View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12331_high_3 (Length: 778)
Name: NF12331_high_3
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_high_3 |
 | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 140 - 758
Target Start/End: Complemental strand, 3763114 - 3762496
Alignment:
| Q |
140 |
taataattgaccctaccccactccattttatattcctattcctatatatgcttcacttcattaagcagataacaaagttagcatcacaatttcacaattt |
239 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
3763114 |
taataattgaccctatcccactccattttattttcctattcctatatatgcttcacttgactaagcagataacaaagttagcatcacattttcacaaact |
3763015 |
T |
|
| Q |
240 |
ccaccaaataatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaa |
339 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3763014 |
ccaccaaattatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaa |
3762915 |
T |
|
| Q |
340 |
acttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtg |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3762914 |
acttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatgacatactaagtg |
3762815 |
T |
|
| Q |
440 |
gaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaacccttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3762814 |
gaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaacccttt |
3762715 |
T |
|
| Q |
540 |
gactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaat |
639 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
3762714 |
gactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttatgacagtgaat |
3762615 |
T |
|
| Q |
640 |
tttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggca |
739 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3762614 |
tttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggca |
3762515 |
T |
|
| Q |
740 |
gtggacttttcagatttgc |
758 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3762514 |
gtggacttttcagatttgc |
3762496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 249 - 771
Target Start/End: Complemental strand, 3777077 - 3776564
Alignment:
| Q |
249 |
aatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| || |||| ||| |||||| ||||| || |||||| |
|
|
| T |
3777077 |
aatgtcttccaaacatttcctcactttgttcttcttccttcttatctcttgtaacacactcacttc---ttcaacattagaaaaagaagatacctttgat |
3776981 |
T |
|
| Q |
349 |
tttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataacc |
448 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||| || ||||| |||||| | |||||||| || | |
|
|
| T |
3776980 |
tttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatgacatagttagtggaaaaaatc |
3776881 |
T |
|
| Q |
449 |
ctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgactttagg |
548 |
Q |
| |
|
| || | || ||||||||| |||| ||| ||| || |||||||| | | |||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
3776880 |
caacttcggttgcaattgttccaccatcatcaaaagtaaactcaacc------actttttttggtttagttagcatgattgacaaccctttaactttagg |
3776787 |
T |
|
| Q |
549 |
accagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttg |
648 |
Q |
| |
|
||| ||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3776786 |
acccgaattgagttctaaacttgttggtagagctcaaggattctatgcatctgcttcacaggaagaaataggttttcttatgacaatgaattttgctttc |
3776687 |
T |
|
| Q |
649 |
attgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtggacttt |
748 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
3776686 |
attgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaataaggttagggaaatgcctgttgttggtggtagtggacttt |
3776587 |
T |
|
| Q |
749 |
tcagatttgccacaggttctgct |
771 |
Q |
| |
|
|||||||||| | ||||| |||| |
|
|
| T |
3776586 |
tcagatttgctagaggttatgct |
3776564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 249 - 758
Target Start/End: Complemental strand, 3781393 - 3780890
Alignment:
| Q |
249 |
aatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgat |
348 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||| | | | ||||||||||| |||| ||||| ||| |
|
|
| T |
3781393 |
aatgccttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagacactttcgat |
3781294 |
T |
|
| Q |
349 |
tttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataacc |
448 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| ||| | | |||||||| || | |
|
|
| T |
3781293 |
tttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatgacgtcttgagtggaaaaaatc |
3781194 |
T |
|
| Q |
449 |
ctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgactttagg |
548 |
Q |
| |
|
| || | || ||||| ||| |||| ||| ||| || |||||||| | ||||||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
3781193 |
caacttcggttgcaattattccaccatcatcaaaagtaaactcaaccacc------gcttttggtttggttaacatgattgacaaccctttaactttagg |
3781100 |
T |
|
| Q |
549 |
accagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttg |
648 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
3781099 |
accagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgcttcacaagaagaactaggttttcttatgacaatgaattttgctttc |
3781000 |
T |
|
| Q |
649 |
attgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtggacttt |
748 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| | ||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3780999 |
attgaaggaaagtataatggtagtactcttactatcgtagggaggaatcctgccattaatttggttagggagatgcctgttgttggtggtagtggacttt |
3780900 |
T |
|
| Q |
749 |
tcagatttgc |
758 |
Q |
| |
|
|||||||||| |
|
|
| T |
3780899 |
tcagatttgc |
3780890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 260 - 758
Target Start/End: Complemental strand, 3752015 - 3751517
Alignment:
| Q |
260 |
aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcat------catcagaaaatgaagaaacttttgattttgt |
353 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
3752015 |
aacattttctcactttgttcttcttccttctcctctcttgcaacactctcacttcaacatcattacaatcattagaaaaacaagaaacttttgattttgt |
3751916 |
T |
|
| Q |
354 |
tcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccctaca |
453 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| |||||||| ||||| || || | ||||| || || || || |
|
|
| T |
3751915 |
tcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatcccact |
3751816 |
T |
|
| Q |
454 |
acaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgactttaggaccag |
553 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| || ||||| |||| |||||||| |||| |||| |||| ||||||||||| |||||||| |
|
|
| T |
3751815 |
gcaattacaattgttccaccaccattgaagctaaacacaacca--ctta----ttttggttcagtcaacatgtttgatgaccctttgactataggaccac |
3751722 |
T |
|
| Q |
554 |
aactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattga |
653 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| |||||||||||||||||||| || || | |||||||| || | ||||| |||||||| ||||| |
|
|
| T |
3751721 |
aattgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggctatgaactttgctttcattga |
3751622 |
T |
|
| Q |
654 |
aggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtggacttttcaga |
753 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| | | | ||||||||| ||| ||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
3751621 |
aggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattattggtggtagtggacttttcaga |
3751522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 260 - 758
Target Start/End: Complemental strand, 3746198 - 3745700
Alignment:
| Q |
260 |
aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatca------gaaaatgaagaaacttttgattttgt |
353 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||| || ||||| |||||||||| ||||||||| |
|
|
| T |
3746198 |
aacacttcctcacttttttcttcttccttctcttctcttgcaacaccctcacttcaacttcatcaccatcatttgaaaaagaagaaacttatgattttgt |
3746099 |
T |
|
| Q |
354 |
tcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccctaca |
453 |
Q |
| |
|
|||| ||||||||| ||| |||||| ||||||||| | ||||| ||||| ||||| ||||||| ||||| ||||| | |||||||| |||||||| |
|
|
| T |
3746098 |
tcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctact |
3745999 |
T |
|
| Q |
454 |
acaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgactttaggaccag |
553 |
Q |
| |
|
|||||||| |||| | || ||||||||| ||| || |||| || | |||||||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
3745998 |
tcaattacagttgtaccactaccattgaagctaaacacaac------tacttcttttggtttagtcaacattattgacaaccctttaactttaggaccaa |
3745905 |
T |
|
| Q |
554 |
aactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattga |
653 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| || ||||||||||||||| |||| || | |||| | || | |||| ||||||||| ||||| |
|
|
| T |
3745904 |
aaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgttcatggctatgacttttgctttcattga |
3745805 |
T |
|
| Q |
654 |
aggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtggacttttcaga |
753 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| |||||||||| | |||| ||| ||| |
|
|
| T |
3745804 |
aggaaagtataatgggagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcctattgttggtggtaccggacgttttaga |
3745705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 260 - 771
Target Start/End: Complemental strand, 3755882 - 3755371
Alignment:
| Q |
260 |
aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcac---------atcaacttcatcatcagaaaatgaagaaacttttgattt |
350 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||||||||||||| |||| |||| | |||||||||||||||| || |||||||| || |
|
|
| T |
3755882 |
aacacttcatcactttgttcttcttccttcttctttcttgcaacaccgtcactttaacaacatcatcatcatcatcagaaaatggtgacacttttgaatt |
3755783 |
T |
|
| Q |
351 |
tgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccct |
450 |
Q |
| |
|
||||||||| ||||||||||| || ||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
3755782 |
tgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccct |
3755686 |
T |
|
| Q |
451 |
acaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgactttaggac |
550 |
Q |
| |
|
|| || || || |||| | ||||||| |||||||| |||||||| | ||| ||||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
3755685 |
acttcagttgcagttgtcccaccaccaatgaaactaaactcaacc------actgcctttggttcagtccgcatgatcgacaaccctttaactttaggac |
3755592 |
T |
|
| Q |
551 |
cagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgat |
650 |
Q |
| |
|
|| | ||| |||||| |||||||||||||||||||||||||||||||||||| | || ||| | | ||| ||| || | |||||||||||||| | |
|
|
| T |
3755591 |
cacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggctatgaattttgcttttac |
3755492 |
T |
|
| Q |
651 |
tgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtggacttttc |
750 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| |||||| | | | || |||| ||||| ||||||||||| ||||||| |||||| ||||| |
|
|
| T |
3755491 |
tgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattggtggtagtggatttttc |
3755392 |
T |
|
| Q |
751 |
agatttgccacaggttctgct |
771 |
Q |
| |
|
|||||||| | ||||| |||| |
|
|
| T |
3755391 |
agatttgctagaggttatgct |
3755371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 247 - 771
Target Start/End: Complemental strand, 3767414 - 3766899
Alignment:
| Q |
247 |
ataatgtcttccaaacatttcctca---ctttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaactt |
343 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||| | | | | ||||||||||| |||| || |
|
|
| T |
3767414 |
ataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacag |
3767315 |
T |
|
| Q |
344 |
ttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaa |
443 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||| || ||||| |||||| | |||||||| |
|
|
| T |
3767314 |
ttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaa |
3767215 |
T |
|
| Q |
444 |
taaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgact |
543 |
Q |
| |
|
|||||||| | || | || ||| |||| |||| ||||| |||| | ||| ||||||| |||||||||||| ||||||||||| ||| |
|
|
| T |
3767214 |
aaaccctacttctatcgtagttattccaccatcatt-aaact----ccaac-------actgcctttggttcagtccgcatgatcgacaaccctttaact |
3767127 |
T |
|
| Q |
544 |
ttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttg |
643 |
Q |
| |
|
||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||| | || ||| | | ||| ||| || | |||||||||| |
|
|
| T |
3767126 |
ttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggctatgaattttg |
3767027 |
T |
|
| Q |
644 |
ctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtgg |
743 |
Q |
| |
|
|||| | |||||||||||||||||||||||| ||||||| ||||| |||||| | | | || |||| ||||| ||||||||||| ||||||| ||||| |
|
|
| T |
3767026 |
cttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattggtggtagtgg |
3766927 |
T |
|
| Q |
744 |
acttttcagatttgccacaggttctgct |
771 |
Q |
| |
|
| ||||||||||||| | ||||| |||| |
|
|
| T |
3766926 |
agttttcagatttgctagaggttatgct |
3766899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 319 - 596
Target Start/End: Complemental strand, 3771572 - 3771304
Alignment:
| Q |
319 |
tcatcatcagaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattct |
418 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||| ||||||||||| || ||| ||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
3771572 |
tcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattct |
3771476 |
T |
|
| Q |
419 |
actggcacgacatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagt |
518 |
Q |
| |
|
|||||||||| ||| |||||||| |||||| | | | | |||||||| ||||||| |||||||| || ||||| | ||||||||||| ||| |
|
|
| T |
3771475 |
actggcacgagatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaacc------actgcttttggttcagt |
3771382 |
T |
|
| Q |
519 |
ccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgc |
596 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||| |
|
|
| T |
3771381 |
ccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc |
3771304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 3763747 - 3763683
Alignment:
| Q |
21 |
catgagccaacaaccacgccacacacccattctgattcagccattgaatggaaccaaatgatata |
85 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3763747 |
catgagccaacaaccacgccatacacccattctgattcagccattgaatggaaccaaatgatata |
3763683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 758
Target Start/End: Complemental strand, 3770799 - 3770675
Alignment:
| Q |
634 |
atgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttg |
733 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||||| ||||||| ||||| |||||| | | || |||| ||| | ||||||||| | ||| |
|
|
| T |
3770799 |
atgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctatgattg |
3770700 |
T |
|
| Q |
734 |
gtggcagtggacttttcagatttgc |
758 |
Q |
| |
|
|||| | |||||||||||||||||| |
|
|
| T |
3770699 |
gtggtattggacttttcagatttgc |
3770675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 3789175 - 3789113
Alignment:
| Q |
621 |
ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactat |
683 |
Q |
| |
|
||||||| ||| ||||| ||||||||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
3789175 |
ttttcttatgattatgaactttgctttgtttgaaggaaagtataatggaagcaccattactat |
3789113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 3775659 - 3775566
Alignment:
| Q |
21 |
catgagccaacaaccacgccacacacccattctgattcagccat-tga----atggaaccaaatgata--tattcctatatatgctttttctca |
107 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||||||| ||| |||||||||||||||| | ||||||| |||| ||||||||| |
|
|
| T |
3775659 |
catgagccaacaactacgccacacacctattcagattcagccatgtgatgccatggaaccaaatgatatgttttcctatctatgttttttctca |
3775566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 758
Target Start/End: Complemental strand, 3845128 - 3844991
Alignment:
| Q |
621 |
ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggag |
720 |
Q |
| |
|
||||||| ||| |||||||||||| || ||||||| || ||||||||||| || |||||||||||||| || ||| || | | |||||||| || |
|
|
| T |
3845128 |
ttttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaa |
3845029 |
T |
|
| Q |
721 |
atgcctgttgttggtggcagtggacttttcagatttgc |
758 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| |||||||| |
|
|
| T |
3845028 |
atgcctgtgattggtggaagtgggctttttagatttgc |
3844991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 3763563 - 3763523
Alignment:
| Q |
105 |
tcaatgaccagttctctttttatatttttgatccataataa |
145 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
3763563 |
tcaatgatcacttctctttttatatttttgatccataataa |
3763523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 685
Target Start/End: Complemental strand, 3851554 - 3851509
Alignment:
| Q |
640 |
tttgctttgattgaaggaaagtataatggaagtactattactatct |
685 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
3851554 |
tttgccttgtttgaaggaaagtataatgggagtaccattactatct |
3851509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 758
Target Start/End: Original strand, 25985274 - 25985623
Alignment:
| Q |
400 |
ctaagccattttagattctactggcacgacatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggcc |
499 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| | |||||||| |||||| | |||| ||||||||| |||||| |||||| |||||||| |
|
|
| T |
25985274 |
ctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttgaaaa---actcaacc---- |
25985366 |
T |
|
| Q |
500 |
ttaatgcttttggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatc |
599 |
Q |
| |
|
| ||||||||||||||| ||||||||| |||||||| || |||||||| || ||||||| ||| | ||||||||||| |||||||||||||| || |
|
|
| T |
25985367 |
--actgcttttggtttagttaacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgcctc |
25985464 |
T |
|
| Q |
600 |
tgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatcca |
699 |
Q |
| |
|
||||||| || ||| || | || | |||||||||||| | |||||||| ||||| ||||| || || || ||||| |||||||||||||| |
|
|
| T |
25985465 |
aacatcacaaagtgaggtagaccttatcatggctatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcct |
25985564 |
T |
|
| Q |
700 |
gctcttaataaggttagggagatgcctgttgttggtggcagtggacttttcagatttgc |
758 |
Q |
| |
|
| | | ||||||||||||| |||||| | ||||||| ||||| |||||| ||||||| |
|
|
| T |
25985565 |
gtttctgataaggttagggaaatgcctataattggtggtagtggtcttttccgatttgc |
25985623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 758
Target Start/End: Original strand, 10020 - 10157
Alignment:
| Q |
621 |
ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggag |
720 |
Q |
| |
|
||||||| ||| |||||||||||| || ||||||| || ||||||||||| || |||||||||||||| || ||| || | | |||||||| || |
|
|
| T |
10020 |
ttttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaa |
10119 |
T |
|
| Q |
721 |
atgcctgttgttggtggcagtggacttttcagatttgc |
758 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| |||||||| |
|
|
| T |
10120 |
atgcctgtgattggtggaagtgggctttttagatttgc |
10157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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