View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_11 (Length: 363)
Name: NF12331_low_11
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_11 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 49233604 - 49233310
Alignment:
| Q |
18 |
taatgaaaaggcacttgaggtaactaaaatagcagataattttggatcagtcatttatatgtgagcaaaaattgtgatatttatacgagttcatggtcct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
49233604 |
taatgaaaaggcacttgaggtaactaaaatagcagataattttggatcagtcatttatatgtgagcaaaaattgtgatatttacacgagttcctggtcct |
49233505 |
T |
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| Q |
118 |
ttgcagaaccctgtaatcgagagtgcagattcaaccatttctgacaataggcagagtgataataaccaaaccgtcattgagaccaaccgtgtagcaaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49233504 |
ttgcagaaccctgtaatcgagagtgcagattcaaccaagtctgacaataggcagagtgataataaccaaaccgtcattgagactaaccgtgtagcaaatt |
49233405 |
T |
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| Q |
218 |
aagtggcaaagagatcgttgatattgtaggctctaccaaagcttggaactgaattgggggataactcaacctacaaaacacggaaagtgaaatgca |
313 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49233404 |
aagtggcaagcagatcgttgatattgtaggctctacc-aagcttggaactgaattgggggataactcaacctacaaaacacggaaagtgaaatgca |
49233310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 50862874 - 50863209
Alignment:
| Q |
18 |
taatgaaaaggcacttgaggtaactaaaatagcagataattttggatcagtcatttatatgtgagcaaaaattgtgatatttatacgagttcatggtcct |
117 |
Q |
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||||||||| ||||||||||| |||||||||||||| |||| ||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
50862874 |
taatgaaaatgcacttgaggtggctaaaatagcagatgattt-ggatcagacatttatatgtgcgctaaaattgtgatatttatacgagttcctggtcct |
50862972 |
T |
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| Q |
118 |
ttgcagaaccctgtaatcgagagtgcagattcaaccatttctgacaataggcagagtgataataaccaaaccgtcattgagacca-accgtgtagcaaat |
216 |
Q |
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|||||||||||| ||||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
50862973 |
ttgcagaaccctataatcgagagtgcggattcaaccaagtctgacaacaggcagggtgataataaccaaaccgtcattgagactacaccgtgtagcaaat |
50863072 |
T |
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| Q |
217 |
taagtggcaaagagatcgttgatattgtaggctctaccaaagcttggaactgaattgggggataactcaacctacaaaacacggaaagtgaaatgcaata |
316 |
Q |
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|||||||||| || |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50863073 |
taagtggcaagcggaccgttgacattgtaggcccta--aaagcttggaactgaattgggggataactcaacctacaaaacacggaaagtgaaatgcacta |
50863170 |
T |
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| Q |
317 |
aggttgagaaggattagtttgaaaagctatgtctctgct |
355 |
Q |
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| T |
50863171 |
aggttgagaaggattagtttgaaaagctatgtgtctgct |
50863209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 174 - 355
Target Start/End: Original strand, 20453 - 20634
Alignment:
| Q |
174 |
tgataataaccaaaccgtcattgagacca-accgtgtagcaaattaagtggcaaagagatcgttgatattgtaggctctaccaaagcttggaactgaatt |
272 |
Q |
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||||||||||||||||||||||||||| | | |||||||||||||||||| ||| || ||||| ||||||||| ||||||| ||||||||||| ||| |
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| T |
20453 |
tgataataaccaaaccgtcattgagactacatcgtgtagcaaattaagtgacaagcggaccgttgccattgtaggccctaccaa-gcttggaactgtatt |
20551 |
T |
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| Q |
273 |
gggggataactcaacctacaaaacacggaaagtgaaatgcaataaggttgagaaggattagtttgaaaagctatgtctctgct |
355 |
Q |
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| T |
20552 |
gggggataactcaacctacaaaacacggaaagtgaagtgcactaaggttgagaaggattagtttgaaaagctatgtctctgct |
20634 |
T |
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