View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12331_high_2 (Length: 932)

Name: NF12331_high_2
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12331_high_2
NF12331_high_2
[»] chr5 (13 HSPs)
chr5 (19-716)||(39675407-39676122)
chr5 (142-350)||(10866218-10866426)
chr5 (142-350)||(10873879-10874087)
chr5 (142-350)||(10878950-10879158)
chr5 (142-350)||(10884021-10884229)
chr5 (136-361)||(10887942-10888167)
chr5 (159-359)||(10045775-10045975)
chr5 (739-830)||(39675263-39675353)
chr5 (664-717)||(10865768-10865823)
chr5 (19-75)||(10866502-10866558)
chr5 (19-75)||(10873747-10873803)
chr5 (19-75)||(10878818-10878874)
chr5 (19-75)||(10883889-10883945)


Alignment Details
Target: chr5 (Bit Score: 632; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 19 - 716
Target Start/End: Complemental strand, 39676122 - 39675407
Alignment:
Q  19 gatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676122 gatccagacaccactgcaccaacaacctcctcatcttccatggacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggttt 39676023  T
Q  119 tcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgaggga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39676022 tcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgaggga 39675923  T
Q  219 aactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675922 aactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaag 39675823  T
Q  319 aagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctggagggatcag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675822 aagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctggagggatcag 39675723  T
Q  419 aatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagattgattggt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675722 aatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagattgattggt 39675623  T
Q  519 aatttgtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagag----------------tgaggaagtttc 602  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||    
T  39675622 aattggtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagagtgagtgagagtgagagtgaggaagtttc 39675523  T
Q  603 atagttacatcgtaattaactcgtgcacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacat--cacatcatcacaag 700  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  39675522 atagttagatcgtaattaactcgtgaacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacatcacacatcatcacaag 39675423  T
Q  701 aagcctttacttgact 716  Q
    ||||||||||||||||    
T  39675422 aagcctttacttgact 39675407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 142 - 350
Target Start/End: Complemental strand, 10866426 - 10866218
Alignment:
Q  142 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 241  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10866426 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10866327  T
Q  242 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 341  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10866326 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10866227  T
Q  342 tgttaagta 350  Q
    |||||||||    
T  10866226 tgttaagta 10866218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 142 - 350
Target Start/End: Original strand, 10873879 - 10874087
Alignment:
Q  142 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 241  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10873879 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10873978  T
Q  242 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 341  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10873979 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10874078  T
Q  342 tgttaagta 350  Q
    |||||||||    
T  10874079 tgttaagta 10874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 142 - 350
Target Start/End: Original strand, 10878950 - 10879158
Alignment:
Q  142 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 241  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10878950 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10879049  T
Q  242 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 341  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10879050 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10879149  T
Q  342 tgttaagta 350  Q
    |||||||||    
T  10879150 tgttaagta 10879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 142 - 350
Target Start/End: Original strand, 10884021 - 10884229
Alignment:
Q  142 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 241  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10884021 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10884120  T
Q  242 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 341  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10884121 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10884220  T
Q  342 tgttaagta 350  Q
    |||||||||    
T  10884221 tgttaagta 10884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 136 - 361
Target Start/End: Original strand, 10887942 - 10888167
Alignment:
Q  136 acttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatct 235  Q
    ||||| ||||| || ||||||||||||| ||||||||||  ||||||||||||  |||||||||  | | |||| ||||||||||||| ||||| |||||    
T  10887942 acttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatct 10888041  T
Q  236 cggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaa 335  Q
    | |||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||     
T  10888042 cagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaac 10888141  T
Q  336 agtgtttgttaagtaaagtgaagaag 361  Q
    || ||||||||| || ||||||||||    
T  10888142 agcgtttgttaaatacagtgaagaag 10888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 159 - 359
Target Start/End: Complemental strand, 10045975 - 10045775
Alignment:
Q  159 atgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga 258  Q
    |||||| |||||| ||| ||||||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||    
T  10045975 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 10045876  T
Q  259 ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag 358  Q
    ||||| |||||||||||||| |||||||||| || ||||||||| || |||||||||||||| |||||||||||||  | |||||||||||| |||||||    
T  10045875 ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaag 10045776  T
Q  359 a 359  Q
    |    
T  10045775 a 10045775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 739 - 830
Target Start/End: Complemental strand, 39675353 - 39675263
Alignment:
Q  739 tgtgcacagactaattaagttttaaaaaactagtgttattnnnnnnnncaaatttgaaagaaacaaagttttaaataattcgttgaacgtaa 830  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||    
T  39675353 tgtgcacagactaattaagttttaaaaaactagtgttat-aaaaaaaacaaatttgaaagaaacaaagttttaaataattcattgaacgtaa 39675263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 717
Target Start/End: Complemental strand, 10865823 - 10865768
Alignment:
Q  664 atattttgtggaga--tgctaacatcacatcatcacaagaagcctttacttgacta 717  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||||| |||||||    
T  10865823 atattttgtggagagatgctaacattacatcatcactagaagcctttatttgacta 10865768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 10866558 - 10866502
Alignment:
Q  19 gatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 75  Q
    ||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10866558 gatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10866502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 10873747 - 10873803
Alignment:
Q  19 gatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 75  Q
    ||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10873747 gatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 10878818 - 10878874
Alignment:
Q  19 gatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 75  Q
    ||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10878818 gatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10878874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 10883889 - 10883945
Alignment:
Q  19 gatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 75  Q
    ||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10883889 gatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10883945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University