View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12330_high_5 (Length: 268)
Name: NF12330_high_5
Description: NF12330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12330_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 43143846 - 43143594
Alignment:
| Q |
1 |
gctatggctgcaagagtcatatcatcagaatatccaccatctttaagtcccgagactacaccataacgatcttgcctaaagtcatcggcatgcatctgga |
100 |
Q |
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| T |
43143846 |
gctatggctgcaagagtcatatcatcaaaatatccaccatctttaagtcccgagactacaccataacgatcttgcctaaagtcatcggcatgcatctgga |
43143747 |
T |
|
| Q |
101 |
gaaaaactaacatgttaaaattaagtttttctttaaagtgacaactaagaaaaggcaaaaggtgcttgccatcatacagcctccccacagaaagaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143746 |
gaaaaactaacatgttaaaattaagtttttctttaaagtgacaactaagaaaaggcaaaaggtgcttgccatcatacagcctccccacagaaagaatgtt |
43143647 |
T |
|
| Q |
201 |
cttccactagtgtcaaagcccatcgaacaaggctatataataaaacccttttt |
253 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43143646 |
cttccactagtgtcaaagcccatcgaacaaggctgtacaataaaacccttttt |
43143594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 43155952 - 43155707
Alignment:
| Q |
1 |
gctatggctgcaagagtcatatcatcagaatatccaccatctttaagtcccgagactacaccataacgatcttgcctaaagtcatcggcatgcatctgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43155952 |
gctatggctgcaagagtcatatcatcagaatatccaccatctttaagtcccgagactacaccataacgatcttgcctaaagtcatcggcatgcatctgga |
43155853 |
T |
|
| Q |
101 |
gaaaaactaacatgttaaaattaagtttttctttaaagtgacaactaagaaaaggcaaaaggtgcttgccatcatacagcctccccacagaaagaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
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| T |
43155852 |
gaaaaactaacatgttaaaattaagtttttctttaaagcgacaactaagaaaaggcaaaagctacttgccatcatacagcctccccaaagaaagaatgtt |
43155753 |
T |
|
| Q |
201 |
cttccactagtgtcaaagcccatcgaacaaggctatataataaaac |
246 |
Q |
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||||||| |||| |||||||||||||||| |||| ||||||||||| |
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| T |
43155752 |
cttccaccagtggcaaagcccatcgaacagggctgtataataaaac |
43155707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33833649 - 33833754
Alignment:
| Q |
1 |
gctatggctgcaagagtcatatcatcagaatatccaccatctttaagtcccgagactacaccataacgatcttgcctaaagtcatcggcatgcatctgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||| || ||||||||||||||| || |||||||||| | |
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| T |
33833649 |
gctatggctgcaagagtcatatcatcagaatatccaccattttgaagttctgagactacaccacaattatcttgcctaaagtcttcagcatgcatcttta |
33833748 |
T |
|
| Q |
101 |
gaaaaa |
106 |
Q |
| |
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|||||| |
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| T |
33833749 |
gaaaaa |
33833754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 33833817 - 33833886
Alignment:
| Q |
165 |
cttgccatcatacagcctccccacagaaagaatgttcttccactagtgtcaaagcccatcgaacaaggct |
234 |
Q |
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||||||||||| || |||||||||| |||||| ||| |||||| |||| |||| || || |||||||||| |
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| T |
33833817 |
cttgccatcatgcaacctccccacaaaaagaaggtttttccaccagtggcaaatcctattgaacaaggct |
33833886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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