View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12331_high_11 (Length: 337)

Name: NF12331_high_11
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12331_high_11
NF12331_high_11
[»] chr6 (11 HSPs)
chr6 (1-320)||(1408197-1408516)
chr6 (19-134)||(1411335-1411450)
chr6 (27-136)||(1420699-1420808)
chr6 (19-135)||(1416269-1416385)
chr6 (243-312)||(1411087-1411156)
chr6 (243-320)||(1414455-1414532)
chr6 (200-235)||(7931804-7931839)
chr6 (208-240)||(6536975-6537007)
chr6 (208-240)||(7785754-7785786)
chr6 (208-240)||(20512654-20512686)
chr6 (208-240)||(27909648-27909680)
[»] chr8 (11 HSPs)
chr8 (26-136)||(14339981-14340091)
chr8 (26-136)||(3601111-3601221)
chr8 (242-320)||(3600595-3600673)
chr8 (242-320)||(14339462-14339540)
chr8 (196-240)||(6950338-6950382)
chr8 (200-234)||(10383905-10383939)
chr8 (193-234)||(31862506-31862547)
chr8 (198-235)||(41606918-41606955)
chr8 (190-234)||(2458582-2458626)
chr8 (208-240)||(11795120-11795152)
chr8 (208-240)||(30918141-30918173)
[»] chr3 (9 HSPs)
chr3 (193-234)||(237410-237451)
chr3 (208-240)||(43115084-43115116)
chr3 (193-235)||(32711438-32711480)
chr3 (207-240)||(45432949-45432982)
chr3 (208-240)||(5292530-5292562)
chr3 (208-240)||(13371145-13371177)
chr3 (208-240)||(21862185-21862217)
chr3 (200-240)||(27792892-27792932)
chr3 (193-229)||(48286831-48286867)
[»] chr5 (7 HSPs)
chr5 (193-232)||(36638760-36638799)
chr5 (193-240)||(38104867-38104914)
chr5 (193-234)||(8985674-8985715)
chr5 (208-240)||(19138727-19138759)
chr5 (208-244)||(37526205-37526241)
chr5 (208-244)||(37588366-37588402)
chr5 (208-244)||(37690642-37690678)
[»] chr4 (5 HSPs)
chr4 (190-237)||(53943616-53943663)
chr4 (193-235)||(18628558-18628600)
chr4 (208-240)||(5131260-5131292)
chr4 (190-234)||(14011244-14011288)
chr4 (208-240)||(24929521-24929553)
[»] chr2 (9 HSPs)
chr2 (193-240)||(27288644-27288691)
chr2 (202-233)||(41950169-41950200)
chr2 (200-234)||(5781689-5781723)
chr2 (194-232)||(40837453-40837491)
chr2 (205-234)||(8820308-8820337)
chr2 (199-240)||(41032965-41033006)
chr2 (194-234)||(1647250-1647290)
chr2 (190-234)||(24141667-24141711)
chr2 (208-240)||(41817196-41817228)
[»] chr1 (11 HSPs)
chr1 (193-240)||(14128484-14128531)
chr1 (193-240)||(28262629-28262676)
chr1 (193-240)||(33722411-33722458)
chr1 (193-235)||(35590907-35590949)
chr1 (208-246)||(48748319-48748357)
chr1 (193-235)||(49373701-49373743)
chr1 (193-234)||(5047159-5047200)
chr1 (194-235)||(23402045-23402086)
chr1 (200-245)||(47885038-47885083)
chr1 (208-240)||(3110019-3110051)
chr1 (208-240)||(44815313-44815345)
[»] scaffold0159 (1 HSPs)
scaffold0159 (200-234)||(27021-27055)
[»] chr7 (1 HSPs)
chr7 (193-234)||(40428568-40428609)
[»] scaffold0089 (1 HSPs)
scaffold0089 (208-240)||(33637-33669)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 1408516 - 1408197
Alignment:
Q  1 caagaaagattggacgtgaaccaccgggacgaatcgatgcacctcctactgcaaagttagcaccatgcctataatttgacccaattgagttcaaatatgc 100  Q
    |||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1408516 caagaaagattggactataaccaccaggacgaatcgatgcacctcctactgcaaagttagcaccatgcctataatttgatccaattgagttcaaatatgc 1408417  T
Q  101 acttagatatggtagcttcaattcttcacctgcataattcacacacacagcaacaaaaaagttaaaacaaagatataacagtgcttcacttacataagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1408416 acttagatatggtagcttcaattcttcacctgcataattcacacacacagcaacaaaaaagttaaaacaaagatataacagtgcttcacttacataagtt 1408317  T
Q  201 atcatatagagcttatggaaataagctgaaaacaagttattaacttactgataaaatctatgataagacggccatcagaagctcttcctgtggtgcttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1408316 atcatatagagcttatggaaataagctgaaaacaagttattaacttactgataaaatctatgataagacggccatcagaagctcttcctgtggtgcttcc 1408217  T
Q  301 aaagtagcttataccattag 320  Q
    ||||||||||||||||||||    
T  1408216 aaagtagcttataccattag 1408197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 1411450 - 1411335
Alignment:
Q  19 aaccaccgggacgaatcgatgcacctcctactgcaaagttagcaccatgcctataatttgacccaattgagttcaaatatgcacttagatatggtagctt 118  Q
    |||||||||||||||| ||||| || |||||||||||||| || |||| ||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  1411450 aaccaccgggacgaatagatgcgccgcctactgcaaagttggcgccatacctgtaatttgatccaactgagttcaaatatgcacttagatatggtagctt 1411351  T
Q  119 caattcttcacctgca 134  Q
    || ||||||| |||||    
T  1411350 cagttcttcagctgca 1411335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 1420808 - 1420699
Alignment:
Q  27 ggacgaatcgatgcacctcctactgcaaagttagcaccatgcctataatttgacccaattgagttcaaatatgcacttagatatggtagcttcaattctt 126  Q
    ||||||||||||||||| ||| | |||||||| ||||||| ||| |||||||| |||| |||||||||||||||||||||||| |||| ||||| |||||    
T  1420808 ggacgaatcgatgcaccgcctgcagcaaagttggcaccatacctgtaatttgatccaactgagttcaaatatgcacttagatacggtaccttcagttctt 1420709  T
Q  127 cacctgcata 136  Q
    || |||||||    
T  1420708 cagctgcata 1420699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 1416385 - 1416269
Alignment:
Q  19 aaccaccgggacgaatcgatgcacctcctactgcaaagttagcaccatgcctataatttgacccaattgagttcaaatatgcacttagatatggtagctt 118  Q
    |||||| ||||||||| ||||| || | |||||||||||| ||||||||||| || ||||| |||| |||||||||||||||||||||||||||||| ||    
T  1416385 aaccacggggacgaatagatgcgccgcttactgcaaagttggcaccatgcctgtagtttgatccaactgagttcaaatatgcacttagatatggtagttt 1416286  T
Q  119 caattcttcacctgcat 135  Q
     | ||||||| ||||||    
T  1416285 aagttcttcagctgcat 1416269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 1411156 - 1411087
Alignment:
Q  243 acttactgataaaatctatgataagacggccatcagaagctcttcctgtggtgcttccaaagtagcttat 312  Q
    ||||||| |||||||| || || |||||||||||||||||||||||||   || |||||||| |||||||    
T  1411156 acttacttataaaatcaattatgagacggccatcagaagctcttcctgatatgtttccaaagaagcttat 1411087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 1414532 - 1414455
Alignment:
Q  243 acttactgataaaatctatgataagacggccatcagaagctcttcctgtggtgcttccaaagtagcttataccattag 320  Q
    ||||||| ||| |||| || || |||||||||||||||||||||||||   || |||||||| ||||||| |||||||    
T  1414532 acttacttatagaatcaattatgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccattag 1414455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 7931839 - 7931804
Alignment:
Q  200 tatcatatagagcttatggaaataagctgaaaacaa 235  Q
    |||| |||||||||||||||||||||||||||||||    
T  7931839 tatcctatagagcttatggaaataagctgaaaacaa 7931804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 6536975 - 6537007
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  6536975 agagcttatggaaataagctgaaaacaacttat 6537007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 7785786 - 7785754
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  7785786 agagcttatggaaataagctgaaaacaacttat 7785754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 20512686 - 20512654
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  20512686 agagcttatggaaataagctgaaaacaacttat 20512654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 27909680 - 27909648
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  27909680 agagcttatggaaataagctgaaaacaacttat 27909648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 14340091 - 14339981
Alignment:
Q  26 gggacgaatcgatgcacctcctactgcaaagttagcaccatgcctataatttgacccaattgagttcaaatatgcacttagatatggtagcttcaattct 125  Q
    ||||||||||| |||   | |||||||||||||||| ||||||||||||||||| |||| ||| ||||| ||||  |||||||||||||||| |||||||    
T  14340091 gggacgaatcggtgcggatgctactgcaaagttagctccatgcctataatttgatccaactgaattcaagtatgagcttagatatggtagctccaattct 14339992  T
Q  126 tcacctgcata 136  Q
    |||||||||||    
T  14339991 tcacctgcata 14339981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 3601221 - 3601111
Alignment:
Q  26 gggacgaatcgatgcacctcctactgcaaagttagcaccatgcctataatttgacccaattgagttcaaatatgcacttagatatggtagcttcaattct 125  Q
    ||||||||||| |||   | |||||||||||||||| |||||||| |||||||| |||| ||| ||||| ||||  |||||||||||||||| |||||||    
T  3601221 gggacgaatcggtgcggatgctactgcaaagttagctccatgcctgtaatttgatccaactgaattcaagtatgagcttagatatggtagctccaattct 3601122  T
Q  126 tcacctgcata 136  Q
    |||||||||||    
T  3601121 tcacctgcata 3601111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 3600673 - 3600595
Alignment:
Q  242 aacttactgataaaatctatgataagacggccatcagaagctcttcctgtggtgcttccaaagtagcttataccattag 320  Q
    |||||||||||||||||||  || ||||| |||||| ||  |||||||| | ||||||||||| |||||||||||||||    
T  3600673 aacttactgataaaatctaaaattagacgaccatcacaacatcttcctgagatgcttccaaagaagcttataccattag 3600595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 14339540 - 14339462
Alignment:
Q  242 aacttactgataaaatctatgataagacggccatcagaagctcttcctgtggtgcttccaaagtagcttataccattag 320  Q
    |||||||||||||||||||  || ||||| |||||  ||  |||||||| | ||||||||||| |||||||||||||||    
T  14339540 aacttactgataaaatctaaaattagacgaccatcgcaacatcttcctgagatgcttccaaagaagcttataccattag 14339462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 6950338 - 6950382
Alignment:
Q  196 aagttatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||| || |||||||||||||||||||||||||||| ||||    
T  6950338 aagttatcctaaagagcttatggaaataagctgaaaacaacttat 6950382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 10383905 - 10383939
Alignment:
Q  200 tatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||||||||||||||||||||||||| |||||    
T  10383905 tatcatatagagcttatggaaataagctgtaaaca 10383939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 31862506 - 31862547
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||||||| || |||||||||| ||||||||||||||||    
T  31862506 cataagttatcctagagagcttatgaaaataagctgaaaaca 31862547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 41606955 - 41606918
Alignment:
Q  198 gttatcatatagagcttatggaaataagctgaaaacaa 235  Q
    |||||| || ||||||||||||||||||||||||||||    
T  41606955 gttatcctagagagcttatggaaataagctgaaaacaa 41606918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 2458626 - 2458582
Alignment:
Q  190 ttacataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||||| |||| || ||||||||||||||||| |||||||||    
T  2458626 ttacataagctatcctagagagcttatggaaataaactgaaaaca 2458582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 11795120 - 11795152
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    ||||||||||||||||||||||||||| |||||    
T  11795120 agagcttatggaaataagctgaaaacaggttat 11795152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 30918141 - 30918173
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  30918141 agagcttatggaaataagctgaaaacaacttat 30918173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 237410 - 237451
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  237410 cataagttatcctatagagcttacggaaataagctgaaaaca 237451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 43115084 - 43115116
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||||||||    
T  43115084 agagcttatggaaataagctgaaaacaagttat 43115116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 32711438 - 32711480
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaa 235  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||    
T  32711438 cataagttatcctatggagcttaaggaaataagctgaaaacaa 32711480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 45432982 - 45432949
Alignment:
Q  207 tagagcttatggaaataagctgaaaacaagttat 240  Q
    ||||||||||||||||||||||||||||| ||||    
T  45432982 tagagcttatggaaataagctgaaaacaacttat 45432949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 5292562 - 5292530
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  5292562 agagcttatggaaataagctgaaaacaacttat 5292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 13371145 - 13371177
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  13371145 agagcttatggaaataagctgaaaacaacttat 13371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 21862217 - 21862185
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  21862217 agagcttatggaaataagctgaaaacaacttat 21862185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 27792892 - 27792932
Alignment:
Q  200 tatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    |||||| |||||||||| |||||||||||||||||| ||||    
T  27792892 tatcatgtagagcttatagaaataagctgaaaacaacttat 27792932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 48286867 - 48286831
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctga 229  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  48286867 cataagttatcatgtagagcttatagaaataagctga 48286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 36638760 - 36638799
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaa 232  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  36638760 cataagttatcctagagagcttatggaaataagctgaaaa 36638799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 38104914 - 38104867
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    |||||| |||| || |||||||||||||||||||||||||||| ||||    
T  38104914 cataagctatcttagagagcttatggaaataagctgaaaacaacttat 38104867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 8985674 - 8985715
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    |||||| |||| ||||||||||||||||| ||||||||||||    
T  8985674 cataagctatcctatagagcttatggaaagaagctgaaaaca 8985715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 19138759 - 19138727
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  19138759 agagcttatggaaataagctgaaaacaatttat 19138727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 37526241 - 37526205
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttattaac 244  Q
    |||||||||||||||||||||||||||  ||||||||    
T  37526241 agagcttatggaaataagctgaaaacagcttattaac 37526205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 37588402 - 37588366
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttattaac 244  Q
    |||||||||||||||||||||||||||  ||||||||    
T  37588402 agagcttatggaaataagctgaaaacagcttattaac 37588366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 37690678 - 37690642
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttattaac 244  Q
    |||||||||||||||||||||||||||  ||||||||    
T  37690678 agagcttatggaaataagctgaaaacagcttattaac 37690642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 53943616 - 53943663
Alignment:
Q  190 ttacataagttatcatatagagcttatggaaataagctgaaaacaagt 237  Q
    ||||||||||| ||||  |||||||||||||||||||||||| |||||    
T  53943616 ttacataagttgtcatggagagcttatggaaataagctgaaatcaagt 53943663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 18628600 - 18628558
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaa 235  Q
    ||||||||||| |  ||||||||||||||||||||||||||||    
T  18628600 cataagttatcttggagagcttatggaaataagctgaaaacaa 18628558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 5131292 - 5131260
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  5131292 agagcttatggaaataagctgaaaacaacttat 5131260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 14011244 - 14011288
Alignment:
Q  190 ttacataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||    
T  14011244 ttacataagctatcttggagagcttatggaaataagctgaaaaca 14011288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 24929521 - 24929553
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  24929521 agagcttatggaaataagctgaaaacaatttat 24929553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 27288644 - 27288691
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||    
T  27288644 cataagttatcatgtagagtttacggaaataagctgaaaacaacttat 27288691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 233
Target Start/End: Original strand, 41950169 - 41950200
Alignment:
Q  202 tcatatagagcttatggaaataagctgaaaac 233  Q
    ||||||||||||||||||||||||||||||||    
T  41950169 tcatatagagcttatggaaataagctgaaaac 41950200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 5781689 - 5781723
Alignment:
Q  200 tatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||| |||||||||||||||||||||||||||    
T  5781689 tatcatagagagcttatggaaataagctgaaaaca 5781723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 40837491 - 40837453
Alignment:
Q  194 ataagttatcatatagagcttatggaaataagctgaaaa 232  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  40837491 ataagctatcatgtagagcttatggaaataagctgaaaa 40837453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 8820337 - 8820308
Alignment:
Q  205 tatagagcttatggaaataagctgaaaaca 234  Q
    ||||||||||||||||||||||||||||||    
T  8820337 tatagagcttatggaaataagctgaaaaca 8820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 41033006 - 41032965
Alignment:
Q  199 ttatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||    
T  41033006 ttatcttatagagtttatggaaataagctgaaaacaacttat 41032965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 1647250 - 1647290
Alignment:
Q  194 ataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  1647250 ataagctattatagagagcttatggaaataagctgaaaaca 1647290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 24141711 - 24141667
Alignment:
Q  190 ttacataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||||| |||| ||||||||||||| ||| ||||||||||||    
T  24141711 ttacataagctatcctatagagcttatgaaaacaagctgaaaaca 24141667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 41817196 - 41817228
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  41817196 agagcttatggaaataagctgaaaacaaattat 41817228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 14128531 - 14128484
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    ||||||||||| || |||||||||||||||||||||||| ||| ||||    
T  14128531 cataagttatcctaaagagcttatggaaataagctgaaagcaatttat 14128484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 28262676 - 28262629
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    ||||||||||| |||||| |||||||||||||||| ||||||| ||||    
T  28262676 cataagttatcctatagaacttatggaaataagctaaaaacaatttat 28262629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 33722458 - 33722411
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaagttat 240  Q
    ||||||||||| || |||| ||||||||||||||||||||||| ||||    
T  33722458 cataagttatcctacagaggttatggaaataagctgaaaacaacttat 33722411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 35590949 - 35590907
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaa 235  Q
    |||||| ||||||  ||||||||||||||||||||||||||||    
T  35590949 cataagctatcatggagagcttatggaaataagctgaaaacaa 35590907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 48748357 - 48748319
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttattaactt 246  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  48748357 agagcttatggaaataagctgaaaacaacttatgaactt 48748319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 49373743 - 49373701
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaacaa 235  Q
    |||||||||||  |||||||||||| |||||||||||||||||    
T  49373743 cataagttatccaatagagcttatgaaaataagctgaaaacaa 49373701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 5047159 - 5047200
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    |||||| ||||||  |||||||||||||||||||||||||||    
T  5047159 cataagctatcatgaagagcttatggaaataagctgaaaaca 5047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 23402045 - 23402086
Alignment:
Q  194 ataagttatcatatagagcttatggaaataagctgaaaacaa 235  Q
    ||||| ||||||  ||||||||||||||||||||||||||||    
T  23402045 ataagctatcatcgagagcttatggaaataagctgaaaacaa 23402086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 47885083 - 47885038
Alignment:
Q  200 tatcatatagagcttatggaaataagctgaaaacaagttattaact 245  Q
    ||||||| ||| |||||||||||||||||||||||| |||| ||||    
T  47885083 tatcatagagaacttatggaaataagctgaaaacaacttatgaact 47885038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 3110019 - 3110051
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    ||||||||||||||||||| |||||||||||||    
T  3110019 agagcttatggaaataagcggaaaacaagttat 3110051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 44815345 - 44815313
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  44815345 agagcttatggaaataagctgaaaacaatttat 44815313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 27021 - 27055
Alignment:
Q  200 tatcatatagagcttatggaaataagctgaaaaca 234  Q
    ||||||| |||||||||||||||||||||||||||    
T  27021 tatcatagagagcttatggaaataagctgaaaaca 27055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 40428568 - 40428609
Alignment:
Q  193 cataagttatcatatagagcttatggaaataagctgaaaaca 234  Q
    |||||| |||| || |||||||||||||||||||||||||||    
T  40428568 cataagctatcctaaagagcttatggaaataagctgaaaaca 40428609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 33669 - 33637
Alignment:
Q  208 agagcttatggaaataagctgaaaacaagttat 240  Q
    |||||||||||||||||||||||||||| ||||    
T  33669 agagcttatggaaataagctgaaaacaacttat 33637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University