View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12329_low_2 (Length: 430)
Name: NF12329_low_2
Description: NF12329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12329_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 7724252 - 7723851
Alignment:
| Q |
18 |
tgttatacatctaactgaaagagaaagttaattaaagtagtcgatnnnnnnnnnnnngacaaactaagaatatagaattatctcacattctcactccacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7724252 |
tgttatacatctaactgaaagagaaagttaattaaagtagtcgataaaaaataaaaagacaaactaagaatatagaattatctcacattctcactccatc |
7724153 |
T |
|
| Q |
118 |
aaaggaagcaaataaaatgcnnnnnnnnnnnnnnn---catcatgtgacgataccatagaaccatcgcaatcaaaaacatcttctacatatcattatcat |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7724152 |
aaaggaagcaaataaaatgaaaaaaaaaaaaaaaaaaacatcatgtgacgataccatagaaccatcgcaatcaaaaacatcttctacatatcattatcat |
7724053 |
T |
|
| Q |
215 |
tggtcttgaccgtcctagctgctttactaaatctattactattttaacattattattaatatttttcatgaacgaggcttgttctatcagagtctccaag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7724052 |
tggtcttgaccgtcctagctgctttactaaatctattactattataacattattattaatatttttcatgaacgaggcttgttctatcagagtctccaag |
7723953 |
T |
|
| Q |
315 |
agagaaatggaatgccattttcagaatcatgattggtttcatcaatgaaacggaactcgttagtcattgctggagagaaacactgcatcttctggttctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7723952 |
agagaaatggaatgccattttcagaatcatgattggtttcatcaatgaaacggaactcgttagtaattgccggagagaaacactgcatcttctggttctg |
7723853 |
T |
|
| Q |
415 |
tg |
416 |
Q |
| |
|
|| |
|
|
| T |
7723852 |
tg |
7723851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University