View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12331_high_4 (Length: 597)
Name: NF12331_high_4
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_high_4 |
 | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Original strand, 4869435 - 4869999
Alignment:
| Q |
18 |
aatttatgcgtctgaatcgcgcttgatgatggtgatgagaatatattctaaggtggtgtcatatatccattataatacgacaacatcaaaaagcggccaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4869435 |
aatttatgcgtctgaatcgcgcttgatgatggtgatgagaatatattctgaggtggtgtcatatatccattataatacgacaacatcaaaaagcggccaa |
4869534 |
T |
|
| Q |
118 |
agattgggattgatttctttgagagagggagttgttggcttattagtgggtgagggaggaatgatgtgatgaaagacttgatgaacccttgcatgaattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4869535 |
agattgggattgatttctttgagagagggagttgttggcttattagtgggtgagggaggaatgatgtgatgaaagacttgatgaacccttgcatgaattt |
4869634 |
T |
|
| Q |
218 |
taaagagttcgaaccacgtattatattggacccttttttatactaaacgtaaccttgatgaaattggtgatagttgaaaatggtggtagagggatggata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4869635 |
taaagagttcgaaccacgtattatattggacccttttttatactaaacgtaaccttgatgaaattggtgataattgaaaatggtggtagagggatggata |
4869734 |
T |
|
| Q |
318 |
ggtgtggaaggagtaggggttgaaattgtccttcgagtggtagtatttttggggatgatttggccctgatggtgaatcaaggagaagaggaacgatggcg |
417 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4869735 |
ggtgtggaaggagttggggttgaaattgtccttcgagtggtagtatttttggggatgattcggccctgatggtgaatgaaggagaagaggaacgatggcg |
4869834 |
T |
|
| Q |
418 |
ctgtattaggtttacgagagaaggatgagtaccaacaacttactgataccatgtaagaattataataagataattattagtcgtgtgtcatttgcattga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4869835 |
ctgtattaggtttacgagagaaggatgagtaccaacaacttactgataccatgtaagaattataataagataattattagtcgtgtgtcatttgcattga |
4869934 |
T |
|
| Q |
518 |
gaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctatgatgtc |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4869935 |
gaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctattatgtc |
4869999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Original strand, 4843740 - 4844304
Alignment:
| Q |
18 |
aatttatgcgtctgaatcgcgcttgatgatggtgatgagaatatattctaaggtggtgtcatatatccattataatacgacaacatcaaaaagcggccaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4843740 |
aatttatgcgtctgaatcgcgcttgatgatggtgatgagaatatattctgaggtggtgtcatatatccattataatacgacaacatcaaaaagcggccaa |
4843839 |
T |
|
| Q |
118 |
agattgggattgatttctttgagagagggagttgttggcttattagtgggtgagggaggaatgatgtgatgaaagacttgatgaacccttgcatgaattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4843840 |
agattgggattgatttctttgagagagggagttgttggcttattagtgggtgagggaggaatgatgtgatgaaagacttgatgaacccttgcatgaattt |
4843939 |
T |
|
| Q |
218 |
taaagagttcgaaccacgtattatattggacccttttttatactaaacgtaaccttgatgaaattggtgatagttgaaaatggtggtagagggatggata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4843940 |
taaagagttcgaaccacgtattatattggacccttttttatactaaacgtaaccttgatgaaattggtgataattgaaaatggtggtagagggatggata |
4844039 |
T |
|
| Q |
318 |
ggtgtggaaggagtaggggttgaaattgtccttcgagtggtagtatttttggggatgatttggccctgatggtgaatcaaggagaagaggaacgatggcg |
417 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4844040 |
ggtgtggaaggagttggggttgaaattgtccttcgagtggtagtatttttggggatgattcggccctgatggtgaatgaaggagaagaggaacgatggcg |
4844139 |
T |
|
| Q |
418 |
ctgtattaggtttacgagagaaggatgagtaccaacaacttactgataccatgtaagaattataataagataattattagtcgtgtgtcatttgcattga |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4844140 |
ctgtattaggtttacgagagaaggatgagtaccaataacttactgataccatgtaagaattataataagataattattagtcgtgtgtcatttgcattga |
4844239 |
T |
|
| Q |
518 |
gaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctatgatgtc |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4844240 |
gaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctattatgtc |
4844304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 572
Target Start/End: Complemental strand, 40144383 - 40144335
Alignment:
| Q |
524 |
ccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgt |
572 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||| ||| |||||| |
|
|
| T |
40144383 |
ccgttgacacgagatatcaaactttagtttgacatcaagtcttaaccgt |
40144335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 27576 - 27531
Alignment:
| Q |
519 |
aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc |
564 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27576 |
aggatccgttgacaccaggtgtcaaactttagtttgacaccaaatc |
27531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 32997097 - 32997052
Alignment:
| Q |
519 |
aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc |
564 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
32997097 |
aggatccgttgacaccaggtgtcaaactttagtttgacaccaaatc |
32997052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 18228699 - 18228658
Alignment:
| Q |
523 |
tccgttgacactaggtgtcaaactttagtttgacatcaaatc |
564 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
18228699 |
tccgttgacaccaggtgtcaaactttagtttgacaccaaatc |
18228658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 6583307 - 6583352
Alignment:
| Q |
519 |
aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc |
564 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
6583307 |
aggatccgttgacaacaggtgtcaaactttagtttgacaccaaatc |
6583352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 557
Target Start/End: Complemental strand, 28360544 - 28360506
Alignment:
| Q |
519 |
aggatccgttgacactaggtgtcaaactttagtttgaca |
557 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
28360544 |
aggatccgttgacaccaggtgtcaaagtttagtttgaca |
28360506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 24720178 - 24720133
Alignment:
| Q |
519 |
aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc |
564 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
24720178 |
aggatccattgacactaggtgtcaaactttatattgacaccaaatc |
24720133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 567
Target Start/End: Complemental strand, 42317667 - 42317638
Alignment:
| Q |
538 |
tgtcaaactttagtttgacatcaaatctca |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42317667 |
tgtcaaactttagtttgacatcaaatctca |
42317638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 567
Target Start/End: Original strand, 42317005 - 42317053
Alignment:
| Q |
519 |
aggatccgttgacactaggtgtcaaactttagtttgacatcaaatctca |
567 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||| | ||||||||| |
|
|
| T |
42317005 |
aggatccgttgacaccaggtatgaaactttagtttgataccaaatctca |
42317053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 15942107 - 15942160
Alignment:
| Q |
520 |
ggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtc |
573 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||| | | ||||||||||||| |
|
|
| T |
15942107 |
ggatccgttgacaccaggtttcaaactttaatttgataccgaatctcaaccgtc |
15942160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University