View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12331_high_10 (Length: 348)

Name: NF12331_high_10
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12331_high_10
NF12331_high_10
[»] chr3 (1 HSPs)
chr3 (18-335)||(5387464-5387781)
[»] chr4 (4 HSPs)
chr4 (31-335)||(4875885-4876189)
chr4 (57-301)||(1326319-1326563)
chr4 (202-335)||(44185487-44185620)
chr4 (33-144)||(44185351-44185462)
[»] chr8 (7 HSPs)
chr8 (136-291)||(26531509-26531664)
chr8 (141-227)||(27183114-27183200)
chr8 (141-227)||(27231085-27231171)
chr8 (177-235)||(12646279-12646337)
chr8 (177-235)||(12651411-12651469)
chr8 (120-230)||(18095555-18095665)
chr8 (141-230)||(18140242-18140331)
[»] scaffold0831 (1 HSPs)
scaffold0831 (73-290)||(2047-2264)
[»] scaffold2107 (1 HSPs)
scaffold2107 (171-227)||(15-71)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 5387464 - 5387781
Alignment:
Q  18 cttaacacataattggcttcaccttcgagaaagaaatcaatggctacaaaaagtgacaaggttagtaacagtaactatatttccgatgacatttcctttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5387464 cttaacacataattggcttcaccttcgagaaagaaatcaatggctacaaaaagtgacaaggttagtaacagtaactatatttccgatgacatttcctttt 5387563  T
Q  118 ctattctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5387564 ctattctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgtt 5387663  T
Q  218 ccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcctcgagacggtttcaat 317  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||| |||| ||||| |||| ||||||||||  |||||||||| ||| |||| ||||    
T  5387664 ccgcaccaatttcatatttatgcatcgctcattgtatgatcacacctttctcatcctatatataaaggagatattgccacatcctcaagatggttccaat 5387763  T
Q  318 ctgtatttgctctctgct 335  Q
    ||||||||||||||||||    
T  5387764 ctgtatttgctctctgct 5387781  T

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Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 31 - 335
Target Start/End: Original strand, 4875885 - 4876189
Alignment:
Q  31 tggcttcaccttcgagaaagaaatcaatggctacaaaaagtgacaaggttagtaacagtaactatatttccgatgacatttccttttctattctttccaa 130  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  4875885 tggcttcacgttcgagaaagaaatccatggctacaaaaagtgacaaggttagtaaccgtagctatattcccgatgacatttccttttctattctttccaa 4875984  T
Q  131 attacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttc 230  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  4875985 attacccctccaatctctcaattgatttacatgtgcctccaaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttc 4876084  T
Q  231 atatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgctct 330  Q
    |||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||    
T  4876085 atatctatgcatcgatcattgtacgatcacacttatctctttctaaatattaaggagatattgccacatccacgagacggttccaatctgtatttgctct 4876184  T
Q  331 ctgct 335  Q
    |||||    
T  4876185 ctgct 4876189  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 57 - 301
Target Start/End: Original strand, 1326319 - 1326563
Alignment:
Q  57 atggctacaaaaagtgacaaggttagtaacagtaactatatttccgatgacatttccttttctattctttccaaattacccctcaaatctctcaatcgat 156  Q
    |||||||||||||||||||||||||| |||| || ||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  1326319 atggctacaaaaagtgacaaggttagcaacactagctatattgctgatgacatttccttctctattctttccaaattacctctcaaatctctcaaacgat 1326418  T
Q  157 ttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaa 256  Q
    |||| ||||| | |||| | | |||||||||||||||||||||| |||||||||   |||| |||||||||||||||||||||||| | ||| |||||||    
T  1326419 ttacgtgtgcatgcaaaccatagtctcttttatttcaaaacccttatttcatgcctatgtttcgcaccaatttcatatctatgcattgttcactgtacaa 1326518  T
Q  257 tcacacctatctcttcctaaatattaaggagatatcaccacatcc 301  Q
    | |||| ||||||||||| ||||| ||||||||||  ||||||||    
T  1326519 tgacacatatctcttccttaatataaaggagatattgccacatcc 1326563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 202 - 335
Target Start/End: Original strand, 44185487 - 44185620
Alignment:
Q  202 atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcc 301  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44185487 atttcatgcaattgttccacaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcgccacatcc 44185586  T
Q  302 tcgagacggtttcaatctgtatttgctctctgct 335  Q
    ||||||||||| ||||||||||||||||||||||    
T  44185587 tcgagacggttccaatctgtatttgctctctgct 44185620  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 44185351 - 44185462
Alignment:
Q  33 gcttcaccttcgagaaagaaatcaatggctacaaaaagtgacaaggttagtaacagtaactatatttccgatgacatttccttttctattctttccaaat 132  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| | ||||| ||||| |||||||||||||||||||    
T  44185351 gcttcacgttcgagaaagaaatccatggctacaaaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaat 44185450  T
Q  133 tacccctcaaat 144  Q
    ||||||||||||    
T  44185451 tacccctcaaat 44185462  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 26531509 - 26531664
Alignment:
Q  136 ccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatc 235  Q
    |||||||||||||||| || ||||| ||||| | |||||| ||||||||||||||| ||||||||| ||| ||| |  |||||||||  |||||||||||    
T  26531509 ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttatttgaaaaccctagttttatgaatatgttccgcaaaaatttcatatc 26531608  T
Q  236 tatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatat 291  Q
    ||||||||  |||||||||||  |||| |||||||| |||||||| ||||||||||    
T  26531609 tatgcatcagtcattgtacaacaacacttatctctttctaaatataaaggagatat 26531664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 27183114 - 27183200
Alignment:
Q  141 aaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaat 227  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||  | |||||||||| ||||    
T  27183114 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaat 27183200  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 27231171 - 27231085
Alignment:
Q  141 aaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaat 227  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||  | |||||||||| ||||    
T  27231171 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaat 27231085  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 12646279 - 12646337
Alignment:
Q  177 tggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatc 235  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||    
T  12646279 tggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatc 12646337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 12651411 - 12651469
Alignment:
Q  177 tggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatc 235  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||    
T  12651411 tggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatc 12651469  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 18095555 - 18095665
Alignment:
Q  120 attctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttcc 219  Q
    ||||| ||||||||||| |||||||| ||||| || || ||||||||   |||||| ||||| ||| | || |||||||||||||||||| |  ||||||    
T  18095555 attctctccaaattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtcacttcttttccaaaaccctaatttcatgaacatgttcc 18095654  T
Q  220 gcaccaatttc 230  Q
    |||||||||||    
T  18095655 gcaccaatttc 18095665  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 18140331 - 18140242
Alignment:
Q  141 aaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttc 230  Q
    ||||||||||| || |||||||||||    ||||| ||||| |||||||| |||||||||||||||||| |  |||||||||||||||||    
T  18140331 aaatctctcaaacgttttacctgtgctaaaaaatcatggtcacttttattccaaaaccctaatttcatgaacatgttccgcaccaatttc 18140242  T

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Target: scaffold0831 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 290
Target Start/End: Complemental strand, 2264 - 2047
Alignment:
Q  73 acaaggttagtaacagtaactatatttccgatgacatttccttttctattctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaa 172  Q
    ||||||||||||  ||||||||| || | || ||  |||||||   |||| | |||||| |||| || ||||||||||| |||||||| ||||| | |||    
T  2264 acaaggttagtagtagtaactatgttcctgacgatgtttccttcgttattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaa 2165  T
Q  173 atcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttc 272  Q
     || ||||||||||||||| || | ||| |||||||| || |||| |||| ||||||||||| ||||||||| |||||||||||| |||| | ||| |||    
T  2164 gtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttc 2065  T
Q  273 ctaaatattaaggagata 290  Q
    |||||||| |||||||||    
T  2064 ctaaatataaaggagata 2047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 71 - 15
Alignment:
Q  171 aaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaat 227  Q
    ||||| ||||||||||||||||||| |||||||||||| |||  |||||||| ||||    
T  71 aaatcatggtctcttttatttcaaagccctaatttcattcaaaagttccgcaacaat 15  T

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