View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_10 (Length: 404)
Name: NF12331_low_10
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 28641590 - 28641218
Alignment:
| Q |
20 |
gctttatcggagtatactccgtgcgaggacacgcagcgatcgttgaaatttcctcgggagaatttaatttatcgagagagacactgtccggaaaaagagg |
119 |
Q |
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| T |
28641590 |
gctttatcggagtatactccgtgcgaggacacacagcgatcgttgaaatttcctcgggagaatttaatttatcgagagagacactgtccggaaaaagagg |
28641491 |
T |
|
| Q |
120 |
aggttctccggtgtcggataccggcaccgtatggctaccgcgttccgccgcggtggccggagagccgtgattgggcttggtatgctaatgtgccacataa |
219 |
Q |
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| T |
28641490 |
aggttctccggtgtcggataccggcaccgtatggctaccgcgttccgccgcggtggccggagagccgtgattgggcttggtatgctaatgtgccacataa |
28641391 |
T |
|
| Q |
220 |
agaattgacgattgagnnnnnnnnccagaattgggttcattttgaaggtgaccggttcaggtttcctggtggtgggactatgtttccacgtggcgctggt |
319 |
Q |
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| T |
28641390 |
agaattgacgattgagaaaaaaaaccagaattgggttcattttgaaggtgaccggttcaggtttcctggtggtgggaccatgtttccacgtggcgctggt |
28641291 |
T |
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| Q |
320 |
gcatacattgacgatatcggaaaactcatcaaccttaaagatgggtccgtccgaaccgctttagacacaggtt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
28641290 |
gcatacattgacgatatcggaaaactcatcaaccttaaagatgggtccgtccggaccgctttagacaccggtt |
28641218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 379
Target Start/End: Complemental strand, 12404600 - 12404391
Alignment:
| Q |
170 |
cggtggccggagagccgtgattgggcttggtatgctaatgtgccacataaagaattgacgattgagnnnnnnnnccagaattgggttcattttgaaggtg |
269 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| |||||||| || || || | ||| |||||||||||| | || | || |
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| T |
12404600 |
cggtggccggagagccgtgacggggcttggtatgcaaatgttccacataaggagttaaccgtggagaagaaaaaccagaattgggtccggttcaatggga |
12404501 |
T |
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| Q |
270 |
accggttcaggtttcctggtggtgggactatgtttccacgtggcgctggtgcatacattgacgatatcggaaaactcatcaaccttaaagatgggtccgt |
369 |
Q |
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|||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||| ||||| || || | || || |||||||||||||| | |
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| T |
12404500 |
accgattcaggtttccgggtggtgggaccatgtttccacgtggcgcaaatgcatacgttgatgatattgggaagttgattaatcttaaagatgggtctat |
12404401 |
T |
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| Q |
370 |
ccgaaccgct |
379 |
Q |
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| T |
12404400 |
cagaaccgct |
12404391 |
T |
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