View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12326_low_5 (Length: 542)
Name: NF12326_low_5
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 9555006 - 9555525
Alignment:
| Q |
11 |
gaacctgtgaaagaaacaacactagcaaagaaatcaggagcaccattacctagagagagtaatgttacaccagctatggttggagaaagtcttaagatgt |
110 |
Q |
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| T |
9555006 |
gaacttgtgaaagaaacaacactagcaaagaaatcaggagcaccattacctagagagagtaatgttacaccagctatggttggagaaagtcttaagatgt |
9555105 |
T |
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| Q |
111 |
tagacaaaccttctagagatgtgcaaaagtaatttgaagctgtgtcggctaaaagatagaataaaactactagccataaaacaagtagtgtgtgaccaag |
210 |
Q |
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| T |
9555106 |
tagacaaaccttctagagatgtgcaaaagtaatttgaagctgtgtcggctaaaagatagaataaaactactagccataaaacaagtagtgtgtgaccaag |
9555205 |
T |
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| Q |
211 |
aattggtgaatttccaaggttgcaataggagatttggagatagtttatgtaaccttttgatctacaatcagaatgtgttttgacataaatacacttagaa |
310 |
Q |
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| T |
9555206 |
aattggtgaatttccaaggttgcaataaaagatttgaagatagtttatgtaaccttttgatctacaatcagaatgtgttttgacataaatacacttagaa |
9555305 |
T |
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| Q |
311 |
gtgtaatttgagtaattgtgaagttctgagcatgaatcaactaggatgtcactagtgagaattctagcatggttgaagagttttgaggaaacatgatgaa |
410 |
Q |
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| T |
9555306 |
gtgtaatttgagtaattgtgaagttctgagcatgaatcaactaggatgtcactagtgagaattctagcatggttgaagagttttgaggaaacatgatgaa |
9555405 |
T |
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| Q |
411 |
aatcagaattagaattggaaggattgatataaagtttgatggnnnnnnncaggatgaagaggaaggatgtgttaaggagaagagtgagnnnnnnnggttg |
510 |
Q |
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| T |
9555406 |
aatgagaattagaatttgaaggattgatataaagtttgatggaaaaaaacaggatgaagaggaaggatgtgttgaggagaagagtgagtttttttggttg |
9555505 |
T |
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| Q |
511 |
tgatttggagttggaagtga |
530 |
Q |
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| T |
9555506 |
tgatttggagttggaagtga |
9555525 |
T |
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