View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12329_low_4 (Length: 374)
Name: NF12329_low_4
Description: NF12329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12329_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 19278244 - 19278600
Alignment:
| Q |
1 |
gttatcttcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19278244 |
gttatcttcaccagtgatcccatgaatgtgcaccacatcatcagcaagaatttcagtaactatgggaaaggatctgacttccatgagatttttgaagttc |
19278343 |
T |
|
| Q |
101 |
ttggtcttggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatca |
200 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19278344 |
tcggtcttggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatca |
19278443 |
T |
|
| Q |
201 |
acaaaacattcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19278444 |
acaaaacattcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagagg |
19278543 |
T |
|
| Q |
301 |
tttacctttgatattacttgcannnnnnnatttggattcgatcctaattcccttcct |
357 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19278544 |
tttacctttgatattacttgcatttttttatttggattcgatcctaattcccttcct |
19278600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 357
Target Start/End: Original strand, 13243622 - 13243977
Alignment:
| Q |
2 |
ttatcttcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttct |
101 |
Q |
| |
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||||| |||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||| ||| |||| |
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| T |
13243622 |
ttatcatcactagtgatcccatgaatgtgaaccacatcctcagcaaaaaattcagtaactatgggaaaggatctgatttccttgagatttttgaaattct |
13243721 |
T |
|
| Q |
102 |
tggtcttggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaa |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
13243722 |
cggtgttggtattttcaatttggattccaaggaatgggaacaagaaagggcactacttcattcattgctcaaaaccaaaaactttgagatattctatcaa |
13243821 |
T |
|
| Q |
202 |
caaaacattcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagt |
301 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || |
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| T |
13243822 |
caaaacattcaaaagaaactagagaattgcctattaccatttcttgatcatgcatccaaagaagtaaaagtacttgatttacaagatgttcttgagaggt |
13243921 |
T |
|
| Q |
302 |
ttacctttgatattacttgcannnnnnnatttggattcgatcctaattcccttcct |
357 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||||| ||||||| |
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|
| T |
13243922 |
ttacctttgatatttcttgcacttttttttttggattcgatcctaattgccttcct |
13243977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 13079969 - 13080318
Alignment:
| Q |
8 |
tcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||| | |
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|
| T |
13079969 |
tcaccagtgatcccatgaatgtgcaccacatcactagcaagaatttcagcaactatggaaaaggatctgacttccatgaaatttttgaaattcttggtgt |
13080068 |
T |
|
| Q |
108 |
tggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaaaac |
207 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| || ||| | ||||||||||||||||||| |||| | |||||||| || ||| ||| | |
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| T |
13080069 |
tggtattttcaatttagattctaatgaatggaaacaagagagagcattgtttcattcattgctcaaaaggaaaagctttgagatactccttcatcaatgc |
13080168 |
T |
|
| Q |
208 |
attcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacct |
307 |
Q |
| |
|
||| ||| ||| |||||| || | |||||||||||||||||||||||||||| |||| || ||||||||||||||| || |||||| ||| |||| |
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| T |
13080169 |
attagaaataagttagagattttcctattaccatttcttgatcatgcatccaaaggagtacaaatacttgatttacaagatattcttgagaggttcacct |
13080268 |
T |
|
| Q |
308 |
ttgatattacttgcannnnnnnatttggattcgatcctaattcccttcct |
357 |
Q |
| |
|
|||| |||| ||||| ||||||||| |||||||||| ||||||| |
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| T |
13080269 |
ttgacattatttgcacttctgtatttggatttgatcctaattgccttcct |
13080318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 322
Target Start/End: Complemental strand, 13087231 - 13086911
Alignment:
| Q |
2 |
ttatcttcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttct |
101 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||| ||||||||||| || ||||||||||||||| |||| |||||||| ||||| || ||| | |
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|
| T |
13087231 |
ttatcctcaccagtgatcatttgaatgtgcatcacatcactagcaagaattttagcaactatgggaaaggaactgatttccatgaaatttttgatgtttt |
13087132 |
T |
|
| Q |
102 |
tggtcttggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaa |
201 |
Q |
| |
|
||| |||||||||| |||||||||| | | |||||||||||||| ||| ||||| ||||||||||||||||| |||| ||||||||| || |||| |
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|
| T |
13087131 |
aggtgttggtattttaaatttggatttcgaagaatggaaacaagagaggacactacttcattcattgctcaaagggaaaagttttgagatatcctttcaa |
13087032 |
T |
|
| Q |
202 |
caaaacattcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||| | | ||||||||||||||| || |||||| || |
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|
| T |
13087031 |
caaaacattcaaaagaagctagagaatttcctattacgatttcttgatcatgcatccaaaagtgtacaggtacttgatttacaagatattcttgagaggt |
13086932 |
T |
|
| Q |
302 |
ttacctttgatattacttgca |
322 |
Q |
| |
|
|||||||||||||||| |||| |
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|
| T |
13086931 |
ttacctttgatattacatgca |
13086911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 12962994 - 12963300
Alignment:
| Q |
8 |
tcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||| ||||||||| |||| ||| || || |||||||||||| | |
|
|
| T |
12962994 |
tcaccagtgatcccatgaatgtgcaccatatcactagcaagaatttcagcaattatgggagaggatctgatttccctgaaatctttgaagttcttggtat |
12963093 |
T |
|
| Q |
108 |
tggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaaaac |
207 |
Q |
| |
|
| || || | ||||||||||||||||| ||||||||||| ||| || || |||||||||||||||||| |||| || ||| || | |||||||| | |
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|
| T |
12963094 |
tagtcttataaatttggattccaatgattggaaacaagagaggacaatacttcattcattgctcaaaaggaaaagttttaagacatcccttcaacaaatc |
12963193 |
T |
|
| Q |
208 |
attcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacct |
307 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||||||||||| | |||| || ||| || |||||||||||| || |||||| ||| |||| |
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|
| T |
12963194 |
attcaaaagaagctagagagttgtctattaccatttcttgatcatgcaacaaaaggtttacaagtactcgatttacaagatattcttgagaggttcacct |
12963293 |
T |
|
| Q |
308 |
ttgatat |
314 |
Q |
| |
|
| ||||| |
|
|
| T |
12963294 |
tcgatat |
12963300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 13272698 - 13272346
Alignment:
| Q |
14 |
gtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtcttggtat |
113 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||| || ||||||||||||||||| |||| ||| |||| || ||||||||| || |||| |
|
|
| T |
13272698 |
gtgatcccatgaatgtgcatcacattaccagcaaaaatttcagcaattatgggaaaggatctgatttccctgaaatttgtgacgttcttggtgttagtat |
13272599 |
T |
|
| Q |
114 |
tttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaac-attgagatattctatcaacaaaacattca |
212 |
Q |
| |
|
| | ||| ||||||||||||||||||| ||||||||| | | ||||||||||||| ||| ||||||| |||||| || | || |||||||||||| |
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|
| T |
13272598 |
tgtaaatctggattccaatgaatggaagcaagaaaggactattcttcattcattgct-taaagcaaaaacttttgagacatcccttcgacaaaacattca |
13272500 |
T |
|
| Q |
213 |
aaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacctttgat |
312 |
Q |
| |
|
|||||| ||||| | |||| | ||||||||||||||||||||||| |||| ||| | | ||||||||||||||| ||||||||| ||| ||||||||| |
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|
| T |
13272499 |
aaagaaactagaaagttgtctattaccatttcttgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgagaggttcacctttgat |
13272400 |
T |
|
| Q |
313 |
attacttgcannnnnnnatttggattcgatcctaattcccttcctcacaggttc |
366 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| |||||| ||| |||| |
|
|
| T |
13272399 |
attacttgtaattttttatttggatttgatcctaattgtcttccttacaagttc |
13272346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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