View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12327_low_1 (Length: 564)
Name: NF12327_low_1
Description: NF12327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12327_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 36434500 - 36435040
Alignment:
| Q |
1 |
agaaagtttgatagcttagtgaaggattcataaatttttcttagacttcttattgttgaaaatgtaatgacttttggttctaatctggttgcatgctgta |
100 |
Q |
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| T |
36434500 |
agaaagtttgatagcttagtgaaggattcataaatttttcttagacttcttattgttgaaaatgtaatgacttttggttctaatctggttgcatgctgta |
36434599 |
T |
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| Q |
101 |
atgcaattgctttcaatttgatttgtgtgccttttaattgttatcattttgctttttctcccacaactcaaaaaacaaattgttgaaaattcaaccccaa |
200 |
Q |
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| T |
36434600 |
atgcaattgctttcaatttgatttgtgtgccttttaattgttatcgttttgctttttctcccacaactcaaaaaacaaattgttgaaaattcaaccccaa |
36434699 |
T |
|
| Q |
201 |
acgacataactactatgacaccaatcacacaaacaaacagaaccgcaacatagtgaaatgattgttcttccaattttgaacagaaccctttcatcccatg |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36434700 |
acgacataactactatgacaccaatcacgcaaacaaacagaactgtaacatagtgaaatgattgttcttccaattttgaacagaaccctttcatcccatg |
36434799 |
T |
|
| Q |
301 |
acaggttgctcacaatatacaagaaattagaagttggaatgtaagaaag--gagaaggctgaagagtgcatcaatggtagtttcttgtggccttgaatta |
398 |
Q |
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| T |
36434800 |
acaggttgctcacaatatacaagaaattagaagttggaatgtaagaaaggagagaaggctgaacagtgcatcaatggtagtttcttgtggccttgaatta |
36434899 |
T |
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| Q |
399 |
tctattcaaaagtttttacaacaagcggatataacagtggaatctgaatatcttccttgaatgtattgggcattttggttgtctcatttgtggttttgaa |
498 |
Q |
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| T |
36434900 |
tctattcaaaagtgtttacaacaagcggatataacagtggaatctgaatgtcttccttgaatgtattgggcattttggttctctcatttatggttttgaa |
36434999 |
T |
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| Q |
499 |
attgggactcaagctcttcaattttataatgtgtagtgttg |
539 |
Q |
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| T |
36435000 |
attgggactcaagctcttcaattttataaggtgtagtgttg |
36435040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44989413 - 44989366
Alignment:
| Q |
1 |
agaaagtttgatagcttagtgaaggattcataaatttttcttagactt |
48 |
Q |
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||||||| | |||||||||||||||||||| ||||| ||||||||||| |
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| T |
44989413 |
agaaagtgtaatagcttagtgaaggattcagaaattcttcttagactt |
44989366 |
T |
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