View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12327_low_6 (Length: 255)
Name: NF12327_low_6
Description: NF12327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12327_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2540822 - 2540581
Alignment:
| Q |
1 |
caagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaacttatacatatgattataagttt |
100 |
Q |
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| T |
2540822 |
caagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaatcattttaaaagccgcaattaaaacttataca-atgattataagttt |
2540724 |
T |
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| Q |
101 |
attgtactaggtcttaaaagtgaacgttagatatactaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccat |
200 |
Q |
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| T |
2540723 |
attgtactaggtcttaaaagtgaatgttagatatattaaatacctgaataagaatatgtttgttggtgcaaggaccgttaaaacttagtttcgacaccat |
2540624 |
T |
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| Q |
201 |
aaatgtttttcctgctggtatgaccagtgttgacatctctgct |
243 |
Q |
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| T |
2540623 |
aaatgtttttcctactggtataaccagtgttgacatctctgct |
2540581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2531499 - 2531245
Alignment:
| Q |
1 |
caagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaa------------cttatacatat |
88 |
Q |
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| T |
2531499 |
caagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaaatacaattaaaacttatacatat |
2531400 |
T |
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| Q |
89 |
gattataagtttattgtactaggtcttaaaagtgaacgttagatatactaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttag |
188 |
Q |
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| T |
2531399 |
gattataagtttattgtactaggtcttaaaagtgaatgttagatatattaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttag |
2531300 |
T |
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| Q |
189 |
tttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgct |
243 |
Q |
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| T |
2531299 |
tttcgacaccataaatgtttttcctacgggtatgaccagtgttgacatctctgct |
2531245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 1827912 - 1827848
Alignment:
| Q |
173 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatc |
237 |
Q |
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| T |
1827912 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatc |
1827848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 1862357 - 1862293
Alignment:
| Q |
173 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatc |
237 |
Q |
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| T |
1862357 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatc |
1862293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 2562505 - 2562429
Alignment:
| Q |
167 |
tgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgct |
243 |
Q |
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|||||||||| |||||| || |||||||||||| || ||||||| |||||||| | |||||||||||| ||||| |
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| T |
2562505 |
tgcaaggaccactaaaatttgctttcgacaccatgtatttttttccagctggtattattagtgttgacatccctgct |
2562429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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