View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12328_high_1 (Length: 485)
Name: NF12328_high_1
Description: NF12328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12328_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 168 - 467
Target Start/End: Complemental strand, 40626975 - 40626676
Alignment:
| Q |
168 |
tttagtttggtagtttacatatttgtatttgggacaaaagttgtctcattgtagcaacaaaaatcttagtttttgtccgatttcttaccctccattatgt |
267 |
Q |
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| T |
40626975 |
tttagtttggtagtttacatatttgtatttgggacaaaagttgtctcattgtagcaacaaaaatcttagtttttgtccaatttcttaccctccattatgt |
40626876 |
T |
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| Q |
268 |
cttgtatcatgaatagttttaaatcaagttgtaccattgaattccatattttctacaaatcaagcgcaccctcgctcacttttgatataacgcttcgtcc |
367 |
Q |
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| T |
40626875 |
cttgtatcatgaatagttttaaatcaagttgtaccattgaattccatattttctacaaatcaagcgcatcctcgctcacttttgatataacgctttgtcc |
40626776 |
T |
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| Q |
368 |
accctttcaaaaatatgttcgaaagtatttttagacagtaaacagtgttttgaagacattcgttagcatttccctagtttacaaaacgttgggaaagtag |
467 |
Q |
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| T |
40626775 |
accctttcaaaaatatgttcgaaagtatttttagacagtaaacattgttttgaagatattcgttagcatttctctagtttacaaaacgttgggaaagtag |
40626676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 40627129 - 40627058
Alignment:
| Q |
14 |
agatcaagagagggagatagacacatattttggaaggagagagtaattggaagtagatgatccattttgaaa |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40627129 |
agatcaagagagggagatagacacatattttggaaggagagagtaattggaagtagatgatccattttgaaa |
40627058 |
T |
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