View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12327_low_2 (Length: 458)
Name: NF12327_low_2
Description: NF12327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12327_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 45515569 - 45515826
Alignment:
| Q |
1 |
tgaagatggggtagaaaaagtatggttctacttcgtcatagcgctcggttttgcaactggcttatggggagttattggcactttgtggttcaagaagaat |
100 |
Q |
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| T |
45515569 |
tgaagatggggtagaaaaagtatggttctacttcgtcatagcgctcggttttgcaactggcttatggggagttattggcactttgtggttcaagaagaat |
45515668 |
T |
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| Q |
101 |
tggagacatgcttacttcagatgggttgaagatattgttgacgagatttatgtggcagttgtgataaaggtggcaaagaaaaagaagaatatgataagaa |
200 |
Q |
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| T |
45515669 |
tggagacatgcttacttcagatgggttgaagatattgttgacgagatttatgtggcagttgtaataaaagtggcaaagaaaaagaagaatatgataagaa |
45515768 |
T |
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| Q |
201 |
accataaccacgagtgattctgtgttatgtttcaaatgagagtaaggttcagaccaca |
258 |
Q |
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| T |
45515769 |
accataaccacgagtgattctgtgttatgtttcaaatgagaataaggttcagaccaca |
45515826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 322 - 448
Target Start/End: Original strand, 45515890 - 45516016
Alignment:
| Q |
322 |
cttcatcatttgagtcaataaactcatctttgttgtcttcaacgcttgtgtcatcgatgtcacaatcaaaccacaatcacaagtgtgtatttttatagat |
421 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515890 |
cttcatcatttgagtcactaaactcatctttgttgtcttcaacgcttgtgtcatcgatgtcacaatcaaaccacaatcacaagtgtgtatttttatagat |
45515989 |
T |
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| Q |
422 |
gaaaatcacataattgtttcacaggtt |
448 |
Q |
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| T |
45515990 |
gaaaatcacataattgttttacaggtt |
45516016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 4474969 - 4475125
Alignment:
| Q |
62 |
ttatggggagttattggcactttgtggttcaagaagaattggagacatgcttacttcagatgggttgaagatattgttgacgagatttatgtggcagttg |
161 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||| |||||| ||| ||| || ||| |||||| ||||| |
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| T |
4474969 |
ttatggggagttattggcactttctggttcaagaagaattggagacaagattactttagatgggtggaagatgttgctgatgaaattcatgtggaagttg |
4475068 |
T |
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| Q |
162 |
tgataaaggtggcaaagaaaaagaagaatatgataagaaaccataaccacgagtgattct |
221 |
Q |
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| T |
4475069 |
taataaaagtggcaaagataaagtag---atgataagaaaccataaatacaagtgattct |
4475125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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