View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12329_low_7 (Length: 241)

Name: NF12329_low_7
Description: NF12329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12329_low_7
NF12329_low_7
[»] chr7 (9 HSPs)
chr7 (1-241)||(41514191-41514431)
chr7 (12-148)||(17883306-17883451)
chr7 (76-155)||(26402768-26402847)
chr7 (12-149)||(5248625-5248771)
chr7 (96-151)||(47405220-47405275)
chr7 (12-80)||(6388023-6388091)
chr7 (14-80)||(33899806-33899872)
chr7 (76-149)||(26804011-26804084)
chr7 (12-80)||(44319925-44319993)
[»] chr1 (13 HSPs)
chr1 (9-173)||(45925457-45925631)
chr1 (11-173)||(3483007-3483178)
chr1 (20-149)||(30494034-30494173)
chr1 (45-149)||(698818-698931)
chr1 (12-149)||(43492120-43492267)
chr1 (85-173)||(44958275-44958363)
chr1 (85-149)||(25670763-25670827)
chr1 (85-177)||(31822438-31822530)
chr1 (12-80)||(14758527-14758595)
chr1 (101-149)||(49003715-49003763)
chr1 (85-148)||(5224874-5224937)
chr1 (38-80)||(30076930-30076972)
chr1 (116-173)||(30529435-30529492)
[»] chr5 (13 HSPs)
chr5 (12-173)||(591192-591362)
chr5 (76-177)||(42265477-42265578)
chr5 (74-144)||(39046974-39047044)
chr5 (85-149)||(40872290-40872354)
chr5 (74-149)||(27146911-27146986)
chr5 (74-175)||(13978599-13978699)
chr5 (85-149)||(23129392-23129456)
chr5 (85-149)||(41520715-41520779)
chr5 (74-122)||(8415729-8415777)
chr5 (36-80)||(36486903-36486947)
chr5 (85-147)||(40458988-40459050)
chr5 (39-80)||(27146867-27146908)
chr5 (15-80)||(39046907-39046971)
[»] chr4 (19 HSPs)
chr4 (17-151)||(20787367-20787509)
chr4 (12-148)||(5047172-5047317)
chr4 (85-173)||(46521554-46521642)
chr4 (85-149)||(54495531-54495595)
chr4 (76-149)||(24753969-24754042)
chr4 (76-176)||(25751666-25751766)
chr4 (85-147)||(20180217-20180279)
chr4 (76-173)||(10042887-10042984)
chr4 (40-80)||(33266890-33266930)
chr4 (13-125)||(34124534-34124654)
chr4 (97-151)||(21988452-21988506)
chr4 (11-144)||(28695733-28695875)
chr4 (76-141)||(46088516-46088581)
chr4 (12-80)||(23135503-23135571)
chr4 (76-123)||(41690167-41690214)
chr4 (76-149)||(5091835-5091907)
chr4 (39-80)||(8607677-8607718)
chr4 (39-80)||(21988533-21988574)
chr4 (12-80)||(20176634-20176702)
[»] chr3 (8 HSPs)
chr3 (14-149)||(11465617-11465761)
chr3 (20-178)||(53641637-53641804)
chr3 (84-148)||(53605703-53605767)
chr3 (33-149)||(4275199-4275324)
chr3 (76-149)||(30364044-30364116)
chr3 (17-173)||(32734654-32734819)
chr3 (85-122)||(54911251-54911288)
chr3 (36-80)||(23554743-23554787)
[»] chr8 (7 HSPs)
chr8 (12-173)||(44254096-44254265)
chr8 (17-149)||(38236249-38236382)
chr8 (39-144)||(34336470-34336584)
chr8 (14-149)||(33649978-33650122)
chr8 (84-135)||(9774796-9774847)
chr8 (11-72)||(37231416-37231477)
chr8 (12-80)||(20142509-20142577)
[»] chr2 (6 HSPs)
chr2 (10-151)||(18375028-18375178)
chr2 (76-155)||(27501721-27501800)
chr2 (15-152)||(63856-63999)
chr2 (12-80)||(32493143-32493210)
chr2 (74-122)||(3666457-3666505)
chr2 (57-132)||(2796536-2796611)
[»] chr6 (5 HSPs)
chr6 (21-80)||(17124622-17124681)
chr6 (84-151)||(24797462-24797529)
chr6 (92-149)||(9975044-9975101)
chr6 (12-80)||(29407971-29408039)
chr6 (74-149)||(10345986-10346061)
[»] scaffold0018 (1 HSPs)
scaffold0018 (20-80)||(48755-48815)
[»] scaffold0019 (1 HSPs)
scaffold0019 (74-111)||(67446-67483)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 41514431 - 41514191
Alignment:
Q  1 aatagatatttgggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaattttaattttcaatacattg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41514431 aatagatatttgagtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaattttaattttcaatacattg 41514332  T
Q  101 atttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattttcctagatatttatcaccaaggagatt 200  Q
    ||||||||||||||||  |||| || ||||||||| ||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  41514331 atttcataaactttgactaaaacttactatttaaagttactaaacaatgtcctaaaagcacttgttaacattttactagatatttatcaccaaggagatt 41514232  T
Q  201 gagggagggagtatttcaatatatgcgttgttgtctctgct 241  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  41514231 gagggagggagtatttcaatatatgcgttgttgtctatgct 41514191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 17883451 - 17883306
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattcttt---------aaaaattttaattttcaatacattgat 102  Q
    |||||| |||||| |||||| ||||| ||||| |||| |||||||||||||||||||||| |||         ||||| |||||||| |||  |||||||    
T  17883451 gggtctagttaacgagtgtcctaagggcactctttaaggatttttaataaagaaattattttttaaaaaagtcaaaaactttaatttccaacgcattgat 17883352  T
Q  103 ttcataaactttgataaaaatttgctatttaaaattactaaacaat 148  Q
    |||||||| ||||| ||||| || ||||||||| ||||||||||||    
T  17883351 ttcataaattttgacaaaaacttactatttaaagttactaaacaat 17883306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 26402847 - 26402768
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaa 155  Q
    ||||| || |||||||||||||||||||||||||| ||||| ||||| || ||||||||| ||||||||||||| |||||    
T  26402847 aaaaacttcaattttcaatacattgatttcataaattttgacaaaaacttactatttaaagttactaaacaatgccttaa 26402768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 5248771 - 5248625
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaattttaa---------ttttcaatacattgat 102  Q
    ||||||||||||| ||   | ||||| ||||| |||| ||||  |||||||||||||||||||||||||| ||||         ||| |||| |||||||    
T  5248771 gggtcttgttaacgagccccttaagggcactctttaaggattcctaataaagaaattattctttaaaaatgttaaaaactccaatttccaatgcattgat 5248672  T
Q  103 ttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||||||||||||| ||||| || ||||||||| |||||||||||||    
T  5248671 ttcataaactttgacaaaaacttactatttaaagttactaaacaatg 5248625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 47405275 - 47405220
Alignment:
Q  96 cattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtc 151  Q
    ||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||    
T  47405275 cattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgtc 47405220  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 6388091 - 6388023
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    |||||||||||||||||| | | | ||||||| |||| ||||  |||||||||||||||||||||||||    
T  6388091 gggtcttgttaacaagtgcctttaagacactctttaaggattcataataaagaaattattctttaaaaa 6388023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 33899872 - 33899806
Alignment:
Q  14 gtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||| |||||  ||||| ||||| |||||||||  ||||||||||||||||| |||||||    
T  33899872 gtcttgttaacgagtgtagtaagggcactctttaaagattcctaataaagaaattattccttaaaaa 33899806  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 26804084 - 26804011
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||| || ||||| |||| ||||||||| ||||||||||| ||||| || ||||||||| ||| |||||||||    
T  26804084 aaaaacttcaatttccaatgcattgattttataaactttgacaaaaacttactatttaaagttattaaacaatg 26804011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 44319993 - 44319925
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||||| |||||| ||||||||||| |||| |  ||| ||| ||||||||||| ||| ||||    
T  44319993 gggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaa 44319925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 45925457 - 45925631
Alignment:
Q  9 tttgggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaa-ttattctttaaaaa---------ttttaattttcaatacat 98  Q
    |||||||||||||||| |||||| ||||||||||| |||| |||| |||||||||||| ||||||||||||||         ||  ||||| ||||||||    
T  45925457 tttgggtcttgttaacgagtgtcctaaggacactctttaaggattcttaataaagaaaattattctttaaaaaagtcaaaaattcaaatttccaatacat 45925556  T
Q  99 tgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    |||||||||||||||||| ||||| || ||||||||| |||||||||||||| |||| |  ||||||||||||||    
T  45925557 tgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgttttaagaacactcgttaacattt 45925631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 3483007 - 3483178
Alignment:
Q  11 tgggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaattttaa---------ttttcaatacattga 101  Q
    |||||||| ||||| |||||||||||| | ||| |||| ||||| |||||||||||||||||||||||||  | ||         |||||||| ||| ||    
T  3483007 tgggtcttattaacgagtgtcataagggcgctctttaaggatttctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcatcga 3483106  T
Q  102 tttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    ||||||||||||||| ||||| || ||||||||| ||||||||||||| | |||  ||||| ||||||||||    
T  3483107 tttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagggtacttgttaacattt 3483178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 30494034 - 30494173
Alignment:
Q  20 ttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaat---------tttaattttcaatacattgatttcataaa 110  Q
    ||||||||||   ||| ||||||| |||||||||||||||||||| |||||||||||||||          |||||||| |||||||||||||||||||     
T  30494034 ttaacaagtgctctaaagacactctttaaagatttttaataaagagattattctttaaaaaagtaaaaaactttaatttccaatacattgatttcataat 30494133  T
Q  111 ctttgataaaaatttgctatttaaaa-ttactaaacaatg 149  Q
    |||| | ||||| || |||||||||| |||||||||||||    
T  30494134 ctttaacaaaaacttactatttaaaatttactaaacaatg 30494173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 698931 - 698818
Alignment:
Q  45 ttaaagatttttaataaagaaattattctttaaaaattttaa---------ttttcaatacattgatttcataaactttgataaaaatttgctatttaaa 135  Q
    |||| ||||||||||||||||||||||| |||||||  ||||         ||| |||| ||||||||||||||||||||||||||| || |||||||||    
T  698931 ttaaggatttttaataaagaaattattcattaaaaaagttaaaaactcaaatttccaatgcattgatttcataaactttgataaaaacttactatttaaa 698832  T
Q  136 attactaaacaatg 149  Q
     |||||||||||||    
T  698831 gttactaaacaatg 698818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 43492267 - 43492120
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaat----------tttaattttcaatacattga 101  Q
    ||||||||||||| |||| | ||||| ||||| |||| ||||  |||||||||||||||| ||||||||           || ||||| |||| ||||||    
T  43492267 gggtcttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattttttaaaaaaagtcaaaaacttcaatttccaatgcattga 43492168  T
Q  102 tttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  43492167 tttcataaactttgacaaaaatttactatttaaagttactaagcaatg 43492120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 44958363 - 44958275
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    |||||||||| ||||||||||||||||||| | |||||||| ||||||||| |||||||||||| || ||| |  ||| ||||||||||    
T  44958363 aattttcaatgcattgatttcataaactttaacaaaaatttactatttaaagttactaaacaatatcctaagaccacttgttaacattt 44958275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 25670827 - 25670763
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||||||||| ||||||||||||||||||| | ||||| || ||||||||| |||||||||||||    
T  25670827 aattttcaatgcattgatttcataaactttaacaaaaacttactatttaaagttactaaacaatg 25670763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 31822438 - 31822530
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattttcct 177  Q
    |||||| ||| ||||||||| ||||||||||| ||||  || |||| |||| ||||||||||||||| |||  ||||| ||||||||||||||    
T  31822438 aatttttaatgcattgattttataaactttgacaaaagcttactatctaaagttactaaacaatgtcgtaagggtacttgttaacattttcct 31822530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 14758527 - 14758595
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||||| |||||| ||||| ||||| |||||| |||  ||| |||||||||||| |||||||    
T  14758527 gggtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattattccttaaaaa 14758595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 49003715 - 49003763
Alignment:
Q  101 atttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||||||||||||||| |||||||| ||||||||| ||| |||||||||    
T  49003715 atttcataaactttgacaaaaatttactatttaaagttattaaacaatg 49003763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 5224937 - 5224874
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaat 148  Q
    ||||| |||| ||||||||| ||||||||| | ||||| || ||||||||||||| ||||||||    
T  5224937 aatttgcaatgcattgattttataaactttaacaaaaacttactatttaaaattattaaacaat 5224874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 30076972 - 30076930
Alignment:
Q  38 acactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    |||||||||||| | ||||||||||||||| ||||||||||||    
T  30076972 acactcattaaaaaattttaataaagaaataattctttaaaaa 30076930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 30529435 - 30529492
Alignment:
Q  116 ataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    |||||||||| ||||||||| |   |||| ||||||||||||| ||||||||||||||    
T  30529435 ataaaaatttactatttaaagtccttaaagaatgtcttaaaagcactcgttaacattt 30529492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 591362 - 591192
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaat---------tttaattttcaatacattgat 102  Q
    ||||||||||||| |||| | ||| ||||||| |||| ||||| |||||||||||||||||||||||||          || ||||| |||| |||||||    
T  591362 gggtcttgttaacgagtgccctaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaacttcaatttccaatgcattgat 591263  T
Q  103 ttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    |||||||||||||| ||||| || ||||||||| ||||||||||||| | ||| || ||| ||||||||||    
T  591262 ttcataaactttgacaaaaacttactatttaaagttactaaacaatgccctaagagcacttgttaacattt 591192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 42265477 - 42265578
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattttc 175  Q
    |||||||| |||||||||| |||||||||||||||||| || ||||| || |||| |||| ||||||||||||||| |||  | ||| ||||||||||||    
T  42265477 aaaaatttcaattttcaatgcattgatttcataaacttagacaaaaacttactatataaagttactaaacaatgtcctaagggcacttgttaacattttc 42265576  T
Q  176 ct 177  Q
    ||    
T  42265577 ct 42265578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 39046974 - 39047044
Alignment:
Q  74 ttaaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaa 144  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||  ||||||||| ||||||||    
T  39046974 ttaaaaactttaattttcaatgcattgatttcataaactttgagaaaaattaactatttaaagttactaaa 39047044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 40872290 - 40872354
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||| |||| ||||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  40872290 aatttccaatgcattgatttcataaactttgataaaaacttactatttaaagttactaaacaatg 40872354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 27146911 - 27146986
Alignment:
Q  74 ttaaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||||| | |||||| |||| ||||||||||||||||||||| ||||| || ||||||||| |||||||||||||    
T  27146911 ttaaaaactctaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatg 27146986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 13978699 - 13978599
Alignment:
Q  74 ttaaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    ||||||| || ||||| |||| |||||||||||||||||||||  |||| || ||||||||||||| ||||||||||  |||| | ||| ||||||||||    
T  13978699 ttaaaaacttcaatttccaatgcattgatttcataaactttga-caaaacttactatttaaaattattaaacaatgttctaaatgcacttgttaacattt 13978601  T
Q  174 tc 175  Q
    ||    
T  13978600 tc 13978599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 23129392 - 23129456
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||| |||| ||||||||||||||||||||| ||||| || ||||||||| |||||||||||||    
T  23129392 aatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatg 23129456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 41520715 - 41520779
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||| |||| ||||||||| ||||||||||||||||| || ||||||||| ||| |||||||||    
T  41520715 aatttccaatgcattgattttataaactttgataaaaacttactatttaaagttattaaacaatg 41520779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 8415729 - 8415777
Alignment:
Q  74 ttaaaaattttaattttcaatacattgatttcataaactttgataaaaa 122  Q
    ||||||| || ||||| |||||||||||||||||||||||||| |||||    
T  8415729 ttaaaaacttcaatttccaatacattgatttcataaactttgacaaaaa 8415777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 36486903 - 36486947
Alignment:
Q  36 ggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||    
T  36486903 ggacactctttaagcatttttaataaagaaattattctttaaaaa 36486947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 40458988 - 40459050
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaa 147  Q
    ||||| |||| ||||||||||||||||||||| ||||| || || |||||| ||| |||||||    
T  40458988 aatttccaatgcattgatttcataaactttgacaaaaacttactctttaaagttattaaacaa 40459050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 27146867 - 27146908
Alignment:
Q  39 cactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||| |||| ||||| |||||||||||||||||||||||||    
T  27146867 cactctttaaggatttctaataaagaaattattctttaaaaa 27146908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 39046907 - 39046971
Alignment:
Q  15 tcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    |||||||||| ||| || ||| ||||||| |||| |||| |||||||| |||||||||||||||||    
T  39046907 tcttgttaacgagtatcctaatgacactctttaaggattcttaataaa-aaattattctttaaaaa 39046971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 20787367 - 20787509
Alignment:
Q  17 ttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaatt--------ttaattttcaatacattgatttcata 108  Q
    |||||||| |||||| ||| | ||||| |||| ||||||||||||| |||||||| |||||||| |        | ||||||||||||||||||||||||    
T  20787367 ttgttaacgagtgtcctaaaggcactctttaaggatttttaataaaaaaattattttttaaaaagtcaaaaacttcaattttcaatacattgatttcata 20787466  T
Q  109 aactttgataaaaatttgctatttaaaattactaaacaatgtc 151  Q
    |||||||| |||| ||| | ||||||||| |||||||||||||    
T  20787467 aactttgacaaaattttaccatttaaaatcactaaacaatgtc 20787509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 5047172 - 5047317
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattcttta---------aaaattttaattttcaatacattgat 102  Q
    |||| |||||||| |||| | ||||| |||||||||| ||||| ||||||||||||||||| |||         ||||||| ||||| |||| |||||||    
T  5047172 gggttttgttaacgagtgccctaagggcactcattaaggatttctaataaagaaattattcattacaaaagtcaaaaatttcaatttccaatgcattgat 5047271  T
Q  103 ttcataaactttgataaaaatttgctatttaaaattactaaacaat 148  Q
    |||||||||||| | ||||| || ||||||||| ||||||||||||    
T  5047272 ttcataaactttaaaaaaaacttactatttaaagttactaaacaat 5047317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 46521554 - 46521642
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    |||||| ||| ||||||||||||||||||| | ||||||||  |||||||| | |||||||||||||||||||| ||| ||||||||||    
T  46521554 aatttttaatgcattgatttcataaactttaacaaaaatttattatttaaagtcactaaacaatgtcttaaaagcacttgttaacattt 46521642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 54495531 - 54495595
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  54495531 aattttcaatgcattgatttcataaactttgataaaaacttactatttaaagttactaaacaatg 54495595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 24753969 - 24754042
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||| |||||||| |||| ||||||||||||||||||| |||||||||| ||||||||| || ||||||||||    
T  24753969 aaaaactttaatttccaatgcattgatttcataaactttcataaaaatttactatttaaagtttctaaacaatg 24754042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 25751766 - 25751666
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattttc 175  Q
    ||||| ||||||||||||| |||| ||| ||||| |||| ||||||| || ||||||||| ||| ||||||||||||||| ||||| | |||| ||||||    
T  25751766 aaaaaatttaattttcaatgcattaattgcataagctttaataaaaacttactatttaaagttattaaacaatgtcttaagagtacccattaatattttc 25751667  T
Q  176 c 176  Q
    |    
T  25751666 c 25751666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 20180279 - 20180217
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaa 147  Q
    |||||||||| |||| |||||||||||||||| |||||||| ||||||||| || ||||||||    
T  20180279 aattttcaatgcattaatttcataaactttgacaaaaatttactatttaaagttcctaaacaa 20180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 10042887 - 10042984
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    ||||| || ||| |||||| ||||||||||||||| ||| ||||||| || ||||||||| ||| |||||||||  ||||| | ||| ||||||||||    
T  10042887 aaaaacttcaatgttcaatgcattgatttcataaattttaataaaaacttactatttaaagttattaaacaatgctttaaaggcacttgttaacattt 10042984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 33266930 - 33266890
Alignment:
Q  40 actcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  33266930 actctttaaagatttttaataaagaaattattctttaaaaa 33266890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 34124654 - 34124534
Alignment:
Q  13 ggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa--------ttttaattttcaatacattgattt 104  Q
    |||||| ||||  |||||| |||| |||||  |||| ||||| |||||||||||||||| ||||||||        ||  |||||||||| |||||||||    
T  34124654 ggtcttattaaggagtgtcctaagaacactttttaaggatttctaataaagaaattattttttaaaaaagtcaaaattacaattttcaatgcattgattt 34124555  T
Q  105 cataaactttgataaaaattt 125  Q
    |||||||||||| ||||||||    
T  34124554 cataaactttgacaaaaattt 34124534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 21988506 - 21988452
Alignment:
Q  97 attgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtc 151  Q
    |||||||||||||||||||| ||||| || ||||||||| ||| |||||||||||    
T  21988506 attgatttcataaactttgacaaaaacttactatttaaagttattaaacaatgtc 21988452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 28695733 - 28695875
Alignment:
Q  11 tgggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattcttt---------aaaaattttaattttcaatacattga 101  Q
    |||||||||||||| |||| | ||||| ||||| |||| ||||  |||||||||||||||| |||         ||||| || ||||| ||||  ||| |    
T  28695733 tgggtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaaagtcaaaaacttcaatttccaatgtattaa 28695832  T
Q  102 tttcataaactttgataaaaatttgctatttaaaattactaaa 144  Q
    ||||||||||||||| |||||||| ||||||||| ||| ||||    
T  28695833 tttcataaactttgacaaaaatttactatttaaagttattaaa 28695875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 46088581 - 46088516
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattact 141  Q
    ||||| || ||||| |||| ||||||||||||||||||||| ||||| || ||||||||| |||||    
T  46088581 aaaaacttcaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttact 46088516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 23135571 - 23135503
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||||| |||||| ||||  ||||| |||| ||||| ||||||| ||||||||| |||||||    
T  23135571 gggtcttgttaacgagtgtcctaagtgcactctttaaggatttctaataaaaaaattattccttaaaaa 23135503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 41690214 - 41690167
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaat 123  Q
    ||||||| |||||| |||| ||||||||| ||||||||||||||||||    
T  41690214 aaaaattctaatttccaatgcattgattttataaactttgataaaaat 41690167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 5091907 - 5091835
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||| || |||||||||| |||||||| |||||| ||| | ||||||||  |||||||| |||||||||||||    
T  5091907 aaaaacttcaattttcaatgcattgatt-cataaaatttaacaaaaatttattatttaaagttactaaacaatg 5091835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 8607718 - 8607677
Alignment:
Q  39 cactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||    
T  8607718 cactctttaaacattcttaataaagaaattattctttaaaaa 8607677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 21988574 - 21988533
Alignment:
Q  39 cactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||| |||||||||  |||||||||||||||||||||||||    
T  21988574 cactctttaaagattcataataaagaaattattctttaaaaa 21988533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 20176702 - 20176634
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    |||| |||||||| |||| | ||||| ||||| |||| ||||  ||||||||||||||||| |||||||    
T  20176702 gggtattgttaaccagtgccctaagggcactccttaaggattcataataaagaaattattccttaaaaa 20176634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 11465761 - 11465617
Alignment:
Q  14 gtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattcttta---------aaaattttaattttcaatacattgattt 104  Q
    ||||||||||| |||||| |||| |||||| |||| ||||||||||||| |||||||||||||         |||| || ||||||||||||| ||||||    
T  11465761 gtcttgttaacgagtgtcctaagaacactctttaaggatttttaataaaaaaattattctttaaaaaagtcaaaaacttcaattttcaatacagtgattt 11465662  T
Q  105 cataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||||||||||| ||||| || ||||||||| || ||||| ||||    
T  11465661 cataaactttgacaaaaacttactatttaaagtttctaaataatg 11465617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 53641804 - 53641637
Alignment:
Q  20 ttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaatt--------ttaattttc-aatacattgatttcataaa 110  Q
    ||||| |||| | ||||||||||| |||||||||| ||||||||||||||||||||||||| |        |||| |||| ||| |||||||||||||||    
T  53641804 ttaacgagtgccttaaggacactctttaaagatttctaataaagaaattattctttaaaaaattcaaaaacttaaatttctaatgcattgatttcataaa 53641705  T
Q  111 ctttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattttccta 178  Q
    |||||| ||||| || ||||| ||| ||| |||||||| ||||||   |||| |||||||||| ||||    
T  53641704 ctttgacaaaaacttactattcaaagttattaaacaatatcttaagtatacttgttaacatttcccta 53641637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 53605703 - 53605767
Alignment:
Q  84 taattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaat 148  Q
    |||||| |||| ||||||||| ||||||||||||||||| || ||||||||| ||||||||||||    
T  53605703 taatttccaatgcattgattttataaactttgataaaaacttactatttaaagttactaaacaat 53605767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 4275324 - 4275199
Alignment:
Q  33 taaggacactcattaaagatttttaataaagaaattattctttaaaaatttt---------aattttcaatacattgatttcataaactttgataaaaat 123  Q
    ||||| ||||| ||||||||| |||||||| |||||||||||||||||  ||         || || |||||||||||||| ||||||||||| |||||     
T  4275324 taagggcactctttaaagattcttaataaaaaaattattctttaaaaaagttaaaaactccaacttccaatacattgattttataaactttgacaaaaac 4275225  T
Q  124 ttgctatttaaaattactaaacaatg 149  Q
    ||  |||||||| ||| |||||||||    
T  4275224 ttattatttaaagttattaaacaatg 4275199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 30364116 - 30364044
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||||||| |||||||| | ||||||||||||||||||| | ||||| |||||||||||| || ||||| ||||    
T  30364116 aaaaatttcaattttca-tccattgatttcataaactttaacaaaaacttgctatttaaagttgctaaataatg 30364044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 32734654 - 32734819
Alignment:
Q  17 ttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctt---------taaaaattttaattttcaatacattgatttcat 107  Q
    |||||||| |||| | ||||| ||||| |||| ||||  |||||||||||||||||||         |||||| | |||||| |||| ||||  ||||||    
T  32734654 ttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattctttaaaaaaggtaaaaactctaatttccaatgcattagtttcat 32734753  T
Q  108 aaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    ||| ||||| ||||| || ||| ||||| |||||||| |||||| |||| ||||| || |||||||    
T  32734754 aaattttgacaaaaacttactacttaaagttactaaataatgtcctaaaggtactagtcaacattt 32734819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 54911251 - 54911288
Alignment:
Q  85 aattttcaatacattgatttcataaactttgataaaaa 122  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  54911251 aattttcaatacattgattacataaactttcataaaaa 54911288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 23554787 - 23554743
Alignment:
Q  36 ggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    |||||||| |||| |||| ||||||||||||||||| ||||||||    
T  23554787 ggacactctttaaggattcttaataaagaaattattttttaaaaa 23554743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 44254265 - 44254096
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaat---------tttaattttcaatacattgat 102  Q
    ||||||||||||| |||||| ||||| ||||| |||| ||||| ||||||||||||| ||| |||||||          || ||||| |||| |||||||    
T  44254265 gggtcttgttaacgagtgtcctaagggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcattgat 44254166  T
Q  103 ttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaaaagtactcgttaacattt 173  Q
    |||||||| ||||| ||||| || ||||||||| |||||||| ||||||||||  | ||| ||||||||||    
T  44254165 ttcataaattttgacaaaaacttactatttaaagttactaaa-aatgtcttaagggcacttgttaacattt 44254096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 38236382 - 38236249
Alignment:
Q  17 ttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaattttaat-tttcaatacattgatttcataaactttg 115  Q
    |||||||| |||||  ||||| ||||| |||  |||| ||||||||||||||||| ||||||||  | ||  ||||||| ||||||||||||||| ||||    
T  38236382 ttgttaacgagtgttctaagggcactctttacggattcttaataaagaaattattttttaaaaaagtcaaaatttcaatgcattgatttcataaattttg 38236283  T
Q  116 ataaaaatttgctatttaaaattactaaacaatg 149  Q
    | |||| ||| ||||||||| ||| |||||||||    
T  38236282 acaaaattttactatttaaagttattaaacaatg 38236249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 34336584 - 34336470
Alignment:
Q  39 cactcattaaagatttttaataaagaaattattctttaaaaat---------tttaattttcaatacattgatttcataaactttgataaaaatttgcta 129  Q
    ||||| |||| |||| ||||||||||||||||||||||||||          || ||||| |||| ||||||||||||||||||||| ||||| || |||    
T  34336584 cactctttaaggattcttaataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaacttacta 34336485  T
Q  130 tttaaaattactaaa 144  Q
    |||||| ||||||||    
T  34336484 tttaaagttactaaa 34336470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 33649978 - 33650122
Alignment:
Q  14 gtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaattt---------taattttcaatacattgattt 104  Q
    ||||||| ||| |||| | ||||||||||| ||||  |||| ||||||||||||||||||| |||||  |         |||||| |||| |||||||||    
T  33649978 gtcttgtcaacgagtgccctaaggacactctttaagaatttctaataaagaaattattcttaaaaaaagtctaaaactctaatttccaatgcattgattt 33650077  T
Q  105 cataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||| | ||||| ||||| || ||||||||| |||||||||||||    
T  33650078 catacattttgacaaaaacttactatttaaagttactaaacaatg 33650122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 9774796 - 9774847
Alignment:
Q  84 taattttcaatacattgatttcataaactttgataaaaatttgctatttaaa 135  Q
    ||||||||||| |||||||||||||| |||||| |||||||| |||||||||    
T  9774796 taattttcaatgcattgatttcataagctttgacaaaaatttactatttaaa 9774847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 37231477 - 37231416
Alignment:
Q  11 tgggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattc 72  Q
    |||||||||||||| |||| | | ||| ||||| ||||||||||  ||||||||||||||||    
T  37231477 tgggtcttgttaacgagtgcccttagggcactctttaaagatttcaaataaagaaattattc 37231416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 20142577 - 20142509
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||||| |||||| ||||||||||| |||| |  ||| ||| ||||||||||| ||| ||||    
T  20142577 gggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaa 20142509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 18375028 - 18375178
Alignment:
Q  10 ttgggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaattttaa---------ttttcaatacattg 100  Q
    ||||||||||||||| ||| || |||||  |||| |||| ||||  |||||||||||||||||||||||||  | ||         |||||||| |||||    
T  18375028 ttgggtcttgttaacgagtatcctaagggtactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattg 18375127  T
Q  101 atttcataaactttgataaaaatttgctatttaaaattactaaacaatgtc 151  Q
    |||||||||||||||| ||||| || ||||||||| | |||||||||||||    
T  18375128 atttcataaactttgacaaaaacttactatttaaagtcactaaacaatgtc 18375178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 27501800 - 27501721
Alignment:
Q  76 aaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtcttaa 155  Q
    ||||| || ||||| |||| |||| |||||||||||||||| ||||| || ||||||||| |||||||||||||||||||    
T  27501800 aaaaacttcaatttccaatgcattaatttcataaactttgacaaaaacttactatttaaagttactaaacaatgtcttaa 27501721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 63856 - 63999
Alignment:
Q  15 tcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaa---------attttaattttcaatacattgatttc 105  Q
    |||||||||| |||||| ||||| || |  ||||| | |||||||||||||||||||||||||||         ||||||||||| |||||||| |||||    
T  63856 tcttgttaacgagtgtcctaagggcattttttaaaaaattttaataaagaaattattctttaaaaaagtcaaaaattttaatttttaatacattaatttc 63955  T
Q  106 ataaactttgataaaaatttgctatttaaaattactaaacaatgtct 152  Q
    ||||| ||||| ||||| || |||   ||| ||||||||||||||||    
T  63956 ataaattttgacaaaaacttacta---aaagttactaaacaatgtct 63999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 32493210 - 32493143
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||||| | |||||||||||||||| |||| |||| |||||||| ||||||||||| |||||    
T  32493210 gggtcttgttaacgactgtcataaggacactctttaaggattcttaataaa-aaattattcttcaaaaa 32493143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 3666505 - 3666457
Alignment:
Q  74 ttaaaaattttaattttcaatacattgatttcataaactttgataaaaa 122  Q
    |||||| |||||||| |||||||||||||| |||||||||| |||||||    
T  3666505 ttaaaatttttaattctcaatacattgattacataaactttcataaaaa 3666457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 2796611 - 2796536
Alignment:
Q  57 aataaagaaattattctttaaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctattt 132  Q
    ||||||| ||||||| ||||||| ||| ||||||||||| | ||||| || ||||||| ||||||| || ||||||    
T  2796611 aataaagtaattattttttaaaattttcaattttcaatatactgattacacaaacttttataaaaaattactattt 2796536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 17124622 - 17124681
Alignment:
Q  21 taacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||| | |||||||||||||| |||||||||| || |||||||||||||||||    
T  17124622 taacaagtgtcttgaggacactcattaaggatttttaatgaaaaaattattctttaaaaa 17124681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 24797462 - 24797529
Alignment:
Q  84 taattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatgtc 151  Q
    |||||| ||||  |||||||||||||||||||| ||||| || ||||||||| |||||||||||||||    
T  24797462 taatttccaatgtattgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgtc 24797529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 9975101 - 9975044
Alignment:
Q  92 aatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    |||| |||||||||||||||||| | |||||||| ||||||||| |||||||||||||    
T  9975101 aatatattgatttcataaactttaacaaaaatttactatttaaagttactaaacaatg 9975044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 29407971 - 29408039
Alignment:
Q  12 gggtcttgttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||||||||||| |||| | ||||| ||||| |||| ||||  |||||||||||||||||||||||||    
T  29407971 gggtcttgttaacgagtgccttaagggcactctttaaggattcctaataaagaaattattctttaaaaa 29408039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 10346061 - 10345986
Alignment:
Q  74 ttaaaaattttaattttcaatacattgatttcataaactttgataaaaatttgctatttaaaattactaaacaatg 149  Q
    ||||||| || |||||||||| |||||||| |||||| | | | |||||||| ||| |||| ||||||||||||||    
T  10346061 ttaaaaacttcaattttcaatgcattgattacataaattctaacaaaaatttactaattaagattactaaacaatg 10345986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 48755 - 48815
Alignment:
Q  20 ttaacaagtgtcataaggacactcattaaagatttttaataaagaaattattctttaaaaa 80  Q
    ||||| |||||| ||||  ||||| |||| ||||| |||||||||||||||||||||||||    
T  48755 ttaacgagtgtcctaagagcactctttaatgatttctaataaagaaattattctttaaaaa 48815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 67483 - 67446
Alignment:
Q  74 ttaaaaattttaattttcaatacattgatttcataaac 111  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  67483 ttaaaaactttaattttcaatgcattgatttcataaac 67446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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