487687)
chr8 (207-284)||(10501846-10501922)
chr8 (274-315)||(42346105-42346146)
chr8 (230-315)||(43972042-43972127)
chr8 (274-316)||(42345400-42345442)
chr8 (207-251)||(45274940-45274984)
[»] scaffold2003 (2 HSPs)
scaffold2003 (212-297)||(469-554)
scaffold2003 (216-316)||(596-697)
[»] scaffold0041 (2 HSPs)
scaffold0041 (213-293)||(44214-44294)
scaffold0041 (207-297)||(27246-27336)
[»] scaffold0189 (1 HSPs)
scaffold0189 (230-297)||(12815-12882)
[»] chr6 (2 HSPs)
chr6 (216-315)||(29290130-29290229)
chr6 (220-297)||(33018192-33018269)
[»] scaffold0129 (1 HSPs)
scaffold0129 (259-297)||(43203-43241)
[»] scaffold0180 (2 HSPs)
scaffold0180 (219-292)||(22172-22245)
scaffold0180 (216-316)||(23033-23134)


Alignment Details
Target: scaffold0154 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 27694 - 27439
Alignment:
Q  9 agcagagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttttgcaaaatggtgattca 108  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27694 agcaaagaggaacaaatctaaacctcccacatccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttttgcaaaatgttgattca 27595  T
Q  109 agctataggaattgaattttgagaggttgctggtagtgatactagtgttgatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaa 208  Q
    |||| | ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27594 agctgttggaattgaattttgagaggttgctggtggtggtactagtgttgatgcatgaaggaagatacaaaggagagagaaattggtgaaagagtgttaa 27495  T
Q  209 aagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgg 264  Q
    |||||||||||||||||||||||||||||   | || | |||||||||||||||||    
T  27494 aagaatatagtgttgagagagtatgataatgttgtgattttcatttgatctaatgg 27439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 55500729 - 55500984
Alignment:
Q  9 agcagagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttttgcaaaatggtgattca 108  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55500729 agcaaagaagaacaaatctaaacctctcacacccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttttgcaaaatggtgattca 55500828  T
Q  109 agctataggaattgaattttgagaggttgctggtagtgatactagtgttgatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaa 208  Q
    |||| ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55500829 agctgtaggaattgaattttaagaggttgctggtggtggtactagtgttgatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaa 55500928  T
Q  209 aagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgg 264  Q
    ||||||||| |||||||||||||||||||   | || | |||||||||||||||||    
T  55500929 aagaatataatgttgagagagtatgataatgttgtgattttcatttgatctaatgg 55500984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 20350448 - 20350380
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcc 280  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  20350448 aatatagtgttgagagagtatgataaaagtatgatcttcatttgatttaatgggtaaaatttactttcc 20350380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 17512188 - 17512247
Alignment:
Q  256 atctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17512188 atctaatgactaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 17512247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 23383405 - 23383317
Alignment:
Q  227 gagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    ||||||||||| ||| || ||||||||||||| ||||| ||||||| ||||||||||| |||||||||||| ||| ||||||| |||||    
T  23383405 gagtatgataagagtgtgttcttcatttgatcgaatggataaaattaactttcccatggtgggaaacaactctcctttctcattctaaa 23383317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 43079489 - 43079403
Alignment:
Q  17 ggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttttgcaaaatggtgattcaa 109  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||| |      || |||||| |||||||||||||||||||||||    
T  43079489 ggaacaaatctaaacctcccacacttatgttgaaatgctagaaatagtgaatca------caaatattcttgttttgcaaaatggtgattcaa 43079403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 31634762 - 31634843
Alignment:
Q  217 agtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||||| ||||||||||| |||||  |||||||| |||||||||| ||||| ||||||| ||||||||| ||| |||||    
T  31634762 agtgttgagggagtatgataagagtatattcttcattagatctaatggttaaaacttacttttccatgatggaaaaaaacta 31634843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 43079270 - 43079199
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccat 283  Q
    |||||||||||||||| | ||||||| | |||| |||| | |||||||||||| ||||||| ||||||||||    
T  43079270 aatatagtgttgagagtgcatgataagactatgttctttacttgatctaatggataaaattaactttcccat 43079199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 33370854 - 33370916
Alignment:
Q  253 ttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||||| ||| ||| ||||||||||| |||||||||| ||||| ||| |||||||||    
T  33370854 ttgatctaatggctaacattaactttcccatggtgggaaacaagtatcctttcccatgctaaa 33370916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 54453559 - 54453613
Alignment:
Q  268 aaatttactttcccatgatgggaaacaactatccattctcatgctaaattccatc 322  Q
    ||||||||||||||||| |||||||||||||| ||||| ||| |||||| |||||    
T  54453559 aaatttactttcccatggtgggaaacaactattcattcccattctaaatgccatc 54453613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 232031 - 232072
Alignment:
Q  256 atctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  232031 atctaatggttaaaatttactttcccatggtgggaaacaact 232072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 53290189 - 53290250
Alignment:
Q  227 gagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgg 288  Q
    ||||||||||||||| |  ||||||||  ||||||||| ||||| |||||||||||||||||    
T  53290189 gagtatgataaaagtgtattcttcattgaatctaatggttaaaacttactttcccatgatgg 53290250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 33369977 - 33369915
Alignment:
Q  254 tgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    ||||||||||| ||| ||| ||||||||||| |||||||||| ||||  ||| ||||||||||    
T  33369977 tgatctaatggctaacattaactttcccatggtgggaaacaaatatcatttcccatgctaaat 33369915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 33409419 - 33409461
Alignment:
Q  256 atctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||    
T  33409419 atctaatggataaaatttactttcctatggtgggaaacaacta 33409461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 39429937 - 39429978
Alignment:
Q  274 actttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    ||||||||||| |||||||||||| ||||||| |||||||||    
T  39429937 actttcccatggtgggaaacaactctccattcccatgctaaa 39429978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 21166321 - 21166409
Alignment:
Q  220 gttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctca 308  Q
    |||||||||||||||||  | |||| || |||||| |||||||||  |  ||  ||||||||||||||||||| |||| ||| ||||||    
T  21166321 gttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatgggaaagaactctcctttctca 21166409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 31836406 - 31836494
Alignment:
Q  220 gttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctca 308  Q
    ||||||||||||||||| || |||| || |||||| |||||||||  |  ||  ||||||||||| ||||||| |||| ||| ||||||    
T  31836406 gttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttctca 31836494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 34956393 - 34956313
Alignment:
Q  213 atatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaac 293  Q
    |||||||||||||||  |||||||||| | || |||| | ||||||||| ||  |||||| ||||||| || |||||||||    
T  34956393 atatagtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaattaactttcctataatgggaaac 34956313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 16043685 - 16043431
Alignment:
Q  9 agcagagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttttgcaaaatggtgattca 108  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16043685 agcaaagaggaacaaatctaaacctctcacacccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttt-gcaaaatggtgattca 16043587  T
Q  109 agctataggaattgaattttgagaggttgctggtagtgatactagtgttgatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaa 208  Q
    |||| | ||||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16043586 agctgttggaattggattttgagaggttgctcgtggtggtactagtgttgatgcgtgaaggaagatgcaaaggagagagaaattggtgaaagagtgttaa 16043487  T
Q  209 aagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgg 264  Q
    |||||||||||||||||||||||||||||   | || | |||||||||||||||||    
T  16043486 aagaatatagtgttgagagagtatgataatgttttgattttcatttgatctaatgg 16043431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 9371067 - 9370997
Alignment:
Q  213 atatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccat 283  Q
    ||||||||||||||| |||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||    
T  9371067 atatagtgttgagagtgtatgataaaagtatgttcttcatttaatctaatggctgaaatttactttcccat 9370997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 36391063 - 36390964
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    ||||||||||||| || ||| ||| | || || |||||||||||||||| ||||||||||||||||||| ||||||||||||  || ||| |||||||||    
T  36391063 tagtgttgagagaataggattaaaatgtgttcctcatttgatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaa 36390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 16427230 - 16427311
Alignment:
Q  217 agtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||||| ||||||||||| |||||  |||||||| |||||||||| ||||| ||||||||||||||||| ||| |||||    
T  16427230 agtgttgagggagtatgataagagtatattcttcattagatctaatggttaaaacttactttcccatgatggaaaaaaacta 16427311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 7868079 - 7868183
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgc 311  Q
    ||||||||| | || || |||||||||  | || |||| |||||||||| ||| ||||||||||||||||||| ||||||||||||  || |||||||||    
T  7868079 aatatagtgctaagggactatgataaatatgtgctctttatttgatctagtggttaaaatttactttcccatggtgggaaacaactcccctttctcatgc 7868178  T
Q  312 taaat 316  Q
    |||||    
T  7868179 taaat 7868183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 42370906 - 42370991
Alignment:
Q  230 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||| |||  ||| || || |||||||||  || ||||||||||||||| |||||||||||| ||||||| ||| |||||    
T  42370906 tatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattcccatactaaa 42370991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 4976461 - 4976528
Alignment:
Q  230 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||| |||||||||| |||  |||| ||||||||| ||||||| ||||||||||  ||||||||||||    
T  4976461 tatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaact 4976528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 4994368 - 4994435
Alignment:
Q  230 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||| |||||||||| |||  |||| ||||||||| ||||||| ||||||||||  ||||||||||||    
T  4994368 tatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaact 4994435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 14573367 - 14573286
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||||||||||||||||||||||| |||  || |||||| |||||||||  |  ||  ||||||||||| ||||||| ||||    
T  14573367 tagtgttgagagagtatgataaaaatatattcctcatttaatctaatggacatgatcaactttcccatggtgggaaaaaact 14573286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 19521407 - 19521371
Alignment:
Q  256 atctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  19521407 atctaatggttaagatttactttcccatgatgggaaa 19521371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 36391647 - 36391695
Alignment:
Q  249 tcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||||| || |||||| ||||||||||||||||||| ||| ||||||||    
T  36391647 tcatttaatttaatggttaaaatttactttcccatggtggaaaacaact 36391695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 38834489 - 38834445
Alignment:
Q  220 gttgagagagtatgataaaagtatggtcttcatttgatctaatgg 264  Q
    |||||||||||||||||||| |||| || |||||| |||||||||    
T  38834489 gttgagagagtatgataaaaatatgttcctcatttaatctaatgg 38834445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 38834582 - 38834626
Alignment:
Q  220 gttgagagagtatgataaaagtatggtcttcatttgatctaatgg 264  Q
    ||||||||||||||||| || |||| ||||||||| |||||||||    
T  38834582 gttgagagagtatgatagaaatatgttcttcatttaatctaatgg 38834626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 3e-99; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 40427074 - 40427296
Alignment:
Q  9 agcagagaggaacaaatctaaacctcccacacccatgttgaaatgctagaaatggtgaataagatattcatatattcatgttttgcaaaatggtgattca 108  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  40427074 agcaaagaggaacaaatctaaacctcccacacccacgttgaaatgctagaaacggtaaataagatattcatatattcatgttttgcaaaatggtgattca 40427173  T
Q  109 agctataggaattgaattttgagaggttgctggtagtgatactagtgttgatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaa 208  Q
    |||| | ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40427174 agctcttggaattgaattttgagaggttgctggtggtggtactagtg-tgatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaa 40427272  T
Q  209 aagaatatagtgttgagagagtat 232  Q
    ||||||||||||||||||||||||    
T  40427273 aagaatatagtgttgagagagtat 40427296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 44406897 - 44407001
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgc 311  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  44406897 aatatagtgttgaaagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggtgggaaacaactatctattcccatgc 44406996  T
Q  312 taaat 316  Q
    |||||    
T  44406997 taaat 44407001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 47481179 - 47481283
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgc 311  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||||||||||||||    
T  47481179 aatatagtgttgagagaatatgataaaagtatggtctttatttgatctaatggataaaatttacttttctatggtagaaaacaactatccattctcatgc 47481278  T
Q  312 taaat 316  Q
    |||||    
T  47481279 taaat 47481283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 45501232 - 45501317
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    ||||||||||| |||||||| ||| ||| | || ||||||||||||| ||||| | ||||||||||||||||| ||| ||||||||    
T  45501232 aatatagtgtttagagagtaggattaaaatgtgttcttcatttgatccaatggtttaaatttactttcccatggtggaaaacaact 45501317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 50305406 - 50305486
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    ||||||||||| |  ||||||||||| |||||| ||||||||  ||||||||| ||||||||||||| ||||| |||||||    
T  50305406 aatatagtgttcatggagtatgataagagtatgctcttcattcaatctaatggttaaaatttacttttccatggtgggaaa 50305486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 11267619 - 11267696
Alignment:
Q  207 aaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatg 284  Q
    |||| ||||||||| |||  ||||||||||| |||||| |||| |||| ||||||||| ||||||||| |||||||||    
T  11267619 aaaataatatagtggtgatggagtatgataagagtatgctctttatttaatctaatggttaaaatttattttcccatg 11267696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 35458953 - 35458853
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||  ||||||||||| |   || |||| |||| ||| ||||| | ||||||||||||| ||| |||||||||||||||||||| ||| |||||    
T  35458953 tagtgttgaaggagtatgataagaaagtgttctttatttaatcaaatggattaaatttactttcctatggtgggaaacaactatccattcccattctaaa 35458854  T
Q  316 t 316  Q
    |    
T  35458853 t 35458853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 8653662 - 8653741
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaa 295  Q
    |||||||||| || |||||||| ||| || |  |||||||||| ||||| |||||||||||||| |||| ||||||||||    
T  8653662 tagtgttgagggaatatgataagagtgtgtttctcatttgatcaaatggttaaaatttactttctcatggtgggaaacaa 8653741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 8652916 - 8652841
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaa 291  Q
    |||||||||||||||| ||| ||| | || || |||||| ||| |||||  |||||||||||||||||| ||||||    
T  8652916 tagtgttgagagagtaggattaaaatgtgttcctcatttaatcaaatggtgaaaatttactttcccatggtgggaa 8652841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 46740510 - 46740589
Alignment:
Q  219 tgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||| ||||||||||| ||| || | ||||||| ||| ||||  ||||| ||||||||||||| ||||||| |||||    
T  46740510 tgttgagggagtatgataagagtgtgtttttcatttaatccaatgattaaaacttactttcccatggtgggaaaaaacta 46740589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 43768074 - 43768032
Alignment:
Q  274 actttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||    
T  43768074 actttcccatggtgggaaacaactctccattcccatgctaaat 43768032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 45297618 - 45297556
Alignment:
Q  253 ttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||||| |||||   |||||||||||||||||||||||| ||| ||| ||| |||||    
T  45297618 ttgatctaatggttaaaaaaaactttcccatgatgggaaacaactctcctttcccatactaaa 45297556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 52399005 - 52399047
Alignment:
Q  251 atttgatctaatgggtaaaatttactttcccatgatgggaaac 293  Q
    |||| |||||||||  |||||||||||||||||||||||||||    
T  52399005 atttaatctaatggtcaaaatttactttcccatgatgggaaac 52399047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 3971848 - 3971925
Alignment:
Q  220 gttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    ||||||||||||||||| || |||| || |||||| ||||||||| ||  ||  |||||||||| |||||||| ||||    
T  3971848 gttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgatcaactttcccatcatgggaaagaact 3971925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 3998030 - 3997953
Alignment:
Q  220 gttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    ||||||||||||||||| || |||| || |||||| ||||||||| ||  ||  |||||||||| |||||||| ||||    
T  3998030 gttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgatcaactttcccatcatgggaaagaact 3997953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 43104473 - 43104550
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaa-atttactttcccatgatgggaaa 292  Q
    |||||| ||||||||||||||||| |||  | || |||||||||||||| |||| |   |||||||||||||||||||    
T  43104473 tagtgtggagagagtatgataaaattattttattgatttgatctaatggttaaataccaactttcccatgatgggaaa 43104550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 44385156 - 44385216
Alignment:
Q  201 agtgttaaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaa 261  Q
    ||||| |||| ||| ||||| ||||||  ||| |||||| |||||||||||||||||||||    
T  44385156 agtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaa 44385216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 418 - 558
Target Start/End: Complemental strand, 27398017 - 27397877
Alignment:
Q  418 gttaactctatgttttcaggggaagggaacgttaataatccaatatttcattagaaggtaaataaaactggttaaaaaagtttcatcgcatgaatcgaac 517  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  27398017 gttaactctatgttttaaggggaagggaacgttaataatccaatgtttcattagaaggtaaataaaactggttaaaaaagtttcatcctatgaatcgaac 27397918  T
Q  518 tcatattctattgaataatttgtgatttgatagaggtcatt 558  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  27397917 ttatattctattgaataatttgtgatttgatagaggtcatt 27397877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 29334324 - 29334220
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgc 311  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  29334324 aatatagtgctgagagaatatgataaaagtatggtctttatttgatctaatgggtaaaatttactttcccatggtgggaaacaactatccattcccatgc 29334225  T
Q  312 taaat 316  Q
    |||||    
T  29334224 taaat 29334220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 27398127 - 27398061
Alignment:
Q  327 aatatacggtggaaattgtctcgtaagatgagagaagtaaatttcaaattgtttgcttcaatgcaca 393  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27398127 aatatacggtggaaattgtctcgtaagacgagagaagtaaatttcaaattgtttgcttcaatgcaca 27398061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 43316433 - 43316363
Alignment:
Q  246 tcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    |||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  43316433 tctttatttgatcaaatggataaaatttactttcccatggtgggaaacaactatccattcccatgctaaat 43316363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 40028764 - 40028824
Alignment:
Q  256 atctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  40028764 atctaatggataaaatttactttcctatggtgggaaacaactatccattctcatgctaaat 40028824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 45064791 - 45064710
Alignment:
Q  217 agtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||||| ||||||||||| |||||  |||| ||| |||||||||| ||||| ||||||||||||||||||||| |||||    
T  45064791 agtgttgagggagtatgataagagtatattcttaattagatctaatggttaaaacttactttcccatgatgggaaaaaacta 45064710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 50950251 - 50950151
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||  |||||||||||||   || |||| |||| | | ||||| ||||||||||||| ||||| |||||||||||||||||||  |||||||||    
T  50950251 tagtgttgaaggagtatgataaaaaagtgttctttatttaaccaaatggataaaatttacttttccatggtgggaaacaactatccatttccatgctaaa 50950152  T
Q  316 t 316  Q
    |    
T  50950151 t 50950151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 27418280 - 27418190
Alignment:
Q  206 taaaagaatatagtgtt-gagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaa 295  Q
    ||||| ||||||||||| |||||||||| | || ||| || ||||||||||||||||||| ||||| |||||||  |||| ||||||||||    
T  27418280 taaaataatatagtgttcgagagagtataacaagagtgtgctcttcatttgatctaatggttaaaaattactttttcatggtgggaaacaa 27418190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 31788232 - 31788299
Alignment:
Q  230 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||| |||||||||| |||  |||| ||||||||| ||||||| ||||||||||| ||||||||||||    
T  31788232 tatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaact 31788299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 50267677 - 50267620
Alignment:
Q  207 aaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgg 264  Q
    |||| |||||||||| |||||| |||||||| | ||| ||||||||||||||||||||    
T  50267677 aaaataatatagtgtggagagaatatgataagaatatagtcttcatttgatctaatgg 50267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 34717497 - 34717583
Alignment:
Q  230 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    |||||||||| |||| |||| | |||||||||||| | |||| |||||||||||  || ||||||||| |||| || |||| |||||    
T  34717497 tatgataaaaatatgttctttagttgatctaatggttcaaatctactttcccatagtgagaaacaactctccactcccatgataaat 34717583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 30780980 - 30781025
Alignment:
Q  270 atttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||||||||||||||||||||| ||| ||| |||| ||||    
T  30780980 atttactttcccatgatgggaaacaactctcctttcccatgttaaa 30781025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 4530835 - 4530895
Alignment:
Q  201 agtgttaaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaa 261  Q
    ||||| |||| ||| ||||| ||||||  ||| |||||| |||||||||||||||||||||    
T  4530835 agtgtgaaaaaaatctagtggtgagagtctataataaaaatatggtcttcatttgatctaa 4530895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 4640599 - 4640555
Alignment:
Q  251 atttgatctaatgggtaaaatttactttcccatgatgggaaacaa 295  Q
    |||||||||||||| | ||| ||||||||||||| ||||||||||    
T  4640599 atttgatctaatggttgaaaattactttcccatggtgggaaacaa 4640555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 13361713 - 13361633
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    |||||||||||||||||  |||||||| || || |||| | |||||||  ||| | ||||| ||||||||||| |||||||    
T  13361713 aatatagtgttgagagaccatgataaatgtgtgttctttacttgatctggtggttcaaattaactttcccatggtgggaaa 13361633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 30466237 - 30466189
Alignment:
Q  267 aaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    ||||| |||||||||||| ||||||||||||  |||||| |||||||||    
T  30466237 aaaatctactttcccatggtgggaaacaactccccattcccatgctaaa 30466189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 34716471 - 34716431
Alignment:
Q  275 ctttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||| |||||||||||||||||| ||||||| |||||||||    
T  34716471 cttttccatgatgggaaacaactctccattcccatgctaaa 34716431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 38931381 - 38931321
Alignment:
Q  255 gatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||| | ||||| ||||||||||| |||||||||| |  || |||||||||||||    
T  38931381 gatctaatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaa 38931321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 30402791 - 30402895
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  30402791 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggtggaaaataactatccattctcatgc 30402890  T
Q  312 taaat 316  Q
    |||||    
T  30402891 taaat 30402895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 30915844 - 30915758
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30915844 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggtgggaaacaacta 30915758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 5004875 - 5004979
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgc 311  Q
    |||||||||||||||||| ||| |||| | ||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||  ||||    
T  5004875 aatatagtgttgagagagcatgttaaaggaatgttcttcatttgatctaataggtaaaatttactttcccttggtgggaaacaactatccattcctatgc 5004974  T
Q  312 taaat 316  Q
    |||||    
T  5004975 taaat 5004979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 29315254 - 29315335
Alignment:
Q  217 agtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||||| ||||||||||| ||| |  |||||||| |||||||||| ||||| ||||||||||||||||||||| |||||    
T  29315254 agtgttgagggagtatgataagagtgtattcttcattagatctaatggttaaaacttactttcccatgatgggaaaaaacta 29315335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 40905724 - 40905804
Alignment:
Q  213 atatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaac 293  Q
    |||||||||||||||  |||||||||| | || |||| ||||||||||| ||  |||||| ||||||| || |||||||||    
T  40905724 atatagtgttgagagtctatgataaaaatgtgttctttatttgatctaagggtcaaaattaactttcctataatgggaaac 40905804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 41224185 - 41224133
Alignment:
Q  246 tcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    |||||||| |||||||||| ||||| ||||||||||||||||| ||| |||||    
T  41224185 tcttcattagatctaatggttaaaacttactttcccatgatggaaaaaaacta 41224133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 12732350 - 12732276
Alignment:
Q  219 tgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaac 293  Q
    |||||||||  |||||||||| |||| |||| |  |||||||||||  || ||||||||||||||| ||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaac 12732276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 20900551 - 20900465
Alignment:
Q  206 taaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    ||||| ||| |||||| |||||||||| |||||| | || |||| ||||||||||| ||  || ||  |||||||||||||||||||    
T  20900551 taaaaaaatttagtgtggagagagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcccatgatgggaaa 20900465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 24321532 - 24321487
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaa 261  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||    
T  24321532 tagtgatgagagagtatgataaaaatatgttcctcatttgatctaa 24321487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 12653872 - 12653828
Alignment:
Q  207 aaaagaatatagtgttgagagagtatgataaaagtatggtcttca 251  Q
    |||||||| |||||||||||||||||||||| |  ||||||||||    
T  12653872 aaaagaatgtagtgttgagagagtatgataataccatggtcttca 12653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 12732822 - 12732882
Alignment:
Q  256 atctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    ||||||||| |||||||||||||| |||| |||||||| | | ||||||  ||||||||||    
T  12732822 atctaatggataaaatttactttctcatggtgggaaactattgtccatttccatgctaaat 12732882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 37625790 - 37625746
Alignment:
Q  207 aaaagaatatagtgttgagagagtatgataaaagtatggtcttca 251  Q
    |||||||| |||||||||||||||||||||| |  ||||||||||    
T  37625790 aaaagaatgtagtgttgagagagtatgataataccatggtcttca 37625746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 37693486 - 37693546
Alignment:
Q  201 agtgttaaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaa 261  Q
    ||||| |||| ||| ||||| ||||||  ||| |||||| |||||||||||||||||||||    
T  37693486 agtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaa 37693546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 1210 - 1084
Alignment:
Q  137 gctggtagtgatactagtgttgatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaaaagaatatagtgttgagagagtatgata 236  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1210 gctggtggtggtactagtgt-gatgcgtgaaggaagatacaaaggagagagaaattggtgaaagagtgttaaaagaatatagtgttgagagagtatgata 1112  T
Q  237 aaagtatggtcttcatttgatctaatgg 264  Q
    |   | || | |||||||||||||||||    
T  1111 atgttgtgattttcatttgatctaatgg 1084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 18152779 - 18152676
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgc 311  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||| | |||    
T  18152779 aatatagtgtt-agagagaatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttctcatagtgggaaacaactatccattcccgtgc 18152681  T
Q  312 taaat 316  Q
    |||||    
T  18152680 taaat 18152676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 16970976 - 16971057
Alignment:
Q  217 agtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaacta 298  Q
    ||||||||| ||||||||||| ||| |  |||||||| |||||||||| ||||| ||||||||||||||||||||| |||||    
T  16970976 agtgttgagggagtatgataagagtgtattcttcattagatctaatggttaaaacttactttcccatgatgggaaaaaacta 16971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 6353789 - 6353714
Alignment:
Q  217 agtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    |||| |||| ||||||||||||||| || | ||||||| ||||||||| ||||||||||||||| |||||||||||    
T  6353789 agtgctgagggagtatgataaaagtgtgtttttcatttcatctaatggttaaaatttactttcctatgatgggaaa 6353714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 32943585 - 32943523
Alignment:
Q  254 tgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    ||||||||||| ||| ||| ||||||||||| |||||||||| ||||| ||| ||||||||||    
T  32943585 tgatctaatggctaacattaactttcccatggtgggaaacaaatatcctttcccatgctaaat 32943523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 8226752 - 8226680
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatg 284  Q
    |||||||| ||||| ||| ||||||| |||||| ||| ||||| |||||| || ||||||||||||| |||||    
T  8226752 aatatagtattgagggagcatgataagagtatgttctccatttaatctaaaggttaaaatttacttttccatg 8226680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 1970514 - 1970556
Alignment:
Q  274 actttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||    
T  1970514 actttcccatggtgggaaacaactctccattcccatgctaaat 1970556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 33283271 - 33283197
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatggga 290  Q
    ||||| |||||||||||||||||| | || || ||||||||||||||||  ||||    ||||||||||||||||    
T  33283271 tagtgatgagagagtatgataaaaatgtgttcctcatttgatctaatggtcaaaaaaacctttcccatgatggga 33283197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 4874630 - 4874586
Alignment:
Q  276 tttcccatgatgggaaacaactatccattctcatgctaaattcca 320  Q
    |||||||| ||||||||||| | ||||||| ||||||||||||||    
T  4874630 tttcccatcatgggaaacaattttccattcccatgctaaattcca 4874586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 41092746 - 41092817
Alignment:
Q  217 agtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgg 288  Q
    ||||||||| ||||||||||||||| |  |||||||| |||||||||| ||||| |||||||||||||||||    
T  41092746 agtgttgagggagtatgataaaagtgtattcttcattagatctaatggttaaaacttactttcccatgatgg 41092817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 30272898 - 30272974
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    |||| ||||| ||||||||||||||| |  ||||||||  ||||||||| ||||| |||||||||||||||||||||    
T  30272898 tagtattgagggagtatgataaaagtgtattcttcattgaatctaatggttaaaacttactttcccatgatgggaaa 30272974  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 36936639 - 36936715
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    |||| ||||| ||||||||||||||| |  |||| |||  ||||||||| |||||||||||||||||||||||||||    
T  36936639 tagtattgagggagtatgataaaagtgtattctttattgaatctaatggttaaaatttactttcccatgatgggaaa 36936715  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 40450961 - 40451009
Alignment:
Q  249 tcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  40450961 tcatttgatctaatggttaaaatttactttcccatggtgggaaacaact 40451009  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 36936371 - 36936436
Alignment:
Q  227 gagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    ||||||||||||||| |  |||| |||  ||||||||| |||||||||||||||||||||||||||    
T  36936371 gagtatgataaaagtgtattctttattgaatctaatggttaaaatttactttcccatgatgggaaa 36936436  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 1487687 - 1487606
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaac 293  Q
    |||||||||||||||| ||||||||| ||||||  ||| |||| || |||||| ||||||  ||||||| ||||| ||||||    
T  1487687 aatatagtgttgagagtgtatgataatagtatgtacttgatttaatttaatggttaaaatcaactttcctatgataggaaac 1487606  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 10501846 - 10501922
Alignment:
Q  207 aaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatg 284  Q
    |||| ||| |||||||||| ||||||||||| || ||| ||||||||||||| |||||  |||| |||||||||||||    
T  10501846 aaaataatctagtgttgag-gagtatgataagagcatgttcttcatttgatccaatggtcaaaaattactttcccatg 10501922  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 42346105 - 42346146
Alignment:
Q  274 actttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  42346105 actttcccatgatgggaaacaactctccattcccatgctaaa 42346146  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 43972042 - 43972127
Alignment:
Q  230 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||| |||||||||| |||  |||| ||||||||| ||||||| ||||||||||  ||||||||||||   ||||||||| |||||    
T  43972042 tatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcattctcatactaaa 43972127  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 42345442 - 42345400
Alignment:
Q  274 actttcccatgatgggaaacaactatccattctcatgctaaat 316  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||    
T  42345442 actttcccatggtgggaaacaactctccattcccatgctaaat 42345400  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 45274940 - 45274984
Alignment:
Q  207 aaaagaatatagtgttgagagagtatgataaaagtatggtcttca 251  Q
    |||||||| |||||||||||||||||||||| |  ||||||||||    
T  45274940 aaaagaatgtagtgttgagagagtatgataataccatggtcttca 45274984  T

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Target: scaffold2003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 469 - 554
Alignment:
Q  212 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||||| || |||| || |||||||||||| || |||| |||||||||| ||| ||||||||||||| ||||| ||||||||||||    
T  469 aatataatgctgagggactatgataaaagtgtgctctttatttgatctagtggttaaaatttacttttccatggtgggaaacaact 554  T

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Target: scaffold2003; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 697 - 596
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatggg-aaacaactatccattctcatgctaa 314  Q
    |||||||||  ||||||||||| ||| |  |||| |||| ||||||||| ||| ||| |||||||||  ||||| |||||||| | ||||| ||||||||    
T  697 tagtgttgaaggagtatgataagagtgtattctttatttaatctaatggctaacattaactttcccacaatgggaaaacaactcttcattcccatgctaa 598  T
Q  315 at 316  Q
    ||    
T  597 at 596  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 44294 - 44214
Alignment:
Q  213 atatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaac 293  Q
    |||||||||||||||  |||||||||| | || |||| ||||||||||| ||  |||||| ||||||| || |||||||||    
T  44294 atatagtgttgagagtctatgataaaaatgtgttctttatttgatctaagggtcaaaattaactttcctataatgggaaac 44214  T

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Target: scaffold0041; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 27336 - 27246
Alignment:
Q  207 aaaagaatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||| ||| |||||||||||||||||||||| | | || || |||||| |||||||||  |  ||  ||||||||||||||||||| ||||    
T  27336 aaaataatttagtgttgagagagtatgataagaatgtgttcctcatttaatctaatggacatgatcaactttcccatgatgggaaagaact 27246  T

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Target: scaffold0189 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 12815 - 12882
Alignment:
Q  230 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    ||||||||||||||| |||  | || |||||||||  |||||| ||||||||||| ||||||||||||    
T  12815 tatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaact 12882  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 29290229 - 29290130
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaactatccattctcatgctaaa 315  Q
    |||||||||  ||||||||||| ||| |  |||| |||| |||  |||| ||| ||| ||||||||||| |||||||||||| ||||||  |||||||||    
T  29290229 tagtgttgaaggagtatgataagagtgtattctttatttaatcccatggttaacattaactttcccatggtgggaaacaactctccatttccatgctaaa 29290130  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 33018269 - 33018192
Alignment:
Q  220 gttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||||||||||||||||||| |||| || |||||| |||||||||  |  ||  ||||||| ||||||||||| ||||    
T  33018269 gttgagagagtatgataaaaatatgttcctcatttaatctaatggacatgatcaactttccaatgatgggaaagaact 33018192  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 43203 - 43241
Alignment:
Q  259 taatgggtaaaatttactttcccatgatgggaaacaact 297  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  43203 taatggttaagatttactttcccatgatgggaaacaact 43241  T

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Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 22245 - 22172
Alignment:
Q  219 tgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatgatgggaaa 292  Q
    ||||||| ||||||||||| ||| || | ||||||| ||| ||||  ||||| ||||||||||||| |||||||    
T  22245 tgttgagggagtatgataagagtgtgtttttcatttaatccaatgattaaaacttactttcccatggtgggaaa 22172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 23033 - 23134
Alignment:
Q  216 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggt-aaaatttactttcccatgatgggaaacaactatccattctcatgctaa 314  Q
    |||||||||||||  ||||||||| |||| ||   |||| ||||||||| | |||| | ||||||||||||||||||| |||||  ||||| || |||||    
T  23033 tagtgttgagagaccatgataaaattatgttccctatttaatctaatggttcaaaactaactttcccatgatgggaaaaaactagacattcccaggctaa 23132  T
Q  315 at 316  Q
    ||    
T  23133 at 23134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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