View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12330_low_4 (Length: 276)

Name: NF12330_low_4
Description: NF12330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12330_low_4
NF12330_low_4
[»] chr4 (6 HSPs)
chr4 (7-257)||(25189391-25189639)
chr4 (132-215)||(25160357-25160440)
chr4 (131-187)||(25039025-25039081)
chr4 (114-193)||(25168899-25168978)
chr4 (131-187)||(25017872-25017928)
chr4 (114-214)||(25180567-25180667)
[»] chr3 (1 HSPs)
chr3 (109-210)||(9213385-9213486)
[»] chr2 (3 HSPs)
chr2 (131-216)||(42157012-42157097)
chr2 (131-216)||(42290323-42290408)
chr2 (131-201)||(42167510-42167580)
[»] chr5 (1 HSPs)
chr5 (122-184)||(30360639-30360701)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 25189391 - 25189639
Alignment:
Q  7 gaagcagagatcagcatagtctcgaaaatcatttctaaaacattaaccaaattataatcatctacacgttgaatcgctatgttaggcaaatgatatttga 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25189391 gaagcaaagatcagcatagtctcgaaaatcatttctaaaacattaaccaaattataatcatctacacgttgaatcgcaatgttaggcaaatgatatttga 25189490  T
Q  107 aatggagactcacattatgcgagagcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggttttata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25189491 aatggagactcacattatgcgagagcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggttttata 25189590  T
Q  207 cctacaatatcatcgacatatattataattgcatatgattgttttattaac 257  Q
    |||||| |||||||||||||||||||||  | |||||||||||||||||||    
T  25189591 cctacagtatcatcgacatatattataa--gtatatgattgttttattaac 25189639  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 25160357 - 25160440
Alignment:
Q  132 cttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggttttatacctacaata 215  Q
    |||||||| ||||||||||| ||||||||   ||| |||||||||||||| |||||||| || || |||| ||||||| |||||    
T  25160357 cttaagaagccaccatactcttcttctaaagtttgaggaagatcccaatggaaaagagtcactaatggttgtatacctgcaata 25160440  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 25039025 - 25039081
Alignment:
Q  131 gcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaag 187  Q
    |||||||||||| |  |||||||||| ||| |||||||||||||||||||| |||||    
T  25039025 gcttaagaaaccgctgtactcgtcttgtaaaacttggggaagatcccaatggaaaag 25039081  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 25168899 - 25168978
Alignment:
Q  114 actcacattatgcgagagcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttac 193  Q
    |||||||| ||| |||  ||||||||||| ||||| || |||||||    ||| ||||||||||||||||||||||||||    
T  25168899 actcacatgatgagaggacttaagaaaccgccatattcatcttctagagtttgaggaagatcccaatgaaaaagagttac 25168978  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 25017872 - 25017928
Alignment:
Q  131 gcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaag 187  Q
    ||||||||| ||||  |||||||||| || | |||||||||||||||| ||||||||    
T  25017872 gcttaagaagccactgtactcgtcttgtagggcttggggaagatcccagtgaaaaag 25017928  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 25180567 - 25180667
Alignment:
Q  114 actcacattatgcgagagcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggttttatacctacaa 213  Q
    |||||||| ||| |||  |||||||| || ||||| || |||||||    ||| |||||||||||||||||||||||||| || |||| || |||| |||    
T  25180567 actcacatgatgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcccaatgaaaaagagttacaaatggttgtaaacctgcaa 25180666  T
Q  214 t 214  Q
    |    
T  25180667 t 25180667  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 9213486 - 9213385
Alignment:
Q  109 tggagactcacattatgcgagagcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggttttatacc 208  Q
    |||| ||||||| |||| ||| ||||||||| ||||||||||| |||||||    ||| || |||||||||||||||||||| || || |||||||||||    
T  9213486 tggaaactcacactatgagagggcttaagaagccaccatactcatcttctagagtttgtgggagatcccaatgaaaaagagtcaccaatggttttatacc 9213387  T
Q  209 ta 210  Q
    ||    
T  9213386 ta 9213385  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 42157012 - 42157097
Alignment:
Q  131 gcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggttttatacctacaatat 216  Q
    ||||||||| || ||||||||||| |||||   ||| ||||||||||||||||| | ||||||||| |||| || |||||||||||    
T  42157012 gcttaagaagccgccatactcgtcctctaaagtttgaggaagatcccaatgaaataaagttacgaatggttgtagacctacaatat 42157097  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 42290408 - 42290323
Alignment:
Q  131 gcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggttttatacctacaatat 216  Q
    ||||||||| || ||||||||||  |||||  |||| ||||||||||||||||| | ||||||||| |||| || |||||||||||    
T  42290408 gcttaagaagccgccatactcgttctctaaagcttgaggaagatcccaatgaaataaagttacgaatggttgtagacctacaatat 42290323  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 42167510 - 42167580
Alignment:
Q  131 gcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaaaagagttacgaacggtt 201  Q
    ||||||||| |||| |||||| || |||||  |||| ||||||||||||||||| ||||||||||| ||||    
T  42167510 gcttaagaagccactatactcatcctctaaagcttgaggaagatcccaatgaaatagagttacgaatggtt 42167580  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 30360701 - 30360639
Alignment:
Q  122 tatgcgagagcttaagaaaccaccatactcgtcttctaagacttggggaagatcccaatgaaa 184  Q
    ||||||||  ||||||||||| |||||||||||||| ||| |||| || ||||||||||||||    
T  30360701 tatgcgaggacttaagaaacctccatactcgtcttccaaggcttgtggtagatcccaatgaaa 30360639  T

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