View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12326_low_20 (Length: 220)
Name: NF12326_low_20
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 27105705 - 27105602
Alignment:
| Q |
1 |
accttttctgaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105705 |
accttttctgaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaa |
27105606 |
T |
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| Q |
101 |
agtg |
104 |
Q |
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|||| |
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| T |
27105605 |
agtg |
27105602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 27098706 - 27098603
Alignment:
| Q |
1 |
accttttctgaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||| | || ||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
27098706 |
accttttctgaatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaa |
27098607 |
T |
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| Q |
101 |
agtg |
104 |
Q |
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|||| |
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| T |
27098606 |
agtg |
27098603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 27086002 - 27085940
Alignment:
| Q |
39 |
aatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaa |
101 |
Q |
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||||||||||||| || |||||||||||| ||| || |||||||||||||||||||| |||| |
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| T |
27086002 |
aatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaa |
27085940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 27062882 - 27062811
Alignment:
| Q |
30 |
ttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaa |
101 |
Q |
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|||| ||| ||||||||||||| || ||||| |||| | |||||| |||||||||||||||||||| |||| |
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| T |
27062882 |
ttattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaa |
27062811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 27041524 - 27041467
Alignment:
| Q |
39 |
aatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaa |
96 |
Q |
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||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| |
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| T |
27041524 |
aatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaa |
27041467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 27069962 - 27069889
Alignment:
| Q |
23 |
actacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaa |
96 |
Q |
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|||||| |||| ||| |||||| |||||| || ||||| |||| | |||||| |||||||||||||||||||| |
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| T |
27069962 |
actacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaa |
27069889 |
T |
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