View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_high_7 (Length: 418)
Name: NF12331_high_7
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 30168030 - 30168352
Alignment:
| Q |
20 |
ttatcgatcttgtgaagaacaattgggagttctatccttccactaacattctcgccaagctgaactattgtgtggaggatataacatcttggagccgttc |
119 |
Q |
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| T |
30168030 |
ttatcgatcttgtgaagaacaattgggagcactatccttccactaacattctcgccaagctgaactattgtgtggaggatataacatcttggagccgttc |
30168129 |
T |
|
| Q |
120 |
tgctattcccaacttcaaacatctcatcaacaagcagcgatttaaaattgaagaattccgcaatgatgcaagcgatgctactgaccctcagctgcaggta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30168130 |
tgctattcccaacttcaaacatctcatcaacaagcagcgatttaaaattgaagaattccgcaatgatgcaagcgatgctactgaccctcagctgcaggta |
30168229 |
T |
|
| Q |
220 |
atgcaacagaatctcacaactttaattcttcaagaggatagctactggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30168230 |
atgcaacagaatctcacaactttaattcttcaagaggatagctactggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagt |
30168329 |
T |
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| Q |
320 |
tctttcacgcttccgcttcagca |
342 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30168330 |
tctttcacgcttccgcttcagca |
30168352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 359
Target Start/End: Complemental strand, 12353981 - 12353647
Alignment:
| Q |
25 |
gatcttgtgaagaacaattgggagttctatccttccactaacattctcgccaagctgaactattgtgtggaggatataacatcttggagccgttctgcta |
124 |
Q |
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||||||||||| |||||||||||| ||||||||||| ||||| | ||| ||||| |||||||||||||| ||| || | ||||||||||||| || |
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| T |
12353981 |
gatcttgtgaaaaacaattgggagcaatatccttccaccaacatcttaaacaaactgaattattgtgtggaggacatatcaacctggagccgttctgtta |
12353882 |
T |
|
| Q |
125 |
ttcccaacttcaaacatctcatcaacaagcagcgatttaaaattgaagaattccgcaatgatgcaagcgatgctactgaccctcagctgcaggtaatgca |
224 |
Q |
| |
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|| |||||||| || || || ||||| || |||| | ||||| |||||| | | || |||| ||||| | ||| ||| | || ||||| |||| |
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| T |
12353881 |
acccaaacttcaagcaccttattaacaaacaacgatccatcattgaggaattcagaacagacgcaaatgatgccaatgatcctgaacttcaggtcctgca |
12353782 |
T |
|
| Q |
225 |
acagaatctcacaactttaattcttcaagaggatagctactggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagttcttt |
324 |
Q |
| |
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||| |||||| |||||||||||||||||||||| || || |||| ||||||||| ||||| |||||| |||| || || |||| |||||| | ||||||| |
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| T |
12353781 |
acaaaatctcgcaactttaattcttcaagaggagagttattggaggcagcgttctaaaatcttttggttatcagaaggcgacacaaacagtaggttcttt |
12353682 |
T |
|
| Q |
325 |
cacgcttccgcttcagcacgtaggcggaaaaacac |
359 |
Q |
| |
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|| |||| |||||||| |||| |||||| ||||| |
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| T |
12353681 |
catgcttatgcttcagcccgtaagcggaataacac |
12353647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 23148105 - 23148439
Alignment:
| Q |
25 |
gatcttgtgaagaacaattgggagttctatccttccactaacattctcgccaagctgaactattgtgtggaggatataacatcttggagccgttctgcta |
124 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| ||||| | |||| ||||| |||||||||||||| ||| || | ||||||||||||| || |
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| T |
23148105 |
gatcttgtgaaaaacaattgggagcactatccttccaccaacatcttaaccaaactgaattattgtgtggaggacatatcaacctggagccgttctgtta |
23148204 |
T |
|
| Q |
125 |
ttcccaacttcaaacatctcatcaacaagcagcgatttaaaattgaagaattccgcaatgatgcaagcgatgctactgaccctcagctgcaggtaatgca |
224 |
Q |
| |
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|| |||||||| ||||| || ||||| ||||||| | ||||| |||||| | | || |||| ||||| | ||| ||| | || ||||| |||| |
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| T |
23148205 |
ccccaaacttcaagcatcttattaacaaacagcgatccatcattgaggaattcagaacagacgcaaatgatgccaatgatcctgaacttcaggtcctgca |
23148304 |
T |
|
| Q |
225 |
acagaatctcacaactttaattcttcaagaggatagctactggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagttcttt |
324 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| || || |||| |||||||| ||||| |||||| |||| || || |||| |||||||| ||||||| |
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| T |
23148305 |
gcaaaatctcgcaactttaattcttcaagaggagagttattggagacagcgttctaaaatcttttggttatcagaaggcgacacaaacagcaggttcttt |
23148404 |
T |
|
| Q |
325 |
cacgcttccgcttcagcacgtaggcggaaaaacac |
359 |
Q |
| |
|
|| ||||| |||||||| |||| |||||| ||||| |
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| T |
23148405 |
catgcttctgcttcagcccgtaagcggaataacac |
23148439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 32496382 - 32496716
Alignment:
| Q |
25 |
gatcttgtgaagaacaattgggagttctatccttccactaacattctcgccaagctgaactattgtgtggaggatataacatcttggagccgttctgcta |
124 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| ||||| | |||| ||||| |||||||||||||| ||| || | ||||||||||||| || |
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| T |
32496382 |
gatcttgtgaaaaacaattgggagcactatccttccaccaacatcttaaccaaactgaattattgtgtggaggacatatcaacctggagccgttctgtta |
32496481 |
T |
|
| Q |
125 |
ttcccaacttcaaacatctcatcaacaagcagcgatttaaaattgaagaattccgcaatgatgcaagcgatgctactgaccctcagctgcaggtaatgca |
224 |
Q |
| |
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|| |||||||| ||||| || ||||| ||||||| | ||||| |||||| | | || |||| ||||| | ||| ||| | || ||||| |||| |
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| T |
32496482 |
ccccaaacttcaagcatcttattaacaaacagcgatccatcattgaggaattcagaacagacgcaaatgatgccaatgatcctgaacttcaggtcctgca |
32496581 |
T |
|
| Q |
225 |
acagaatctcacaactttaattcttcaagaggatagctactggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagttcttt |
324 |
Q |
| |
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|| |||||| |||||||||||||||||||||| || || |||| |||||||| ||||| |||||| |||| || || |||| |||||||| ||||||| |
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| T |
32496582 |
gcaaaatctcgcaactttaattcttcaagaggagagttattggagacagcgttctaaaatcttttggttatcagaaggcgacacaaacagcaggttcttt |
32496681 |
T |
|
| Q |
325 |
cacgcttccgcttcagcacgtaggcggaaaaacac |
359 |
Q |
| |
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|| ||||| |||||||| |||| |||||| ||||| |
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|
| T |
32496682 |
catgcttctgcttcagcccgtaagcggaataacac |
32496716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 9183691 - 9183639
Alignment:
| Q |
310 |
aacagcaagttctttcacgcttccgcttcagcacgtaggcggaaaaacactat |
362 |
Q |
| |
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||||||||||||||||||||||| || ||||| ||| |||| ||||||||||| |
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|
| T |
9183691 |
aacagcaagttctttcacgcttcagcatcagcccgtcggcgtaaaaacactat |
9183639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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