View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12329_high_5 (Length: 308)
Name: NF12329_high_5
Description: NF12329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12329_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 11657123 - 11657371
Alignment:
| Q |
1 |
taatgatatccgttcatttaaattggtagaatatatagattgatnnnnnnnnncaacacaaaaatggatgaatttgtgattaaactcgtaacattcaagc |
100 |
Q |
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| T |
11657123 |
taatgatatccgttcattcaaattggtagaatatatagattgatcaagaa---caacacgaaaatggatgaatttgtgattaaacttataacattcaagc |
11657219 |
T |
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| Q |
101 |
taataactttctattaatagtcataaatgacacaattattacatagatttttaaatatggcagccaactattgatttgaacannnnnnnaattttaatat |
200 |
Q |
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| T |
11657220 |
taataactttctattcaaactcatagatgacacaattattacatagctttttaaatatgacagccaactattgatttgaaca--tttttatttgtaatat |
11657317 |
T |
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| Q |
201 |
actcttagaacattggagccaattgttccatggaagtttttgcaaaagacatta |
254 |
Q |
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| T |
11657318 |
actcttagaacattggagccaattgttccatggaagtttttgcaaaagacatta |
11657371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 32926662 - 32926610
Alignment:
| Q |
196 |
aatatactcttagaacattggagccaattgttccatggaagtttttgcaaaag |
248 |
Q |
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|||| |||||| ||| | ||||||||||||||||||| ||||||||||||||| |
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| T |
32926662 |
aatagactcttggaatagtggagccaattgttccatgaaagtttttgcaaaag |
32926610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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