View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_high_20 (Length: 240)
Name: NF12331_high_20
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12866640 - 12866862
Alignment:
| Q |
1 |
tgttgtattaatattgagtgtgtttgacagaaagttcccataagtttcgtgaaaaggcattggcaacgagtaacaaacccagttactctaaggcttccaa |
100 |
Q |
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| T |
12866640 |
tgttgtattaatattgagtgtgtttgacagaaagttcccataagtttcgtgaaaaggcattggcaacgagtaacaaacccagttactctaaggcttccaa |
12866739 |
T |
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| Q |
101 |
acacgaccgaaaagaaagttttttggaagaaaactagtcaccatgttgtttggttttgcgatggttggaaagaatttttgcagattatttatctttgcgt |
200 |
Q |
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| T |
12866740 |
acacgaccgaaaagaaagttttttggaagaaaactagtcaccatgttgttaggttttgcggtggttggaaagaa--tttacagattatttatctttgcgt |
12866837 |
T |
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| Q |
201 |
gattcgcaacttttgatgtttcaat |
225 |
Q |
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|||| |||||||||||||||||||| |
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| T |
12866838 |
gatttgcaacttttgatgtttcaat |
12866862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 12966517 - 12966331
Alignment:
| Q |
37 |
cccataagtttcgtgaaaaggcattggcaacgagtaacaaacccagttactctaaggcttccaaacacgaccgaaaagaaagttttttggaagaaaacta |
136 |
Q |
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| T |
12966517 |
cccataagttttgtgaaaaggtattggaaaggaataagaaacccagttactttaaggtttccaaacatggtggaaaagaaagtttcttgggagaaaacta |
12966418 |
T |
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| Q |
137 |
gtcaccatgttgtttggttttgcgatggttggaaagaatttttgcagattatttatctttgcgtgattcgcaacttttgatgtttcaat |
225 |
Q |
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| T |
12966417 |
gtgaaaatgaagttatgttttgcaatggttggaaagaa--cttgcaaattatttgtctttgaatgaatcacaatttttggtgtttcaat |
12966331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 49742506 - 49742710
Alignment:
| Q |
1 |
tgttgtattaatattgagtgt--gtttgacagaaagttcccataagtttcgtgaaaaggcattggcaacgagtaacaaacccagttactctaaggcttcc |
98 |
Q |
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|||||| |||||||||| ||| || ||||||||||| ||| ||||||| |||| ||||||||||| | | ||||||| |||||||||||||| ||||| |
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| T |
49742506 |
tgttgtgttaatattgattgtttgtatgacagaaagtgcccgtaagttttgtgagaaggcattggctaggtataacaaatccagttactctaagacttcc |
49742605 |
T |
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| Q |
99 |
aaacacgaccgaaaagaaagttttttggaagaaaactagtcaccatgttgtttggttttgcgatggttggaaagaatttttgcagattatttatctttgc |
198 |
Q |
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| T |
49742606 |
aaatatgaccgaaaataaagttttttgggagaaaactagtgattataatgtttggttttgcaatggttggaaagaa--tttgcaaaatatttgtctttgg |
49742703 |
T |
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| Q |
199 |
gtgattc |
205 |
Q |
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||||||| |
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| T |
49742704 |
gtgattc |
49742710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 15133957 - 15134115
Alignment:
| Q |
55 |
aggcattggcaacgagtaacaaacccagttactctaaggcttccaaacacgaccgaaaagaaagttttttggaagaaaactagtcaccatgttgtttggt |
154 |
Q |
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||||||||||| || ||||||||||||| |||||||||||||||| | | | ||| ||| ||| |||| ||||||| ||| | ||| |||||||| |
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| T |
15133957 |
aggcattggcatggaataacaaacccagtcactctaaggcttccaactatggcacaaatgaacgttacttgggagaaaaccagtgattatgatgtttggt |
15134056 |
T |
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| Q |
155 |
tttgcgatggttggaaagaatttttgcagattatttatctttgcgtgattcgcaacttttg |
215 |
Q |
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| T |
15134057 |
tttgcaatggttggaaagaa--tttgcaaattatttgtctttgcgtgattcacaacttttg |
15134115 |
T |
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