View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12326_low_4 (Length: 542)

Name: NF12326_low_4
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12326_low_4
NF12326_low_4
[»] chr8 (4 HSPs)
chr8 (340-542)||(5662761-5662964)
chr8 (244-323)||(35349204-35349283)
chr8 (86-123)||(44663700-44663737)
chr8 (86-185)||(35348991-35349089)
[»] chr7 (3 HSPs)
chr7 (381-542)||(11649358-11649515)
chr7 (83-123)||(16262699-16262739)
chr7 (86-123)||(21820191-21820228)
[»] chr3 (9 HSPs)
chr3 (403-542)||(52131068-52131206)
chr3 (83-162)||(19766011-19766088)
chr3 (340-425)||(31688059-31688144)
chr3 (86-123)||(46233980-46234017)
chr3 (83-123)||(11394015-11394055)
chr3 (340-425)||(31896723-31896808)
chr3 (340-425)||(31912432-31912517)
chr3 (381-425)||(31946080-31946124)
chr3 (87-123)||(52130790-52130826)
[»] chr2 (7 HSPs)
chr2 (20-87)||(36887107-36887175)
chr2 (83-162)||(997817-997895)
chr2 (87-139)||(3625182-3625234)
chr2 (85-185)||(4453777-4453875)
chr2 (85-123)||(9208569-9208607)
chr2 (83-123)||(7161813-7161853)
chr2 (27-74)||(36893672-36893719)
[»] scaffold0003 (4 HSPs)
scaffold0003 (340-458)||(36755-36873)
scaffold0003 (372-452)||(42943-43024)
scaffold0003 (86-123)||(37025-37062)
scaffold0003 (83-120)||(43200-43237)
[»] chr1 (8 HSPs)
chr1 (86-193)||(1721556-1721664)
chr1 (86-208)||(7608320-7608440)
chr1 (86-187)||(31771329-31771428)
chr1 (85-123)||(32440666-32440704)
chr1 (150-269)||(7608195-7608309)
chr1 (85-123)||(22368216-22368254)
chr1 (150-269)||(31771183-31771297)
chr1 (83-123)||(17726030-17726069)
[»] chr6 (5 HSPs)
chr6 (372-452)||(27444337-27444418)
chr6 (394-440)||(4660112-4660158)
chr6 (83-123)||(31444768-31444808)
chr6 (83-120)||(27444124-27444161)
chr6 (83-123)||(33054180-33054220)
[»] chr4 (6 HSPs)
chr4 (244-335)||(38467450-38467540)
chr4 (83-123)||(32651287-32651327)
chr4 (83-123)||(41810168-41810208)
chr4 (88-123)||(3649873-3649908)
chr4 (83-162)||(38467690-38467768)
chr4 (86-120)||(26720237-26720271)
[»] scaffold0475 (1 HSPs)
scaffold0475 (394-440)||(7410-7456)
[»] scaffold0152 (1 HSPs)
scaffold0152 (86-162)||(10195-10269)
[»] scaffold0014 (1 HSPs)
scaffold0014 (83-120)||(32612-32649)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 340 - 542
Target Start/End: Original strand, 5662761 - 5662964
Alignment:
Q  340 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatc 439  Q
    |||||||| |||||||||||| |||| | ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5662761 gtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaaccctcctctctctccatc 5662860  T
Q  440 tctctgcgattccgcatctccaccccctttctctcgcacccattctctccatcgc-caccgtccactccccctttctctgtaaatcgtgattcttccact 538  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5662861 tctctgtgattccccatctccaccccctttctctcgcacccattctccccatcgcacaccgtccactccccctttctctgtaaatcgtgattcttccact 5662960  T
Q  539 tctt 542  Q
    ||||    
T  5662961 tctt 5662964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 35349204 - 35349283
Alignment:
Q  244 ctttccaacttatgccttcaaattaaaatggcttttgttttcccatgcaaaagtggtgtaccaaggctatgagcttttat 323  Q
    ||||||||||| |||| |||||||||   |||||||||||||||||||||| ||| ||||||||||||| | ||||||||    
T  35349204 ctttccaacttctgccgtcaaattaagcaggcttttgttttcccatgcaaatgtgttgtaccaaggctaggtgcttttat 35349283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 44663737 - 44663700
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44663737 atctaacttattcctaatcctagttaacactccaatta 44663700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 35348991 - 35349089
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaactaatatcaacccttggatctaa 185  Q
    |||||||||||| ||||||||||||||||||||||||| |  |   || |||||||||||| | |||||||||||||  | |||||||| || |||||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctact-tattttaggcgccaatcagtatcaaccatttgatctaa 35349089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 381 - 542
Target Start/End: Complemental strand, 11649515 - 11649358
Alignment:
Q  381 gttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatctctctgcgattccgcatctccaccccctttctctcgcaccc 480  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||| |    |||||| |||||||||| ||||||||||||||||    
T  11649515 gttgcatatccatctcattggaaaccatggctttgacctaaccctcctttctctccatctat----gattccccatctccaccgcctttctctcgcaccc 11649420  T
Q  481 attctctccatcgccaccgtccactccccctttctctgtaaatcgtgattcttccacttctt 542  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11649419 attctccccatcgccaccgtccactccccctttctctgtaaatcgtgattcttccacttctt 11649358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 16262739 - 16262699
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  16262739 ctaatctaacttattcctaatcctagttaacacttcaatta 16262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 21820228 - 21820191
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaatta 21820191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 403 - 542
Target Start/End: Original strand, 52131068 - 52131206
Alignment:
Q  403 aaccatggctctgacctaaccctcctctctttccatctctctgcgattccgcatctccaccccctttctctcgcacccattctctccatcgccaccgtcc 502  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||    
T  52131068 aaccatggctctgacctaaccctcctctctctccatctctctacgattccccatctccaccccctttctcttgcacccattctccccatcgccaccgtcc 52131167  T
Q  503 actccccctttctctgtaaatcgtgattcttccacttctt 542  Q
    | |||| |   | |||||||||||||||||||||||||||    
T  52131168 agtcccgc-caccctgtaaatcgtgattcttccacttctt 52131206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 19766011 - 19766088
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaa 162  Q
    ||||||||||||||| ||||||||||||||||||||||||| |  | | ||||||||| ||||  |||||||||||||||    
T  19766011 ctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctac--ttttttaggcgccaa 19766088  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 31688059 - 31688144
Alignment:
Q  340 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct 425  Q
    |||||||| ||| |||||||| || | | ||| |||| || ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31688059 gtaaatgacaaataattaatgttatcggtttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct 31688144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 46234017 - 46233980
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaatta 46233980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 11394015 - 11394055
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  11394015 ctaatctaacttatttctaatcctagttaacactccaatta 11394055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 31896808 - 31896723
Alignment:
Q  340 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct 425  Q
    |||||||| ||| |||||||| || |   ||| |||| || ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31896808 gtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct 31896723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 31912517 - 31912432
Alignment:
Q  340 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct 425  Q
    |||||||| ||| |||||||| || |   ||| |||| || ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31912517 gtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct 31912432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 31946124 - 31946080
Alignment:
Q  381 gttgcatatccatctcattgggaaccatggctctgacctaaccct 425  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  31946124 gttgcatatccatcttattggaaacaatggctctgacctaaccct 31946080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 52130790 - 52130826
Alignment:
Q  87 tctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  52130790 tctaacttatttctaatcctaggtaacactccaatta 52130826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 36887175 - 36887107
Alignment:
Q  20 agtaggacctacccaactcatcaccatttgaccaattttagtggcttgtatgatggc-aacttactaat 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36887175 agtaggacctacccaactcatcaccatttgaccaattttagtggcttgtatgatggcaaacttactaat 36887107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 997817 - 997895
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaa 162  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||    
T  997817 ctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattctgctg-tttttaggcgccaa 997895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 3625182 - 3625234
Alignment:
Q  87 tctaacttattcctaatcctagttaacactccaattagccatgccaaccctaa 139  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  3625182 tctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 4453777 - 4453875
Alignment:
Q  85 aatctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaactaatatcaacccttggatcta 184  Q
    ||||||||||||||||||||||||||||||||||||||| |  |   ||||||||||||| ||  |||||||||||||  ||||| ||||||||||||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattcta-tg-attttaggcgccaatcaatattaacccttggatcta 4453874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 9208569 - 9208607
Alignment:
Q  85 aatctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaatta 9208607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 7161813 - 7161853
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  7161813 ctaatctaacttatttctaatcctagttaacactccaatta 7161853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 36893719 - 36893672
Alignment:
Q  27 cctacccaactcatcaccatttgaccaattttagtggcttgtatgatg 74  Q
    |||||| ||||| ||||| |||||||||||||||||||||| ||||||    
T  36893719 cctacctaactcgtcaccctttgaccaattttagtggcttgaatgatg 36893672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 340 - 458
Target Start/End: Complemental strand, 36873 - 36755
Alignment:
Q  340 gtaaatgataaacaattaatgctaaccgcttcgaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatc 439  Q
    |||||||| ||| |||||||| || | | ||| ||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||| ||| ||||||    
T  36873 gtaaatgacaaataattaatgttatcggtttccaatacagtgttgcatatccatctcattggaaacaatggctctgacttaaccctcctttctctccatc 36774  T
Q  440 tctctgcgattccgcatct 458  Q
    ||||| ||||||| |||||    
T  36773 tctctacgattcctcatct 36755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 452
Target Start/End: Complemental strand, 43024 - 42943
Alignment:
Q  372 gaatacagcgttgcatatccatctcattgggaacca-tggctctgacctaaccctcctctctttccatctctctgcgattcc 452  Q
    |||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| ||| ||||||||||| |||||||    
T  43024 gaatacagtgttgcatatccatttcattgggaaacaatggctctgacctaaccctcctttctctccatctctctacgattcc 42943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 37062 - 37025
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaatta 37025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 43237 - 43200
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaa 120  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43237 ctaatctaacttattcctaatcgtagttaacactccaa 43200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 1721556 - 1721664
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaactaatat--caacccttggatct 183  Q
    |||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||| |||||||||||||| |  |||   |||| ||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattctactg-tttttaggcgccaattgttattaaaaccattggatct 1721654  T
Q  184 aatcacttag 193  Q
    ||||||||||    
T  1721655 aatcacttag 1721664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 7608440 - 7608320
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaactaatatcaacccttggatctaa 185  Q
    ||||||||||||||||||||||||||| ||||||| || |  | |||||||||||||| |||  |||||||||||||| ||| ||| |||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctg--ttttaggcgccaacaaatctcagcccttggatctaa 7608343  T
Q  186 tcacttagccatttttccctcct 208  Q
    ||  || || |||||| ||||||    
T  7608342 tctgtttgcaattttttcctcct 7608320  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 31771428 - 31771329
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaactaatatcaacccttggatctaa 185  Q
    ||||||||||||||||||||||||||||||||||| || |  | |||||||||||||| |||  |||||||||||||| ||  ||| |||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctg--ttttaggcgccaacaaacctcagcccttggatctaa 31771331  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 32440704 - 32440666
Alignment:
Q  85 aatctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaatta 32440666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 7608309 - 7608195
Alignment:
Q  150 ttttaggcgccaactaatatcaacccttggatctaatcacttagccatttttccctcctccttgcttgacgtgggaaaattcattgtattcagactttcc 249  Q
    |||||||||||||| ||  ||| |||||||||||||||  || |||||||||   |||||||| ||| |||||  |||||| |||||||||| |||||||    
T  7608309 ttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttt---tcctcctttctt-acgtgacaaaattaattgtattca-actttcc 7608215  T
Q  250 aacttatgccttcaaattaa 269  Q
    |||| ||||| |||||||||    
T  7608214 aactgatgccgtcaaattaa 7608195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 22368254 - 22368216
Alignment:
Q  85 aatctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  22368254 aatctaacttattcctaatcctagttaacacttcaatta 22368216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 31771297 - 31771183
Alignment:
Q  150 ttttaggcgccaactaatatcaacccttggatctaatcacttagccatttttccctcctccttgcttgacgtgggaaaattcattgtattcagactttcc 249  Q
    |||||||||||||| ||  ||| |||||||||||||||  || |||| ||||   |||||||| ||| |||||  |||||| |||||||||| |||||||    
T  31771297 ttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttt---tcctcctttctt-acgtgacaaaattaattgtattca-actttcc 31771203  T
Q  250 aacttatgccttcaaattaa 269  Q
    |||| ||||| |||||||||    
T  31771202 aactgatgccgtcaaattaa 31771183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 17726030 - 17726069
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  17726030 ctaatctaa-ttattcctaatcctagttaacactccaatta 17726069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 27444337 - 27444418
Alignment:
Q  372 gaatacagcgttgcatatccatctcattgggaacca-tggctctgacctaaccctcctctctttccatctctctgcgattcc 452  Q
    |||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| ||| ||||||||||| |||||||    
T  27444337 gaatacagtgttgcatatccatttcattgggaaacaatggctctgacctaaccctcctttctctccatctctctacgattcc 27444418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 4660158 - 4660112
Alignment:
Q  394 ctcattgggaaccatggctctgacctaaccctcctctctttccatct 440  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  4660158 ctcattgggaaccatggctctgacctaaccctcctctctctccatct 4660112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 31444768 - 31444808
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31444768 ctaatctaacttattcctaatcctagttaacactccaatta 31444808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 27444124 - 27444161
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaa 120  Q
    |||||||||||||||||||||| |||||||||||||||    
T  27444124 ctaatctaacttattcctaatcgtagttaacactccaa 27444161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 33054220 - 33054180
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  33054220 ctaatctaacttattcctaatcctaattaacactacaatta 33054180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 38467540 - 38467450
Alignment:
Q  244 ctttccaacttatgccttcaaattaaaatggcttttgttttcccatgcaaaagtggtgtaccaaggctatgagcttttatggcatatgattt 335  Q
    ||||||||||| |||| |||||||||   |||||||||||||| ||||||| ||| ||||||||||||| | ||||||||| ||||||||||    
T  38467540 ctttccaacttctgccgtcaaattaagtaggcttttgttttcc-atgcaaatgtgttgtaccaaggctaggtgcttttatgacatatgattt 38467450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 32651327 - 32651287
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32651327 ctaatctaacttattcctaatcctagttaacactccaatta 32651287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 41810168 - 41810208
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  41810168 ctaatctaacttatttctaatcctagttaacactccaatta 41810208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 3649873 - 3649908
Alignment:
Q  88 ctaacttattcctaatcctagttaacactccaatta 123  Q
    ||||||||||||||||||||||||||||||||||||    
T  3649873 ctaacttattcctaatcctagttaacactccaatta 3649908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 38467768 - 38467690
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaa 162  Q
    |||||||||||||||  |||||||||||||||||||||||| |  |   ||||||||||||||| | |||||||||||||    
T  38467768 ctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctact-tattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 26720237 - 26720271
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaa 120  Q
    |||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaa 26720271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 7456 - 7410
Alignment:
Q  394 ctcattgggaaccatggctctgacctaaccctcctctctttccatct 440  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  7456 ctcattgggaaccatggctctgacctaaccctcctctctctccatct 7410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 10195 - 10269
Alignment:
Q  86 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgttttttaggcgccaa 162  Q
    |||||||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||  |||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctac--ttttttaggcgccaa 10269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 32612 - 32649
Alignment:
Q  83 ctaatctaacttattcctaatcctagttaacactccaa 120  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  32612 ctaatctaacttatttctaatcctagttaacactccaa 32649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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