View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12331_high_14 (Length: 302)
Name: NF12331_high_14
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 27469811 - 27469984
Alignment:
| Q |
12 |
gagagcaggtttattagaagcagcagtgtgtttacttaagaagatgacttcatcaacaacctctccagtaacctcttcccaccttgtatccaaataatct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27469811 |
gagagcaggtttattagaagcagcagtgtgtttacttaagaagatgacttcatcaacaacctctccagtaacctcttcccaccttgtatccaaataatct |
27469910 |
T |
|
| Q |
112 |
tccaccactatactctttccatgaagcaacactctcaacccttcattcacaaaactcttcatatcatcctaaat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27469911 |
tccaccactatactctttccatgaagcaacactctcaacccttcattcacaaaactcttcatatcatcctaaat |
27469984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 27470041 - 27470077
Alignment:
| Q |
250 |
gggtttttggttgaacctcgaaatggagtccaggttg |
286 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
27470041 |
gggtttttggttgaacctggaaatggggtccaggttg |
27470077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University