View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_1 (Length: 1179)
Name: NF12331_low_1
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 563 - 1154
Target Start/End: Original strand, 28028831 - 28029422
Alignment:
| Q |
563 |
tcaattaattgattaactataaactatgaatacaatgctattgattacttttcaatacttttgatcaaaatagttagaccaatgtcttggtcacacgtga |
662 |
Q |
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| T |
28028831 |
tcaattaattgattaactacaaactatgaatacaatgctatcgattacttttcaatacttttgatcaaaatagttagaccaatgtcttggtcacacgtga |
28028930 |
T |
|
| Q |
663 |
gcaccagcgcggctgcccatggccaagccttgggttaccatctc--------tctctctagctaaactattatttaattaattttttgattaaaattaaa |
754 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28028931 |
gcaccaacgcggctgcccatggccaagccttgggttaccatctctctctctctctctctcgctaaactattatttaattaattttttgattaaaattaaa |
28029030 |
T |
|
| Q |
755 |
tagaaacgacatggaattttccttctttttgtctcgttattgtaatagattttggaacattactcttatgaacaattaagggatgcctagttaaaaacta |
854 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28029031 |
tagaaacgacatggaattttccttcttattgtctcgttattgtaataga-tttggaacattactcttatgaacaattaagggatgcctagtttaaaacta |
28029129 |
T |
|
| Q |
855 |
atgaaggtctaaatatcttattttaagagagaggtcagtgtaattttcttaaatattgtgtttgttttctannnnnnnatcattagaaagtttaactttt |
954 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
28029130 |
atgaaggtctaaa----ttatttta--agagaggtcagtgtaattttcttaaatattgtgtttgttttccatttttttatcattagaaagtttaactttt |
28029223 |
T |
|
| Q |
955 |
aatacaaatggtaaaaatttacctttaaaccatttttcagaggtttagatacacacttttttcttgatactcaattttaggaagaatgtttcagggtcag |
1054 |
Q |
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| T |
28029224 |
aatacaaatggtaaaaatttacctttaaaccatttttcagaggtttagatacacaattttttcttgatactttattttaggaagaatgtttcagggtgag |
28029323 |
T |
|
| Q |
1055 |
cataataatttttaatagtgagggagctttacaacaaatataaatgaggnnnnnnnnnattgcataagaaacttgtttgtttgtggatataaagcagtgg |
1154 |
Q |
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| T |
28029324 |
cctaataatttttaatagtgagtgagctttacaacaaatataaatgagg-ttttttttattgcataagaaacttgtttgtttgtggatataaagcagtgg |
28029422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 158 - 553
Target Start/End: Original strand, 28028393 - 28028798
Alignment:
| Q |
158 |
tgccaagcaatgtcagattctgtattaacaaattttcccatgattggttaccaata-----cacatggtttatgagtattgacacttccagagcaattga |
252 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28028393 |
tgccaagcaatgtcagattctgtattagcaaattttcccatcattggttaccaatataatacacatggtttatgagtattgacacttccagagcaattga |
28028492 |
T |
|
| Q |
253 |
agaacgttcagatcggggcgcttgcgaacaacaggtggtatgatgtgttcccaaatgcacaattggaaaatttagtaacacttgcatctgatcactatcc |
352 |
Q |
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||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28028493 |
agaacgttcggatcggggcgcttgcgaacgacaggtggcatgatgtgttcccaaatgcacaattggaaaatttagtaacacttgcatctgatcactatcc |
28028592 |
T |
|
| Q |
353 |
tatattgttgaatcttgaaataataattagagttggagctcatcgtaatttcaagtatgagaatgcatgaat--tgttaagctcgagtttggcgatattg |
450 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28028593 |
tatattgttgaatcttgaaataataatcagagttagagctcatcgtaatttcaagtatgagaatgcatgaattgtgttaagctcgagtttggcgatattg |
28028692 |
T |
|
| Q |
451 |
tcaaagaaagttggtgacgaacaaaaagactagca-aatgtactagtgtgtc--caagtagtaatatttataaaaagagtttgtttccaagaggattgtc |
547 |
Q |
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| T |
28028693 |
tcaaagaaagttggtgacgaacaaaaagactagcatggagtactagtgtgtcgtcaagtaataatatttataaaaagagtttgtttccaagaggattgtc |
28028792 |
T |
|
| Q |
548 |
tagctt |
553 |
Q |
| |
|
|||||| |
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|
| T |
28028793 |
tagctt |
28028798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 371
Target Start/End: Original strand, 4696734 - 4696832
Alignment:
| Q |
273 |
cttgcgaacaacaggtggtatgatgtgttcccaaatgcacaattggaaaatttagtaacacttgcatctgatcactatcctatattgttgaatcttgaa |
371 |
Q |
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||||||||||| ||||| ||| || |||||||||||||||||||||| ||| ||| | ||| ||||| ||||||||| ||| || |||||||||||| |
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| T |
4696734 |
cttgcgaacaaagggtggcatgcggtcttcccaaatgcacaattggaaattttggtagctcttacatcttatcactatcttatcttattgaatcttgaa |
4696832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 565 - 650
Target Start/End: Original strand, 31004055 - 31004143
Alignment:
| Q |
565 |
aattaattgattaactataaactatgaatacaatgctattgattac---ttttcaatacttttgatcaaaatagttagaccaatgtctt |
650 |
Q |
| |
|
|||||||||| |||| | |||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||| ||||||||| |
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| T |
31004055 |
aattaattgagtaacaacaaactatgaatacaatgctacttattacttgttttcaatacatttgatcaaaatagttagttcaatgtctt |
31004143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 583 - 639
Target Start/End: Complemental strand, 17850449 - 17850390
Alignment:
| Q |
583 |
aaactatgaatacaatgctattgattact---tttcaatacttttgatcaaaatagttag |
639 |
Q |
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|||||||||||| |||||||||||||||| ||| ||||| ||||| |||||||||||| |
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| T |
17850449 |
aaactatgaatataatgctattgattactcgattttaatacctttgaacaaaatagttag |
17850390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 479 - 536
Target Start/End: Original strand, 31003848 - 31003908
Alignment:
| Q |
479 |
actagcaaatgtactagtgtgtc--caagtagtaatatttata-aaaagagtttgtttcca |
536 |
Q |
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||||||||||||| ||||||||| ||||||||||||||| || |||||||||||||||| |
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| T |
31003848 |
actagcaaatgtattagtgtgtcgtcaagtagtaatatttctatgaaagagtttgtttcca |
31003908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 615 - 656
Target Start/End: Original strand, 19840747 - 19840788
Alignment:
| Q |
615 |
caatacttttgatcaaaatagttagaccaatgtcttggtcac |
656 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| |
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| T |
19840747 |
caatacttttgaacaaaatagttaggccaatgtcttggtcac |
19840788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 592 - 656
Target Start/End: Original strand, 20996634 - 20996701
Alignment:
| Q |
592 |
atacaatgctattgattactt---ttcaatacttttgatcaaaatagttagaccaatgtcttggtcac |
656 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||||| ||||||| ||| |||||||||||||||| |
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| T |
20996634 |
atacaatgctactgattacttgatttcaatacctttgaacaaaataagtaggccaatgtcttggtcac |
20996701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 566 - 612
Target Start/End: Original strand, 12673052 - 12673098
Alignment:
| Q |
566 |
attaattgattaactataaactatgaatacaatgctattgattactt |
612 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
12673052 |
attatttgagtaactataaactatgaatataatgttattgattactt |
12673098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 656
Target Start/End: Complemental strand, 16802349 - 16802278
Alignment:
| Q |
588 |
atgaatacaatgctattgattactt---ttcaatacttttgatcaaaatagttagaccaatgtcttggtcac |
656 |
Q |
| |
|
|||||||||||| |||||||||||| || || || ||||| |||||||| ||||||||||||||||||| |
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| T |
16802349 |
atgaatacaatgttattgattacttgattttaaaacctttgaataaaatagtcagaccaatgtcttggtcac |
16802278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 656
Target Start/End: Complemental strand, 16841635 - 16841564
Alignment:
| Q |
588 |
atgaatacaatgctattgattactt---ttcaatacttttgatcaaaatagttagaccaatgtcttggtcac |
656 |
Q |
| |
|
|||||||||||| |||||||||||| || || || ||||| |||||||| ||||||||||||||||||| |
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| T |
16841635 |
atgaatacaatgttattgattacttgattttaaaacctttgaataaaatagtcagaccaatgtcttggtcac |
16841564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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