View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12326_low_8 (Length: 372)
Name: NF12326_low_8
Description: NF12326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12326_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 57 - 367
Target Start/End: Complemental strand, 8765358 - 8765048
Alignment:
| Q |
57 |
tgaggggcatttgtttttccttatctaaacttttgtttatagacaaaataaaacggatgtaaagtatggttttgtacattttagggcatgtcttctatca |
156 |
Q |
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| T |
8765358 |
tgaggggcatttgtttttccttatctaaacttttgtttatagataaaataaaacggatgtaaagtgtggttttgtacattttggggcatgtattctatca |
8765259 |
T |
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| Q |
157 |
tgtatttaggtttcgacgttagtattgttgaaacataggagcctacattggagtagcggtgaagctagccgaaattttatgagaggttggttcaaatata |
256 |
Q |
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| T |
8765258 |
tgtatttaggtttcgacgttagtattgttgaaacataggagcctacattggagtagcggtgaagctagccgaaattttatgagaggttggttcaaatata |
8765159 |
T |
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| Q |
257 |
taaaagaaattgaatatacttttacgaatcttatcttgacaattttatgagcagaaacatattttgtctgacatccctcaaggcaaatccgtgttcatca |
356 |
Q |
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| T |
8765158 |
taaaagaaattgaatatacttttacgaatcttatcttgacaattttatgaggagaaacatattttgtctgccatccctcaaggcaaatccgtgttcatca |
8765059 |
T |
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| Q |
357 |
caggttctgct |
367 |
Q |
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|||| |||||| |
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| T |
8765058 |
caggctctgct |
8765048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 8765470 - 8765430
Alignment:
| Q |
19 |
ggttcaaatgtgaagtttcgtagttgatagacaatacgtga |
59 |
Q |
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| T |
8765470 |
ggttcaaatgtgaagtttcgtagttgatagacaatacgtga |
8765430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 36487758 - 36487725
Alignment:
| Q |
269 |
aatatacttttacgaatcttatcttgacaatttt |
302 |
Q |
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| T |
36487758 |
aatatacttttacgaatcttatcttgacaatttt |
36487725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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