View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12327_low_5 (Length: 310)
Name: NF12327_low_5
Description: NF12327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12327_low_5 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 2531889 - 2531594
Alignment:
| Q |
18 |
ctagtatcaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgcgaacgtggactattagtgatactcaggttac |
117 |
Q |
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| T |
2531889 |
ctagtaccaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgggaacgtggactattagtgatactcagattac |
2531790 |
T |
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| Q |
118 |
taacattgagacctttgcatgaatgaaacaagaagacctgtagcatcaagaaaaatattaatttggtcgttcaatcac--nnnnnnncgtgtgtgtaggg |
215 |
Q |
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| T |
2531789 |
taacattgagacccttgcatgaatgaaacaagaagacctgtagcatcaataaaaatattaatttggtcgttcaatcaccttttttttggtgtgtgtaggg |
2531690 |
T |
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| Q |
216 |
gg-tgtcaattgtttaagatgatacataccccaggtcgagcacatgatttgcattgccaccaagtcgaaccatctccaccgagtactcctcgacca |
310 |
Q |
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| T |
2531689 |
ggatgtcaattgtataagatgatacataccccaggtcgagcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactcctcgacca |
2531594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 2541432 - 2541255
Alignment:
| Q |
18 |
ctagtatcaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgcgaacgtggactattagtgatactcaggttac |
117 |
Q |
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| T |
2541432 |
ctagtaccaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgggaacgtggactattagtgatactcagattac |
2541333 |
T |
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| Q |
118 |
taacattgagacctttgcatgaatgaaacaagaagacctgtagcatcaagaaaaatattaatttggtcgttcaatcac |
195 |
Q |
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| T |
2541332 |
taacattgagacccttgcatgaatgaaacaagaagacctgtagcatcaataaaaatattaatttggtcgttcaatcac |
2541255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 2541008 - 2540917
Alignment:
| Q |
219 |
gtcaattgtttaagatgatacataccccaggtcgagcacatgatttgcattgccaccaagtcgaaccatctccaccgagtactcctcgacca |
310 |
Q |
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| T |
2541008 |
gtcaattgtttaagatgatacataccccaggtcgatcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactcctcgacca |
2540917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 2555328 - 2555216
Alignment:
| Q |
30 |
gaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgcgaacgtggactattagtgatactcaggttactaacattgagac |
129 |
Q |
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| T |
2555328 |
gaattaatagatatatgagaaaatgttgaatgattgcacatagtaacagcaacatgagatcttgggctattcaggatcctcaagtttctaacattgagac |
2555229 |
T |
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| Q |
130 |
ctttgcatgaatg |
142 |
Q |
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| T |
2555228 |
cattgcaggaatg |
2555216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 1829977 - 1829849
Alignment:
| Q |
17 |
actagtatcaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgcgaacgtggactattagtgatactcaggtta |
116 |
Q |
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||||||| |||||||||| || |||| || ||| ||||||| || |||||||||||||| | |||||| |||| || ||||| ||||| || |||||| |
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| T |
1829977 |
actagtagcaggtgaattgatggatacatgagagaatgttgtacgattgcacatattaatggatacatgagaactcgggctattggtgatccttaggtta |
1829878 |
T |
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| Q |
117 |
ctaacattgagacctttgcatgaatgaaa |
145 |
Q |
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| T |
1829877 |
ctaacactaagatcgttgcaagaatgaaa |
1829849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 1864422 - 1864294
Alignment:
| Q |
17 |
actagtatcaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgcgaacgtggactattagtgatactcaggtta |
116 |
Q |
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||||||| |||||||||| || |||| || ||| ||||||| || |||||||||||||| | |||||| |||| || ||||| ||||| || |||||| |
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| T |
1864422 |
actagtagcaggtgaattgatggatacatgagagaatgttgtacgattgcacatattaatggatacatgagaactcgggctattggtgatccttaggtta |
1864323 |
T |
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| Q |
117 |
ctaacattgagacctttgcatgaatgaaa |
145 |
Q |
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| T |
1864322 |
ctaacactaagatcgttgcaagaatgaaa |
1864294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 2565002 - 2564890
Alignment:
| Q |
30 |
gaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgcgaacgtggactattagtgatactcaggttactaacattgagac |
129 |
Q |
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|||||||||||||||| ||||||||||| | ||||||||||||||||| ||||| || ||| ||||| ||| |||| ||| ||||||||||||| |
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| T |
2565002 |
gaattaatagatatatgagaaaatgttgaatgattgcacatattaacagaaacatgagattttgggctattcaagatcctcaagttcctaacattgagac |
2564903 |
T |
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| Q |
130 |
ctttgcatgaatg |
142 |
Q |
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| T |
2564902 |
cattgcaggaatg |
2564890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 2549840 - 2549780
Alignment:
| Q |
18 |
ctagtatcaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacag |
78 |
Q |
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| T |
2549840 |
ctagtagcaggagaactaatggatatataggaaaatgttgcatgattgcacatattaacag |
2549780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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