View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12327_high_2 (Length: 347)
Name: NF12327_high_2
Description: NF12327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12327_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 10611947 - 10612266
Alignment:
| Q |
14 |
agaagaggtagactagaatgtacaagtgaacagaaacattcagaacctgataaacttaagtaaccaagtttcatgtaatgatgcaccattatctatattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10611947 |
agaagaggtagactagaatgtacaagtgaacagaaacattcagaacctgataaacttaagtaaccaagtttcatgtaatgatgcaccattatctatattt |
10612046 |
T |
|
| Q |
114 |
gtttattgccatagtttnnnnnnnncctttcatactttgtgggacatcctgtttttcgatataatataatctcatcagtgtcacatggccagccaatttc |
213 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612047 |
gtttattgccatggtttaaaaaaaacctttcatactttgtgggacatcctgtttttcgatataatataatctcatcagtgtcacatggccagccaatttc |
10612146 |
T |
|
| Q |
214 |
aactcttgttaaaatttgaatactttatattaatgtggttgttgattttatattcttaatcctatcaacttattattttatatacttctgttcaaatgtt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10612147 |
aactcttgttaaaatttgaatactttatattaatgtggttgttgattttatattcttaatcctaccaactcattattttatatacttctgttcaaatgtt |
10612246 |
T |
|
| Q |
314 |
ggaatcagcatcattatttt |
333 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
10612247 |
ggaatcggcatcattatttt |
10612266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 10603858 - 10603939
Alignment:
| Q |
44 |
cagaaacattcagaacctgataaacttaagtaaccaagtttcatgtaatgatgcaccattatctatatttgtttattgccat |
125 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||| ||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
10603858 |
cagaaacattcaaaacctgataaactcaagtgaccaagttacatgtcgtgatgcaccattaactatattttcttattgccat |
10603939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 10603964 - 10604104
Alignment:
| Q |
140 |
ctttcatactttgtgggacatcctgtttttcgatataatataatctcatcagtgtcacatggccagccaatttcaactcttgttaaaatttgaata--ct |
237 |
Q |
| |
|
|||||||||||||| || |||| |||||| |||||||||||||||| ||| |||||| || ||||| |||||||||||||||| ||||| || | |
|
|
| T |
10603964 |
ctttcatactttgtaacacttcctatttttc-atataatataatctcaatagtatcacattgctagccagtttcaactcttgttaacatttgtttaattt |
10604062 |
T |
|
| Q |
238 |
ttatattaatgtggttgttgattttata--ttcttaatccta |
277 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
10604063 |
ttatattaatgtgattgttgactttatatgttcttaatccta |
10604104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University