View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12326_low_21 (Length: 219)
Name: NF12326_low_21
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 27105681 - 27105795
Alignment:
| Q |
1 |
agtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctct |
100 |
Q |
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| T |
27105681 |
agtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctct |
27105780 |
T |
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| Q |
101 |
ctttcccacacaggt |
115 |
Q |
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| T |
27105781 |
ctttcccacacaggt |
27105795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 27098682 - 27098796
Alignment:
| Q |
1 |
agtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctct |
100 |
Q |
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| T |
27098682 |
agtgttgtgttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgttcagttattgatccaataagtctctct |
27098781 |
T |
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| Q |
101 |
ctttcccacacaggt |
115 |
Q |
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| T |
27098782 |
ctttcccacacaggt |
27098796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 27062896 - 27063002
Alignment:
| Q |
10 |
ttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccac |
109 |
Q |
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|||||||| ||| |||||||||||||||||||| ||| ||| |||| || ||||||||||||| ||||||||| ||||| | | |||||||||||| |
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| T |
27062896 |
ttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgtggaaatggttgtgtagttattgttccaacttggttttctctttcccac |
27062995 |
T |
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| Q |
110 |
acaggtt |
116 |
Q |
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| T |
27062996 |
acaggtt |
27063002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 27069969 - 27070075
Alignment:
| Q |
10 |
ttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccac |
109 |
Q |
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|||||||| ||| ||||||||||||||||||| ||| ||| || | || |||||| |||||| ||| ||||||||||| || | |||||||||||| |
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| T |
27069969 |
ttgattcacaaagggtgaaaatgcaacagattttctgtccatgggacattgtggaaaaggttgtatagctattgatccaacttgtgtttctctttcccac |
27070068 |
T |
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| Q |
110 |
acaggtt |
116 |
Q |
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||||||| |
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| T |
27070069 |
acaggtt |
27070075 |
T |
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