View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12328_low_3 (Length: 375)

Name: NF12328_low_3
Description: NF12328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12328_low_3
NF12328_low_3
[»] chr5 (1 HSPs)
chr5 (18-356)||(43168740-43169079)
[»] chr8 (4 HSPs)
chr8 (290-343)||(10659198-10659251)
chr8 (286-354)||(11954588-11954656)
chr8 (286-354)||(1029728-1029795)
chr8 (240-354)||(41566123-41566239)
[»] chr6 (5 HSPs)
chr6 (281-342)||(3008845-3008906)
chr6 (296-342)||(29032698-29032744)
chr6 (286-342)||(31304019-31304075)
chr6 (297-343)||(8210011-8210057)
chr6 (305-354)||(6257237-6257286)
[»] chr4 (9 HSPs)
chr4 (240-354)||(2815080-2815196)
chr4 (286-348)||(1745425-1745487)
chr4 (286-352)||(18402877-18402943)
chr4 (286-346)||(38011660-38011720)
chr4 (264-343)||(44136777-44136857)
chr4 (286-343)||(25100370-25100427)
chr4 (290-343)||(44207002-44207055)
chr4 (288-340)||(5383725-5383777)
chr4 (299-339)||(41421636-41421676)
[»] chr1 (7 HSPs)
chr1 (286-346)||(16256463-16256523)
chr1 (290-343)||(50959526-50959579)
chr1 (286-346)||(15394630-15394690)
chr1 (286-346)||(27901220-27901280)
chr1 (290-343)||(18628970-18629023)
chr1 (286-343)||(33323885-33323942)
chr1 (290-354)||(48563248-48563312)
[»] chr7 (6 HSPs)
chr7 (299-354)||(10019741-10019796)
chr7 (246-342)||(27900341-27900441)
chr7 (264-346)||(20118260-20118341)
chr7 (290-354)||(28002635-28002700)
chr7 (286-339)||(10623340-10623393)
chr7 (299-343)||(28302156-28302200)
[»] chr2 (8 HSPs)
chr2 (281-350)||(39228883-39228952)
chr2 (288-354)||(12419529-12419595)
chr2 (288-354)||(12431589-12431655)
chr2 (306-351)||(5136197-5136242)
chr2 (305-346)||(38002029-38002070)
chr2 (286-342)||(36254573-36254629)
chr2 (296-343)||(9848109-9848156)
chr2 (286-348)||(18482107-18482169)
[»] chr3 (4 HSPs)
chr3 (255-351)||(24404998-24405094)
chr3 (308-343)||(28421122-28421157)
chr3 (281-342)||(3153900-3153961)
chr3 (286-343)||(47005842-47005899)
[»] scaffold0003 (1 HSPs)
scaffold0003 (264-343)||(353239-353319)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 43169079 - 43168740
Alignment:
Q  18 aaaaatatttctagtataaccgtataacaatattttaaatattgattaataaacttcgatgtttaaagaataaaattgatctaaaaaatcaaagtataca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43169079 aaaaatatttctagtataaccgtataacaatattttaaatattgattaataaacttcaatgtttaaagaataaaattgatctaaaaaatcaaagtataca 43168980  T
Q  118 caaaatatatatgtaatgatatagtaattgtaaagaggttttctgtgggtctacggctgtttggtatgtgtttttgcttatgttcttgattagcgactgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43168979 caaaatatatatgtaatgatatagtaattgtaaagaggttttccgtgggtctacggctgtttggtatgtgtttttgcttatgttcttgatcagcgactgg 43168880  T
Q  218 atggatgacaattatggcctctttttgatgtggttaggtttaaaa-ccccgaaagggtctgttatgtttacccgaaagagtctggttgctaacgtattgg 316  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  43168879 atggatgacaattatggcctctttctgatgtggttaggtttaaaacccccgaaagggtctgttctgtttacccgaaagagtctggttgctaacgtattag 43168780  T
Q  317 actcatccttcgatttgagttcttacgtgtctgtttgaca 356  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  43168779 actcatccctcaatttgagttcttacgtgtctgtttgaca 43168740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 10659251 - 10659198
Alignment:
Q  290 gaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  10659251 gaaagagtctggttgctgacgtattggactcatccctcgatctgagttcttacg 10659198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 11954656 - 11954588
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgtttga 354  Q
    ||||||||| ||||||||  ||||||||||||||||||| | ||| |||||||||||| ||||||||||    
T  11954656 acccgaaagggtctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttga 11954588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 1029795 - 1029728
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgtttga 354  Q
    ||||||||| ||||| || ||||||||||||||||||||  |||| |||||||||||| || |||||||    
T  1029795 acccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagttcttacgcgtatgtttga 1029728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 41566123 - 41566239
Alignment:
Q  240 ttttgatgtggttaggtttaa-aaccccgaaagggtctg-ttatgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagtt 337  Q
    ||||||||||||| | ||| | || ||||||||||| || || |||| ||||  ||| |||||||| |||||||||| |||||||||  |||| ||||||    
T  41566123 ttttgatgtggtttgcttttataaacccgaaagggtatggttctgttaacccataagggtctggttactaacgtattagactcatcccacgatctgagtt 41566222  T
Q  338 cttacgtgtctgtttga 354  Q
    |||||| || |||||||    
T  41566223 cttacgcgtatgtttga 41566239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 3008906 - 3008845
Alignment:
Q  281 tgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttac 342  Q
    |||| ||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||||    
T  3008906 tgttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagttcttac 3008845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 29032698 - 29032744
Alignment:
Q  296 gtctggttgctaacgtattggactcatccttcgatttgagttcttac 342  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||    
T  29032698 gtctggttactaacgtattggactcatccctcgatctgagttcttac 29032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 31304019 - 31304075
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttac 342  Q
    ||||||||| |||||||| || |||||||| |||||||| ||||| |||||||||||    
T  31304019 acccgaaagggtctggttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 8210011 - 8210057
Alignment:
Q  297 tctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||||| ||||| |||||||||||||| ||||| ||||||||||||    
T  8210011 tctggttactaacttattggactcatccctcgatctgagttcttacg 8210057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 6257237 - 6257286
Alignment:
Q  305 ctaacgtattggactcatccttcgatttgagttcttacgtgtctgtttga 354  Q
    ||||| |||||||||||||| ||||| |||||||||||| || |||||||    
T  6257237 ctaacatattggactcatccctcgatctgagttcttacgcgtttgtttga 6257286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 354
Target Start/End: Complemental strand, 2815196 - 2815080
Alignment:
Q  240 ttttgatgtggttaggtttaa-aaccccgaaagggtctg-ttatgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagtt 337  Q
    ||||||||||||| ||||| | || ||||| ||||| || ||||||| || || ||| |||||||| |||| |||||||||||||||| |||| ||||||    
T  2815196 ttttgatgtggtttggttttataaacccgagagggtatggttatgttaactcggaagggtctggttactaatgtattggactcatcctacgatatgagtt 2815097  T
Q  338 cttacgtgtctgtttga 354  Q
    |||||| || |||||||    
T  2815096 cttacgcgtatgtttga 2815080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 1745425 - 1745487
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtct 348  Q
    ||||||||| |||||||| |||||||||||||||||||| || || |||||||||||| ||||    
T  1745425 acccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgcgtct 1745487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 18402943 - 18402877
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgttt 352  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||| |||||    
T  18402943 acccgaaagggtctggttactaacgtattgaactcatccatcgatctgagttcttacatgtttgttt 18402877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 38011720 - 38011660
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgt 346  Q
    ||||| ||| |||||||| |||||||||||||||||||| ||||| ||| |||||||||||    
T  38011720 acccgcaagggtctggttactaacgtattggactcatccctcgatctgaattcttacgtgt 38011660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 44136777 - 44136857
Alignment:
Q  264 cccgaaagggtctgtt-atgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    |||||||||||||| | ||||  ||||||||| |||||||| || ||||||||||||||||| |||||  |||||||||||    
T  44136777 cccgaaagggtctggtcatgtcaacccgaaagggtctggttactgacgtattggactcatccctcgatccgagttcttacg 44136857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 25100370 - 25100427
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||||||| ||||||||||| |||||||| |||||||| ||||| |||||| |||||    
T  25100370 acccgaaagggtctggttgctgacgtattgaactcatccctcgatctgagtttttacg 25100427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 44207055 - 44207002
Alignment:
Q  290 gaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||| ||||||||| | ||||||||||||||||| ||||| ||||||||||||    
T  44207055 gaaagggtctggttgttgacgtattggactcatccatcgatctgagttcttacg 44207002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 5383725 - 5383777
Alignment:
Q  288 ccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttctt 340  Q
    ||||||| ||||||| | | ||||||||||||||||| ||||||| |||||||    
T  5383725 ccgaaagggtctggtagttgacgtattggactcatccctcgatttaagttctt 5383777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 41421676 - 41421636
Alignment:
Q  299 tggttgctaacgtattggactcatccttcgatttgagttct 339  Q
    ||||| |||||||||||||||||| |||||||| |||||||    
T  41421676 tggttactaacgtattggactcatgcttcgattggagttct 41421636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 16256463 - 16256523
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgt 346  Q
    ||||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||    
T  16256463 acccgaaagggtctgtttgctgacgtattggactcatccctcgatctgagttcttacgtgt 16256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 50959579 - 50959526
Alignment:
Q  290 gaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||    
T  50959579 gaaagggtctggttactgacgtattggactcatccctcgatctgagttcttacg 50959526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 15394630 - 15394690
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgt 346  Q
    |||||||||  ||||||| |||| ||||||||| ||||| ||||| |||||||||||||||    
T  15394630 acccgaaaggatctggttactaatgtattggacgcatccctcgatctgagttcttacgtgt 15394690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 27901280 - 27901220
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgt 346  Q
    ||||||||| ||||| |||||||  |||||||||||||| |||||  ||||||||||||||    
T  27901280 acccgaaagggtctgtttgctaatatattggactcatccctcgatcagagttcttacgtgt 27901220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 18629023 - 18628970
Alignment:
Q  290 gaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||| |||||||| || ||||||||||||||||| || || ||||||||||||    
T  18629023 gaaagggtctggttactgacgtattggactcatccctcaatctgagttcttacg 18628970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 33323885 - 33323942
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||||||| || |||||  | ||||||||||||||||| ||||| ||||||||||||    
T  33323885 acccgaaagggtatggttaatgacgtattggactcatccctcgatctgagttcttacg 33323942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 48563248 - 48563312
Alignment:
Q  290 gaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgtttga 354  Q
    ||||| |||||||| ||||| ||||||||||||||  |||| | |||||||||| || |||||||    
T  48563248 gaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttga 48563312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 10019796 - 10019741
Alignment:
Q  299 tggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgtttga 354  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  10019796 tggttactaacgtattggactcatccctcgatttgagttcttacgcgtctgattga 10019741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 27900441 - 27900341
Alignment:
Q  246 tgtggttaggttt-aaaaccccgaaagggtctgtt-atgttta--cccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttctta 341  Q
    ||||||| ||||| |||| ||||||||||| |||| ||||| |  |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||    
T  27900441 tgtggttcggtttcaaaaacccgaaagggtatgtttatgttaaaacccgaaagggtctggttactaacatattggactcatccctcgatctgagttctta 27900342  T
Q  342 c 342  Q
    |    
T  27900341 c 27900341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 20118341 - 20118260
Alignment:
Q  264 cccgaaagggtctgttatgttta-cccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgt 346  Q
    |||||||||||||| |  ||||| |||||||| ||  ||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  20118341 cccgaaagggtctggttcgtttaacccgaaagggt--ggttgctgacgtattggactcatccctcgatatgagttcttacgtgt 20118260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 28002635 - 28002700
Alignment:
Q  290 gaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg-tgtctgtttga 354  Q
    ||||| ||||||||  |||||||||| |||||||| ||||| |||||||||||| |||||||||||    
T  28002635 gaaagggtctggttattaacgtattgaactcatccctcgatctgagttcttacgatgtctgtttga 28002700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 10623340 - 10623393
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttct 339  Q
    |||||| || || ||||| |||||||||||||||||||| ||||| ||||||||    
T  10623340 acccgatagggtttggttactaacgtattggactcatccctcgatctgagttct 10623393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 28302200 - 28302156
Alignment:
Q  299 tggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||| |||||||||||||||||||| ||||| || |||||||||    
T  28302200 tggttactaacgtattggactcatccctcgatctgtgttcttacg 28302156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 39228883 - 39228952
Alignment:
Q  281 tgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgt 350  Q
    |||| |||||||||  ||||||| |||||||||| ||||||||| ||||| |||||||||||| ||||||    
T  39228883 tgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgt 39228952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 12419595 - 12419529
Alignment:
Q  288 ccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgtttga 354  Q
    ||||||| || ||||| |||||||||||||||||||| | ||| |||||||||||| || |||||||    
T  12419595 ccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttga 12419529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 12431655 - 12431589
Alignment:
Q  288 ccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgtttga 354  Q
    ||||||| || ||||| |||||||||||||||||||| | ||| |||||||||||| || |||||||    
T  12431655 ccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttga 12431589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 5136197 - 5136242
Alignment:
Q  306 taacgtattggactcatccttcgatttgagttcttacgtgtctgtt 351  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||    
T  5136197 taacgtattggactcatccctcgatctgagttcttacgcgtctgtt 5136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 38002029 - 38002070
Alignment:
Q  305 ctaacgtattggactcatccttcgatttgagttcttacgtgt 346  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  38002029 ctaacgtattggactcatccctcgatctgagttcttacgtgt 38002070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 36254573 - 36254629
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttac 342  Q
    |||||||||  ||||||| ||| |||||||||||||||| ||||| |||||||||||    
T  36254573 acccgaaaggttctggtttctatcgtattggactcatccctcgatctgagttcttac 36254629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 9848109 - 9848156
Alignment:
Q  296 gtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    |||||||| || ||||||||||||||||| ||||| ||||||||||||    
T  9848109 gtctggttactgacgtattggactcatccctcgatctgagttcttacg 9848156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 18482169 - 18482107
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtct 348  Q
    |||||| ||||| |||||  |||| |||||||||||||| ||||| |||||||||||| ||||    
T  18482169 acccgagagagtttggttattaacatattggactcatccctcgatctgagttcttacgcgtct 18482107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 351
Target Start/End: Original strand, 24404998 - 24405094
Alignment:
Q  255 gtttaaaaccccgaaagggtctgttatgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacgtgtctgtt 351  Q
    |||| ||| |||| ||||||||||| |||| ||||||||| || |||||  ||||||||||||||||||  |||||   |||||||||| |||||||    
T  24404998 gtttcaaaacccggaagggtctgttttgttaacccgaaagggtttggttattaacgtattggactcatctctcgatcatagttcttacgcgtctgtt 24405094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 28421122 - 28421157
Alignment:
Q  308 acgtattggactcatccttcgatttgagttcttacg 343  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28421122 acgtattggactcatccctcgatttgagttcttacg 28421157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 3153900 - 3153961
Alignment:
Q  281 tgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttac 342  Q
    |||| ||| |||||||||||||| |||||||||| ||||||| ||| ||| | |||||||||    
T  3153900 tgttaacctgaaagagtctggttactaacgtatttgactcattctttgatctaagttcttac 3153961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 47005899 - 47005842
Alignment:
Q  286 acccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    |||| |||| |||||||| || ||||||||||||||||| ||||| | ||||||||||    
T  47005899 acccaaaagggtctggttactgacgtattggactcatccctcgatcttagttcttacg 47005842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 353319 - 353239
Alignment:
Q  264 cccgaaagggtctgtta-tgtttacccgaaagagtctggttgctaacgtattggactcatccttcgatttgagttcttacg 343  Q
    |||||||||||||| |  |||| || |||||| |||||||| || || |||||||||||||| ||||| ||||||||||||    
T  353319 cccgaaagggtctggtcctgttaactcgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacg 353239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University