View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12329_high_6 (Length: 253)
Name: NF12329_high_6
Description: NF12329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12329_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 41514667 - 41514844
Alignment:
| Q |
1 |
attgtatttctattttattttacattgtaaagtgtatataatataaccatatgtaaatgacaaattaattattttcttatgtggcaccatgtcagcaaaa |
100 |
Q |
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| T |
41514667 |
attgtatttctattttattttacattgtaaagtttatataatataaccatatgtaaatgacaaattaattattttcttatgtggcaccatgtcagcaaaa |
41514766 |
T |
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| Q |
101 |
aatgcccacgtgacaatagcatgagactagaaagtgtaaactaaaaaatttagaatgacgcaaagttttatagaagtt |
178 |
Q |
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| T |
41514767 |
aatgcccacgtgacaatagcatgagactagaaagtgtaaactaaaaaatttagaatgacgcaaagttttatagaagtt |
41514844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 41533125 - 41533218
Alignment:
| Q |
86 |
accatgtcagcaaaaaatgcccacgtgacaatagcatgagactagaaagt-gtaaactaaaaaatttagaatgacgcaaagttttatagaagtt |
178 |
Q |
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| T |
41533125 |
accatgtcagcaaaaaatgcccacgtgacaatagcatgagactagaaagtggtaaactaaaaaatttagaatgacgcaaagttttatagaagtt |
41533218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 41514876 - 41514905
Alignment:
| Q |
210 |
catgttgaacctttaaatttacaataaaat |
239 |
Q |
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| T |
41514876 |
catgttgaacctttaaatttacaataaaat |
41514905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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