View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12331_low_14 (Length: 312)

Name: NF12331_low_14
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12331_low_14
NF12331_low_14
[»] chr4 (32 HSPs)
chr4 (1-296)||(2003938-2004233)
chr4 (4-156)||(41262234-41262386)
chr4 (1-156)||(52204877-52205032)
chr4 (16-159)||(18315979-18316122)
chr4 (21-159)||(29227129-29227267)
chr4 (16-160)||(5386414-5386558)
chr4 (64-160)||(10146974-10147070)
chr4 (49-159)||(1816562-1816672)
chr4 (16-159)||(39158147-39158290)
chr4 (63-160)||(22813607-22813704)
chr4 (18-158)||(55266069-55266209)
chr4 (4-159)||(51255776-51255931)
chr4 (6-159)||(51577646-51577799)
chr4 (36-152)||(2738161-2738277)
chr4 (4-115)||(36130283-36130394)
chr4 (4-115)||(5932694-5932805)
chr4 (63-158)||(50506478-50506572)
chr4 (15-154)||(54000739-54000878)
chr4 (46-159)||(38519865-38519978)
chr4 (67-159)||(19651805-19651897)
chr4 (4-159)||(14443228-14443383)
chr4 (4-89)||(37297078-37297163)
chr4 (16-103)||(149427-149514)
chr4 (4-89)||(39440513-39440598)
chr4 (18-158)||(26600086-26600226)
chr4 (82-157)||(21014105-21014180)
chr4 (4-102)||(37997285-37997381)
chr4 (16-99)||(40348835-40348918)
chr4 (4-102)||(10250459-10250557)
chr4 (4-102)||(31574883-31574981)
chr4 (4-89)||(36177935-36178020)
chr4 (49-89)||(31641522-31641562)
[»] chr5 (22 HSPs)
chr5 (4-156)||(42446180-42446332)
chr5 (4-155)||(13089672-13089823)
chr5 (4-158)||(611894-612048)
chr5 (16-157)||(21210860-21211001)
chr5 (37-158)||(16971987-16972108)
chr5 (50-158)||(31748412-31748520)
chr5 (4-160)||(32872783-32872939)
chr5 (54-157)||(39195824-39195927)
chr5 (6-159)||(17097689-17097841)
chr5 (49-154)||(12739847-12739951)
chr5 (49-154)||(12802670-12802774)
chr5 (41-155)||(19981876-19981990)
chr5 (45-99)||(32478442-32478496)
chr5 (4-89)||(19521960-19522045)
chr5 (36-102)||(5168244-5168310)
chr5 (16-102)||(33037561-33037647)
chr5 (16-78)||(39195759-39195821)
chr5 (16-89)||(22649618-22649691)
chr5 (49-102)||(35646457-35646510)
chr5 (49-154)||(36562944-36563049)
chr5 (16-89)||(36738989-36739062)
chr5 (16-160)||(11954473-11954617)
[»] chr2 (20 HSPs)
chr2 (4-156)||(18510705-18510857)
chr2 (6-149)||(39234076-39234219)
chr2 (4-159)||(37316701-37316856)
chr2 (4-158)||(37731087-37731241)
chr2 (4-159)||(11965823-11965978)
chr2 (22-155)||(30831802-30831935)
chr2 (36-160)||(31578496-31578620)
chr2 (6-158)||(32944391-32944543)
chr2 (1-160)||(26480975-26481134)
chr2 (54-159)||(14871951-14872056)
chr2 (16-159)||(36587357-36587498)
chr2 (63-158)||(1079010-1079105)
chr2 (36-155)||(8847549-8847669)
chr2 (54-159)||(14877069-14877174)
chr2 (63-158)||(44239125-44239220)
chr2 (1-145)||(43057091-43057235)
chr2 (16-103)||(19916697-19916784)
chr2 (4-87)||(9990720-9990803)
chr2 (6-81)||(32477363-32477438)
chr2 (36-155)||(36417289-36417408)
[»] chr7 (22 HSPs)
chr7 (1-156)||(33057406-33057561)
chr7 (16-158)||(32777594-32777736)
chr7 (4-158)||(13152622-13152777)
chr7 (4-159)||(33845072-33845227)
chr7 (16-159)||(34978338-34978481)
chr7 (16-155)||(43081780-43081919)
chr7 (36-158)||(37352172-37352294)
chr7 (4-160)||(12007071-12007227)
chr7 (36-160)||(45419946-45420070)
chr7 (39-159)||(15325526-15325646)
chr7 (64-155)||(28249460-28249551)
chr7 (54-158)||(29723812-29723916)
chr7 (54-158)||(2008719-2008823)
chr7 (4-103)||(47448856-47448955)
chr7 (49-155)||(21103087-21103193)
chr7 (16-158)||(43807700-43807842)
chr7 (21-160)||(27570390-27570529)
chr7 (49-159)||(26749079-26749189)
chr7 (2-79)||(40854621-40854698)
chr7 (9-158)||(46880937-46881086)
chr7 (93-158)||(8904348-8904413)
chr7 (4-60)||(2008843-2008899)
[»] chr8 (25 HSPs)
chr8 (4-149)||(4672021-4672166)
chr8 (16-158)||(44090928-44091070)
chr8 (4-160)||(33451450-33451604)
chr8 (4-160)||(1068636-1068792)
chr8 (4-159)||(25987673-25987828)
chr8 (37-159)||(15716862-15716984)
chr8 (4-158)||(34435624-34435778)
chr8 (41-158)||(37172127-37172244)
chr8 (6-160)||(44061749-44061903)
chr8 (4-150)||(44825472-44825618)
chr8 (54-159)||(28772012-28772117)
chr8 (36-159)||(12241134-12241257)
chr8 (4-159)||(26026926-26027081)
chr8 (36-159)||(33107753-33107876)
chr8 (39-158)||(9630188-9630307)
chr8 (4-157)||(2730849-2731002)
chr8 (4-129)||(5600903-5601028)
chr8 (4-129)||(5639592-5639717)
chr8 (36-157)||(36874001-36874120)
chr8 (18-149)||(45405880-45406011)
chr8 (4-102)||(31249468-31249566)
chr8 (4-79)||(10731575-10731650)
chr8 (4-102)||(22719469-22719567)
chr8 (4-102)||(32501140-32501238)
chr8 (73-153)||(34476255-34476335)
[»] scaffold0618 (1 HSPs)
scaffold0618 (16-158)||(8840-8982)
[»] chr3 (29 HSPs)
chr3 (36-158)||(34307428-34307550)
chr3 (16-159)||(4494123-4494266)
chr3 (37-159)||(31104727-31104849)
chr3 (4-159)||(41443077-41443232)
chr3 (54-156)||(25188313-25188416)
chr3 (36-150)||(9692787-9692901)
chr3 (4-158)||(34456820-34456974)
chr3 (70-159)||(39099413-39099502)
chr3 (36-155)||(39713927-39714046)
chr3 (10-159)||(33472305-33472454)
chr3 (36-159)||(32362995-32363116)
chr3 (46-160)||(32145871-32145985)
chr3 (4-60)||(25188450-25188506)
chr3 (16-154)||(38671659-38671797)
chr3 (1-118)||(34064033-34064150)
chr3 (53-165)||(29525942-29526054)
chr3 (36-102)||(5114139-5114205)
chr3 (4-102)||(20547934-20548032)
chr3 (4-102)||(41505520-41505618)
chr3 (49-102)||(41309191-41309244)
chr3 (4-88)||(6178383-6178467)
chr3 (7-103)||(8502833-8502929)
chr3 (16-160)||(27168567-27168711)
chr3 (65-103)||(20221570-20221608)
chr3 (16-102)||(27541446-27541532)
chr3 (16-102)||(38926669-38926755)
chr3 (16-102)||(52254082-52254168)
chr3 (16-77)||(7668156-7668217)
chr3 (37-150)||(9862596-9862709)
[»] chr6 (13 HSPs)
chr6 (4-158)||(8645338-8645492)
chr6 (1-159)||(5739650-5739808)
chr6 (4-160)||(8505658-8505815)
chr6 (4-155)||(18064980-18065131)
chr6 (4-159)||(33712350-33712505)
chr6 (63-167)||(14910265-14910368)
chr6 (54-159)||(1286993-1287098)
chr6 (4-159)||(11635421-11635576)
chr6 (48-158)||(17182172-17182282)
chr6 (63-131)||(10375743-10375812)
chr6 (49-102)||(20998089-20998142)
chr6 (63-103)||(3772444-3772484)
chr6 (6-102)||(26595380-26595476)
[»] chr1 (21 HSPs)
chr1 (16-154)||(7918953-7919091)
chr1 (4-158)||(48858853-48859007)
chr1 (63-158)||(5771631-5771726)
chr1 (16-159)||(40439726-40439869)
chr1 (6-159)||(4213104-4213257)
chr1 (36-151)||(4857972-4858087)
chr1 (6-159)||(47642493-47642646)
chr1 (36-158)||(38878788-38878910)
chr1 (4-103)||(17082685-17082784)
chr1 (4-159)||(48983554-48983709)
chr1 (4-160)||(27742647-27742795)
chr1 (49-159)||(42468667-42468777)
chr1 (4-89)||(35369729-35369814)
chr1 (4-102)||(649798-649896)
chr1 (18-148)||(23332313-23332443)
chr1 (4-89)||(37685360-37685443)
chr1 (4-89)||(37700075-37700158)
chr1 (36-102)||(35529323-35529389)
chr1 (49-103)||(41070897-41070951)
chr1 (16-89)||(33100849-33100922)
chr1 (49-102)||(45333785-45333838)
[»] scaffold0201 (1 HSPs)
scaffold0201 (16-158)||(8514-8656)
[»] scaffold0276 (1 HSPs)
scaffold0276 (3-158)||(1673-1828)
[»] scaffold0128 (1 HSPs)
scaffold0128 (4-160)||(10966-11120)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-159)||(6406-6564)
[»] scaffold0034 (1 HSPs)
scaffold0034 (4-156)||(101790-101947)
[»] scaffold0184 (1 HSPs)
scaffold0184 (39-158)||(13444-13563)
[»] scaffold0078 (1 HSPs)
scaffold0078 (39-158)||(59281-59400)
[»] scaffold0110 (1 HSPs)
scaffold0110 (6-77)||(28295-28366)
[»] scaffold0002 (1 HSPs)
scaffold0002 (49-89)||(469594-469634)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 2004233 - 2003938
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    ||||||||||||||||||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2004233 ttaacaacttttgcaacaactttctatctcttactcacattgcccttctactttctctctacattgctttgatttttgtatcactacctaaatttcttta 2004134  T
Q  101 tattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctctagaatataacatttgcttcaactccaaactaaaacatcttc 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2004133 tattatttgattgtctaataggttatcacaagaaaaggttgttcaaataacattgctctagagtataacatttgcttcaactccaaactaaaacatcttc 2004034  T
Q  201 cgtagttacatataaagaaaattacttttttcactttggtactgcaaataacaaagttgattggagtacaactgtgaacatgagatataagtaaaa 296  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2004033 cgtagttacatataaagaaaattacttctttcactttgatactgcaaataacaaagttgattggagtacaactgtgaacatgagatataagtaaaa 2003938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 41262386 - 41262234
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||  |||||||||||||||||  || || ||||||||||||||||    
T  41262386 acaatttttgcaacaattttctctctcttactcacattgtccttctactttctttctctattgctttgatttttgtgccattatctaaatttctttgtat 41262287  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgc 156  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||||||||||    
T  41262286 tatttggttgtctaataggttgtcacaagaaaaggttgttcaaataacattgc 41262234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 52204877 - 52205032
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    ||||||| |||||  | |||||||||| |  ||| ||||||||  |||||||||||||||  ||||||||||||||||| ||||||| |||||||||||     
T  52204877 ttaacaatttttgttataattttctctttcatactcacattgtttttctactttctctctctattgctttgatttttgtgtcactacttaaatttctttt 52204976  T
Q  101 tattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgc 156  Q
    ||| ||||| ||||| || | ||||||| ||||||||||||||||||||| |||||    
T  52204977 tataatttggttgtccaacaagttatcataagaaaagattgttcaaataatattgc 52205032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 18315979 - 18316122
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||| ||| |||||  || || |||||||||| |  ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  18315979 acaactttctctcttatactcacatcatcattttactttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtc 18316078  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || | ||| ||| |||||| | |||||||||||||||||||||    
T  18316079 caacaagttgtcataagaaatggttgttcaaataacattgctct 18316122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 29227267 - 29227129
Alignment:
Q  21 tttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaata 120  Q
    |||||||||  ||| |||||||| ||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||| || || ||||| || |    
T  29227267 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttctttgtataatatggttgtccaaca 29227168  T
Q  121 ggttatcacaagaaaagattgttcaaataacattgctct 159  Q
      || |||||  ||||| |||||||||||||||||||||    
T  29227167 aattgtcacataaaaaggttgttcaaataacattgctct 29227129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 5386414 - 5386558
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| |||||| | ||| ||||||||||||  ||||||||||||||||| | |||| |||||||||||||||| ||||  |||||    
T  5386414 acaactttctctctcatactcacattattcttttactttctctctctattgctttgatttttgtgttactatctaaatttctttgtataatttagttgtc 5386513  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
    ||| | ||| |||||||||| | ||||||||||| ||||||||||    
T  5386514 taaaaagttgtcacaagaaatggttgttcaaatatcattgctcta 5386558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 10147070 - 10146974
Alignment:
Q  64 ttgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || | |||||||||||||| ||||||| |||||||||| |||||    
T  10147070 ttgcttttatttttgtgtcactacctaaatttctttgtataatttgattgtccaacaagttatcacaagaaatgattgtttaaataacattactcta 10146974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 1816672 - 1816562
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaat 148  Q
    |||||| |||||  ||||||||||||||||| ||||||||||| ||| ||| ||| |||| ||||||||| || ||||||||||||| ||||||||| ||    
T  1816672 tactttatctctctattgctttgatttttgtgtcactacctaattttttttatataatttaattgtctaaaagattatcacaagaaatgattgttcatat 1816573  T
Q  149 aacattgctct 159  Q
    |||||||||||    
T  1816572 aacattgctct 1816562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 39158147 - 39158290
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| |||||| | |||||||||||||| |  |||| |||| |||||||  | |||||||||||||||||||| ||||| |||||    
T  39158147 acaactttctctctcatactcacattattcttctactttctctttctattgttttggtttttgtgccgctacctaaatttctttgtataatttggttgtc 39158246  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     |||| ||| |||||| ||| | |||||||||||||||||||||    
T  39158247 caataagttgtcacaataaatggttgttcaaataacattgctct 39158290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 22813704 - 22813607
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
    ||||||||||||||||| ||||||||||||||||||| ||| |||| |||||| || | ||| |||||||||||  ||||| ||||||||||||||||    
T  22813704 attgctttgatttttgtgtcactacctaaatttctttatataatttaattgtccaacaagttgtcacaagaaaaagttgtttaaataacattgctcta 22813607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 55266069 - 55266209
Alignment:
Q  18 aattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtcta 117  Q
    ||||||||||||  ||  |||||||||||| ||||||||||||  ||| ||||||||||||| |||||| ||||||   ||| ||| ||||  |||| ||    
T  55266069 aattttctctctcatattcacattgtccttttactttctctctttattactttgatttttgtgtcactatctaaatccatttatataatttagttgtata 55266168  T
Q  118 ataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    | | |||||||||| ||| ||||||||||||||||||||||    
T  55266169 agaagttatcacaataaaggattgttcaaataacattgctc 55266209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 51255776 - 51255931
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||  |  |||||||||||||||  |||||||||||||||||  ||||| |||||||||||||||     
T  51255776 acaacttttgtgacaactttctctctcatactcacatgattattctactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaa 51255875  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     ||||| ||||| || | ||| |||||| ||| | |||| ||||||||||||||||    
T  51255876 aatttggttgtccaacaagttgtcacaataaatggttgtacaaataacattgctct 51255931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 51577646 - 51577799
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtatta 105  Q
    ||||||||  |||| |||||||||  ||| || ||| || || ||||||||||||  |||||||||||||||||  |||||||||||||||||| ||| |    
T  51577646 aacttttgtgacaactttctctctcatactcatattatcattttactttctctctctattgctttgatttttgtgccactacctaaatttctttatataa 51577745  T
Q  106 tttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    |||  ||||| || ||||| |||||||||| | || |||||||| || ||||||    
T  51577746 tttagttgtccaaaaggttgtcacaagaaatggttattcaaatatcactgctct 51577799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 2738277 - 2738161
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||| || |||||||||||||||  ||| |||||||| ||||  ||| ||||||| |||||||||| |||| |||||| || ||||| ||||||||||    
T  2738277 cacattatctttctactttctctctctatttctttgattgttgtgccacaacctaaaattctttgtataatttaattgtccaaaaggttgtcacaagaaa 2738178  T
Q  136 agattgttcaaataaca 152  Q
     ||||||| ||||||||    
T  2738177 tgattgtttaaataaca 2738161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 36130394 - 36130283
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| ||| |||||  ||| |||||||| |||||||||| |||||  ||||| ||||||||||| ||| |||||||||||||||||||    
T  36130394 acaacttttgtgacaactttatctctcatacacacattgttcttctactttttctctctattgccttgatttttgtgtcattacctaaatttctttgtat 36130295  T
Q  104 tatttgattgtc 115  Q
     || ||||||||    
T  36130294 aatgtgattgtc 36130283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 5932805 - 5932694
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||| ||||| || | ||||| |  |||| |||||||||||| |||||||||||||||||||||||    
T  5932805 acaacttttgtgacaactttctctctcatactcacattatccttttagtgtctctatctattgttttgatttttgtgtcactacctaaatttctttgtat 5932706  T
Q  104 tatttgattgtc 115  Q
     |||| ||||||    
T  5932705 aatttaattgtc 5932694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 50506478 - 50506572
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    |||||||||||||| ||  |||||||||||||||||||||| ||||  ||||| || ||||| ||||||||||   ||||||||||||||||||||    
T  50506478 attgctttgatttt-gtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatagttgttcaaataacattgctc 50506572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 54000739 - 54000878
Alignment:
Q  15 aacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgt 114  Q
    ||||| |||||||||  ||| |||||| || || ||||||||||||  |||||||  |||| |||  |||||||||||||||||||||| ||||  ||||    
T  54000739 aacaactttctctctcatactcacattatcattttactttctctctctattgcttaaatttgtgtgccactacctaaatttctttgtataatttagttgt 54000838  T
Q  115 ctaataggttatcacaagaaaagattgttcaaataacatt 154  Q
    | || ||||| |||||| |||   ||||||||||||||||    
T  54000839 ccaaaaggttgtcacaataaatagttgttcaaataacatt 54000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 38519865 - 38519978
Alignment:
Q  46 ttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttca 145  Q
    |||||||||||||||  |||||||||||||||||  |||||  ||||||||||||||  ||||| ||||| || | ||| |||||| ||| | || | ||    
T  38519865 ttctactttctctctctattgctttgatttttgtgccactatttaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttataca 38519964  T
Q  146 aataacattgctct 159  Q
    ||||||||||||||    
T  38519965 aataacattgctct 38519978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 19651897 - 19651805
Alignment:
Q  67 ctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    ||||||||||| | ||||||||||||||||||||||| ||||  ||||| || ||||| |||||| ||| | ||||||||||| |||| ||||    
T  19651897 ctttgatttttatgtcactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaaaaaatggttgttcaaatatcattactct 19651805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 14443228 - 14443383
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  ||||||||||||||  |||  | ||| |  || ||||||||||||  |||||||| ||||||    ||||||||||||| ||||||||    
T  14443228 acaacttttgtgacaattttctctctcatacttatattattattttactttctctctctattgctttaatttttacgccactacctaaattcctttgtat 14443327  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     ||||  ||||| || ||||| |||||| ||| | ||||||||||| |||||||||    
T  14443328 aatttagttgtccaaaaggttgtcacaaaaaatggttgttcaaatatcattgctct 14443383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 37297078 - 37297163
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||  ||||||||||||||  ||| |||||| || || ||||||||||||  ||||||||| ||||||| |||||||||    
T  37297078 acaacttttgtgacaattttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacct 37297163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 149514 - 149427
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||| |||||||||  ||| |||||| |  ||| |||||||||||  ||||||||  ||||||| |||||||||||||||||||||||    
T  149514 acaactttctctctcatactcacattatgtttcaactttctctctctattgctttagtttttgtgtcactacctaaatttctttgtat 149427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 39440513 - 39440598
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||  | |||||||||| |  ||| |||||| || || ||||||||||||  ||||||||||||||||| |||||||||    
T  39440513 acaacttttgtgataattttctctttcatactcacattttcattttactttctctctctattgctttgatttttgtgtcactacct 39440598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 26600226 - 26600086
Alignment:
Q  18 aattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtcta 117  Q
    ||||||||||||  ||| |||||||| |||||||||||| |||  |||||||| ||| ||||  ||||| |||| | | ||||||| || || ||||| |    
T  26600226 aattttctctctcatacacacattgttcttctactttctttctctattgcttttattattgtgccactatctaattctttttgtataatgtggttgtcca 26600127  T
Q  118 ataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    | |  || |||||  ||||  ||||||||||||||||||||    
T  26600126 acaaattgtcacataaaaatgttgttcaaataacattgctc 26600086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 21014105 - 21014180
Alignment:
Q  82 cactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgct 157  Q
    ||||| ||||||  |||||||| ||||| |||| ||| | ||| |||||| ||||| |||||||||||||||||||    
T  21014105 cactatctaaatccctttgtataatttggttgtataagaagttgtcacaataaaaggttgttcaaataacattgct 21014180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 37997285 - 37997381
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  |||| |||||||| |  || |||||| || || ||||||||||||  ||||||||||||||||| ||| ||||| | ||||||||||    
T  37997285 acaacttttgtgacaactttctctcat--actcacattatctttttactttctctctctattgctttgatttttgtgtcaatacctcattttctttgta 37997381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 40348835 - 40348918
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttcttt 99  Q
    ||||||||||||||  ||| |||||| || || ||||||||||||  ||||||||| ||||||| |||||| || | |||||||    
T  40348835 acaattttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactatctcattttcttt 40348918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 10250557 - 10250459
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || ||||||||||||  ||||||||| |||||||  |||||| | | ||||||||||    
T  10250557 acaacttttgtgacaactttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccactacttcattttctttgta 10250459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 31574981 - 31574883
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  | ||||||||||||  ||| |||||| |  || || |||||||||  ||||||||||||||||||||| ||| | | ||||||||||    
T  31574981 acaacttttgtgataattttctctctcatactcacattatatttttattttctctctctattgctttgatttttgtatcaatacatgattttctttgta 31574883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 36177935 - 36178020
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||   |||||||||||||  ||| |||||| || || |||||||| |||  ||||||||| |||||||| ||||||||    
T  36177935 acaacttttgtcgcaattttctctctcatactcacattatctttttactttctttctctattgctttggtttttgtaccactacct 36178020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 31641562 - 31641522
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacct 89  Q
    |||||||| ||| |||||||||||||||||| |||||||||    
T  31641562 tactttctgtctccattgctttgatttttgtgtcactacct 31641522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 42446332 - 42446180
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||  |||||||||||||||||  || |||||||||||||||||||    
T  42446332 acaacttttgcaacaactttctctctcttactcacattgtccttctactttttctctctattgctttgatttttgtgccattacctaaatttctttgtat 42446233  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgc 156  Q
    |||||| |||||||||||||| |||||||||||  ||||||||||||||||||    
T  42446232 tatttggttgtctaataggttgtcacaagaaaatgttgttcaaataacattgc 42446180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 13089823 - 13089672
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| ||||||| |  ||| |||||| || ||||||||| |||||  ||||||||||||||||| |||||||||||||||||||||||    
T  13089823 acaacttttgtgacaactttctctttcatactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtat 13089724  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattg 155  Q
     |||| |||||  || ||||| ||| |||||| | |||||||||||||||||    
T  13089723 aatttaattgttcaaaaggttgtcataagaaatggttgttcaaataacattg 13089672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 611894 - 612048
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || || |||||||||  | ||||||||||||||| |||||||||||||||||||||||    
T  611894 acaacttttgtgacaactttctctctcatactcacattatcattttattttctctctctactgctttgatttttgtgtcactacctaaatttctttgtat 611993  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     ||||  |||||||| ||||| |||| |||||  ||| |||| ||||||||||||    
T  611994 aatttagttgtctaaaaggttgtcacgagaaattatttttcatataacattgctc 612048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 21210860 - 21211001
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| |||||| | ||||||||||||||||  |||||||| |||||||||  ||||||||||||||||||||| || || ||||     
T  21210860 acaactttctctctcatacacacattattcttctactttctctctctattgctttaatttttgtactactacctaaatttctttgtataatgtggttgtt 21210959  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgct 157  Q
     |||| ||| |||||  ||||| |||||||||||||||||||    
T  21210960 caataagttgtcacataaaaaggttgttcaaataacattgct 21211001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 16972108 - 16971987
Alignment:
Q  37 acattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaa 136  Q
    ||||||| ||||||||||||||||  ||| ||||||||||||| ||| |  ||||||  |||||||| |||||||||| ||| | ||| |||||| |||     
T  16972108 acattgttcttctactttctctctctattactttgatttttgtgtcagtctctaaatccctttgtataatttgattgtataagaagttgtcacaataaat 16972009  T
Q  137 gattgttcaaataacattgctc 158  Q
    ||||||||||||||||||||||    
T  16972008 gattgttcaaataacattgctc 16971987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 31748412 - 31748520
Alignment:
Q  50 actttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaata 149  Q
    ||||||||| |  |||||||||||||||||   || |||||||||||||||||| ||||||||||| |||| ||| |||||| ||| |||||||||||||    
T  31748412 actttctctatctattgctttgatttttgtgctacaacctaaatttctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaata 31748511  T
Q  150 acattgctc 158  Q
    |||| ||||    
T  31748512 acatcgctc 31748520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 32872939 - 32872783
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||||||||| | |  ||| |||||||| ||  |||||||| | |  |||||||||| |||||| | ||||||||||||||||| |||    
T  32872939 acaacttttgtgacaattttctttttcatactcacattgttctcatactttctttttctattgctttgacttttgtgttactacctaaatttctttttat 32872840  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
      |||||||||| || | ||| |||||||||| | ||||||||||||||||||||||    
T  32872839 attttgattgtccaacaagttgtcacaagaaagggttgttcaaataacattgctcta 32872783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 39195824 - 39195927
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |  || |||||  |||| ||||||||||||||||    
T  39195824 tctctctctattgctttgatttttgtatcactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaaattgttcaaataacat 39195923  T
Q  154 tgct 157  Q
    ||||    
T  39195924 tgct 39195927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 17097841 - 17097689
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtatta 105  Q
    ||||||||  |||||||||| |||  ||| ||||||||| ||||||||||||| |  ||| ||||||||||||| ||||||||||| ||||||||||| |    
T  17097841 aacttttgtgacaattttctatctcatactcacattgtcattctactttctctttctattactttgatttttgtgtcactacctaattttctttgtataa 17097742  T
Q  106 tttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    |||  ||||| || |  || |||||||||| |  ||||||||||||||| ||||    
T  17097741 tttagttgtccaacaaattgtcacaagaaatg-gtgttcaaataacattactct 17097689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 12739847 - 12739951
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaat 148  Q
    ||||||||||||  |||||||||||||||||    |||||||||||||||||||| ||||| ||||| || |  |||||| || |||| |||||||||||    
T  12739847 tactttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 12739945  T
Q  149 aacatt 154  Q
    ||||||    
T  12739946 aacatt 12739951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 12802670 - 12802774
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaat 148  Q
    ||||||||||||  |||||||||||||||||    |||||||||||||||||||| ||||| ||||| || |  |||||| || |||| |||||||||||    
T  12802670 tactttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 12802768  T
Q  149 aacatt 154  Q
    ||||||    
T  12802769 aacatt 12802774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 19981990 - 19981876
Alignment:
Q  41 tgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagatt 140  Q
    |||||||||||||||||| |  ||| |||||||||||||  ||||| |||||||| ||||||| |||| |||||| || |  || ||| |||||||  ||    
T  19981990 tgtccttctactttctctttctattactttgatttttgtgccactatctaaatttttttgtataatttaattgtccaacaaattgtcataagaaaatgtt 19981891  T
Q  141 gttcaaataacattg 155  Q
    ||| |||||||||||    
T  19981890 gtttaaataacattg 19981876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 32478496 - 32478442
Alignment:
Q  45 cttctactttctctctacattgctttgatttttgtatcactacctaaatttcttt 99  Q
    |||||| |||||||||  ||||||||||||||| | |||||||||||||||||||    
T  32478496 cttctattttctctctctattgctttgatttttatgtcactacctaaatttcttt 32478442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 19522045 - 19521960
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||  |||| ||||||| |  ||| |||||| || || ||||||||||||  ||||||||||||||||| |||||||||    
T  19522045 acaacttttgtgacaactttctctttcatactcacattatctttttactttctctctctattgctttgatttttgtgtcactacct 19521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 5168244 - 5168310
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||||| || || ||||||||||||  |||||||||||||||||  |||||||| | ||||||||||    
T  5168244 cacattatctttttactttctctctctattgctttgatttttgtgccactacctcattttctttgta 5168310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 33037561 - 33037647
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||| |||||||||  ||| |||||| || || |||||| |||||  ||||||||||||||||| ||||||||| | || |||||||    
T  33037561 acaactttctctctcatactcacattatctttttactttttctctctattgctttgatttttgtgtcactacctcatttcctttgta 33037647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 39195759 - 39195821
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttg 78  Q
    |||| |||||||||  |||  ||||||| ||||||||||||||||  ||||||||||||||||    
T  39195759 acaactttctctctcatacagacattgttcttctactttctctctctattgctttgatttttg 39195821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 22649691 - 22649618
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||||||  ||| |||||| || || ||||||||||| | ||||||||  ||||||| |||||||||    
T  22649691 acaattttctctctcatactcacattatctttttactttctctccatattgctttagtttttgtgtcactacct 22649618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 35646457 - 35646510
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||||| ||||||||| ||||||| ||||||||| | || |||||||    
T  35646457 tactttctctctatattgctttggtttttgtgtcactacctcatttcctttgta 35646510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 36563049 - 36562944
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaat 148  Q
    ||||||||||||  ||||||| | ||||||| ||| ||||| ||||||||||| |  |||| ||||| || | ||| || ||| ||| | ||||||||||    
T  36563049 tactttctctctctattgcttaggtttttgtgtcaataccttaatttctttgtgtagtttggttgtccaacaagttgtcccaacaaagggttgttcaaat 36562950  T
Q  149 aacatt 154  Q
    ||||||    
T  36562949 aacatt 36562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 36738989 - 36739062
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    |||| |||||||||  ||| |||||| || || ||||||||||||  ||||||||| ||||||| |||||||||    
T  36738989 acaactttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacct 36739062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 11954473 - 11954617
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| ||||||||  || || ||||| |||  ||| |||||||||||||  ||||| |||| |  |||||||| ||||  ||||     
T  11954473 acaactttctctctcatactcacattgttattttattttctttctctattactttgatttttgtgccactatctaagtcactttgtataatttagttgta 11954572  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
    ||| | ||| ||| || ||| | ||||||||||||||||||||||    
T  11954573 taagaagttgtcaaaataaatggttgttcaaataacattgctcta 11954617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 18510705 - 18510857
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||  | | ||||||||||||| ||| |||||||||||||||||||    
T  18510705 acaacttttgcaacaactttccctctcttactcacattgtccttctactttctctctctacttctttgatttttgtgtcattacctaaatttctttgtat 18510804  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgc 156  Q
    |||||| |||||||||||||| |||||||||||  ||||||||||||||||||    
T  18510805 tatttggttgtctaataggttgtcacaagaaaatgttgttcaaataacattgc 18510857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 39234219 - 39234076
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtatta 105  Q
    |||||||||||||| ||||| ||| | |  ||||||||||||||||||| ||||| || || ||||||||||||  ||| ||||||||||||||||||||    
T  39234219 aacttttgcaacaactttctttctctcattcacattgtccttctactttttctctccaatgttttgatttttgtgccaccacctaaatttctttgtatta 39234120  T
Q  106 tttgattgtctaataggttatcacaagaaaagattgttcaaata 149  Q
    |||| |||||||||||||| |||||||||||  |||||||||||    
T  39234119 tttggttgtctaataggttgtcacaagaaaatgttgttcaaata 39234076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 37316856 - 37316701
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||||| ||||||||||||||||  ||||||||||| ||||| |||||||||||||||||||||||    
T  37316856 acaacttttgtgacaactttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttctttgtat 37316757  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || || ||||| || | ||| ||| |  ||||| |||||||||||||||||||||    
T  37316756 aatgtggttgtccaacaagttgtcatagaaaaaggttgttcaaataacattgctct 37316701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 37731241 - 37731087
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  ||||||||||||||  ||| |||||||| ||||||||||| ||||  ||||||||||| |||||  ||||||||||||||||||||||    
T  37731241 acaacttttgtgacaattttctctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttctttgtat 37731142  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     || || ||||  || | ||| |||||  ||||| ||||||||||||||||||||    
T  37731141 aatgtggttgtgcaacaagttgtcacataaaaaggttgttcaaataacattgctc 37731087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 11965823 - 11965978
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||  |||||||||  ||| |||||||| ||||||||||||||||  |||||||||||||||||  ||||| |||||||||| |||||    
T  11965823 acaacttttgtgacagctttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgccactatctaaatttctatgtat 11965922  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || || ||||| || | ||| |||||  ||||| |||||||||||||||||||||    
T  11965923 aatgtggttgtccaacaagttgtcacataaaaaggttgttcaaataacattgctct 11965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 30831802 - 30831935
Alignment:
Q  22 ttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaatag 121  Q
    ||||||||  ||| |||||||| ||||||||||||||||  ||| |||||||||||||  ||||| ||||||  |||||||| |||||||||| ||| |     
T  30831802 ttctctctcatactcacattgttcttctactttctctctctattactttgatttttgtgccactatctaaatccctttgtataatttgattgtataagaa 30831901  T
Q  122 gttatcacaagaaaagattgttcaaataacattg 155  Q
    ||| |||||| ||| |||||||||||||||||||    
T  30831902 gttgtcacaataaatgattgttcaaataacattg 30831935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 31578496 - 31578620
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||| | ||| |||||| |||||  ||||||||||||||||| ||||||||||||||||||||||| | ||  ||||| || | ||| ||||||||||    
T  31578496 cacattattcttttactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaagttgtcacaagaaa 31578595  T
Q  136 agattgttcaaataacattgctcta 160  Q
     ||||||||||||| ||||||||||    
T  31578596 tgattgttcaaatatcattgctcta 31578620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 32944543 - 32944391
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtatta 105  Q
    ||||||||  |||| |||||||||  ||  |||||| ||||| |||||| |||||  ||||||||||||||||| ||||||||||||||| ||| ||| |    
T  32944543 aacttttgtgacaactttctctctcatagtcacattctccttttactttttctctctattgctttgatttttgtgtcactacctaaatttttttatataa 32944444  T
Q  106 tttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    ||| |||||| || |||||||||||||||| | || ||||||||  |||||||    
T  32944443 tttaattgtccaaaaggttatcacaagaaatggttattcaaatatgattgctc 32944391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26481134 - 26480975
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    |||||||||||||  |||||||||| |||  ||| ||| ||||  ||||||||||| |||  ||| ||||||||||||| |||||| ||||||  |||||    
T  26481134 ttaacaacttttgtgacaattttctttctcatactcacgttgtttttctactttctttctctattactttgatttttgtgtcactatctaaatccctttg 26481035  T
Q  101 tattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
    ||| ||||| |||| ||| | ||| |||||| ||| | ||||||||||||||||||||||    
T  26481034 tataatttggttgtataagaagttgtcacaataaagggttgttcaaataacattgctcta 26480975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 14871951 - 14872056
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    |||||||  |||| ||||||||||||  |||||||||||||||||||||| |||||||||||||| | ||| | |||||||| | |||||||||||||||    
T  14871951 tctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaataacat 14872050  T
Q  154 tgctct 159  Q
    | ||||    
T  14872051 ttctct 14872056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 36587498 - 36587357
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| |||||| || || |||| ||||||||  ||||||||||||||||  ||||| |||||||||||||||| ||||  |||||    
T  36587498 acaactttctctctcatactcacattatcattttactctctctcta--ttgctttgatttttgtgccactatctaaatttctttgtataatttagttgtc 36587401  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || ||||| ||| |||||| | |||||||||||||||||||||    
T  36587400 caaaaggttgtcagaagaaatggttgttcaaataacattgctct 36587357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 1079105 - 1079010
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    ||||||||||||||||| ||||| | ||||||||||||||| ||||  |||||||| ||||| |||||||||| | ||||||| ||||||||||||    
T  1079105 attgctttgatttttgtgtcactgcttaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcatataacattgctc 1079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 8847549 - 8847669
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcaca-agaa 134  Q
    |||||| | ||||||||||||||||  ||||||||||| ||| || ||||| |||||||||||||||| ||  | ||||| || | ||| ||||| ||||    
T  8847549 cacattattcttctactttctctctctattgctttgatatttataccactatctaaatttctttgtataatgcggttgtccaacaagttgtcacatagaa 8847648  T
Q  135 aagattgttcaaataacattg 155  Q
    |||||||||||||||||||||    
T  8847649 aagattgttcaaataacattg 8847669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 14877069 - 14877174
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    ||||| || |||| ||||||||||||  ||||||||||||||||||||   ||||| |||||||| | ||| |||||||||| | |||||||||||||||    
T  14877069 tctctatatattgttttgatttttgtgccactacctaaatttctttgttaaatttggttgtctaacaagttgtcacaagaaatggttgttcaaataacat 14877168  T
Q  154 tgctct 159  Q
    | ||||    
T  14877169 ttctct 14877174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 44239125 - 44239220
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||||  ||||| || |  || |||||| ||| | ||||||||||||||||||||    
T  44239125 attgctttgatttttgtgtcactgcctaaatttctttgtataatttagttgtccaaaaaattgtcacaataaatggttgttcaaataacattgctc 44239220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 43057091 - 43057235
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    |||||||||||||  |||| |||||||||| ||| |||||| || || || ||| | |||  ||||||||||||||||| ||||||| ||||||| |||     
T  43057091 ttaacaacttttgtgacaactttctctcttatactcacattatcattttattttttttctctattgctttgatttttgtgtcactacttaaatttattta 43057190  T
Q  101 tattatttgattgtctaataggttatcacaagaaaagattgttca 145  Q
    ||| ||||  ||||| || || ||||||||| |||  ||||||||    
T  43057191 tataatttagttgtccaaaagattatcacaaaaaataattgttca 43057235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 19916697 - 19916784
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||| |||||||||  ||| |||||||| ||||||||||||||||  |||  |||||| ||||| ||||| |||||||||||||||||    
T  19916697 acaactttctctctcatacacacattgttcttctactttctctctctattattttgatatttgtgtcactgcctaaatttctttgtat 19916784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 9990720 - 9990803
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactac 87  Q
    ||||||||||  |||| |||||||||| ||| |||||| || || ||||||||||||  ||||||||| |||||||| ||||||    
T  9990720 acaacttttgtgacaactttctctcttatactcacattatctttttactttctctctctattgctttggtttttgtaccactac 9990803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 32477363 - 32477438
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtat 81  Q
    ||||||||  |||||||||| || | ||| |||||| || || ||||||||||||| |||||||||||||||||||    
T  32477363 aacttttgtgacaattttctttcatatactcacattatctttttactttctctctatattgctttgatttttgtat 32477438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 36417408 - 36417289
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||| | |||||||||||||| |  |||||||||||||||||| ||| ||||||| || ||| ||| |  || ||||| |||| ||| |||||  |||    
T  36417408 cacattttacttctactttctctttttattgctttgatttttgtaccaccacctaaacttttttatataacgtggttgtccaataagttgtcacataaaa 36417309  T
Q  136 agattgttcaaataacattg 155  Q
      || |||||||||||||||    
T  36417308 caatcgttcaaataacattg 36417289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 33057406 - 33057561
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    ||||||||||||| ||||| ||||| ||| |||| || |||||| | |||||||||||||  ||||||||||||||||| | | ||||||||||||||||    
T  33057406 ttaacaacttttgtaacaactttctttctcttactcatattgtcttcctactttctctctctattgctttgatttttgtgttattacctaaatttctttg 33057505  T
Q  101 tattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgc 156  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  33057506 tattatttggttgtctaataggttgtcacaagaaaagattgttcaaataacattgc 33057561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 32777736 - 32777594
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| |||| |||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||| ||||| |||||    
T  32777736 acaactttctctctcatactcacactgtccttctactttctctctccattactttgatttttgtgccactacctaaatttctttgtataatttggttgtc 32777637  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     || | ||||| |||||||||||||||||||||||||||||||    
T  32777636 caacaagttattacaagaaaagattgttcaaataacattgctc 32777594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 13152622 - 13152777
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgcttt-gatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  |||| |||||||||  ||| |||||| ||||| ||||||||||||  |||||||| |||||||||  |||||||||||||||||||||    
T  13152622 acaacttttgtgacaactttctctctcatactcacattatccttttactttctctctctattgcttttgatttttgtgccactacctaaatttctttgta 13152721  T
Q  103 ttatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    | ||||  ||||| || ||||| ||| |||||| | ||||||||||| ||||||||    
T  13152722 taatttagttgtccaaaaggttgtcataagaaatggttgttcaaatatcattgctc 13152777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 33845072 - 33845227
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| ||||||| |  ||| |||||||| |||||||||| | |||   |||||||||||||||| |||||||||||||||||||||||    
T  33845072 acaacttttgtgacaactttctctttcatacacacattgttcttctactttttttctctgttgctttgatttttgtgtcactacctaaatttctttgtat 33845171  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || || ||||| || |  || ||||| |||||| |||||||||||||||||||||    
T  33845172 aatgtggttgtccaacaaattgtcacatgaaaaggttgttcaaataacattgctct 33845227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 34978338 - 34978481
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| |||||| ||||| ||||||||||||  ||||||||| |||||||  |||||||||||||||||||||| ||||  |||||    
T  34978338 acaactttctctctcatactcacattatccttttactttctctctctattgctttgttttttgtgccactacctaaatttctttgtataatttagttgtc 34978437  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || ||||| |||||||||| | ||||| ||||| |||||||||    
T  34978438 caaaaggttgtcacaagaaatggttgttaaaatatcattgctct 34978481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 43081919 - 43081780
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||| ||| |||||||| ||||||||||||||||  |||||||| || ||||| ||||||||||||||||||||||| || || |||||    
T  43081919 acaactttctctcttatacacacattgttcttctactttctctctctattgctttaatatttgtgtcactacctaaatttctttgtataatgtggttgtc 43081820  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattg 155  Q
    ||| |  || |||||  ||||  |||||||||||||||||    
T  43081819 taacaaattgtcacataaaaatgttgttcaaataacattg 43081780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 37352172 - 37352294
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    ||||||| |||||||||||||||||  | || |||||||||||| ||||||||||||||| ||||||| ||||| ||||| || | |||   ||||||||    
T  37352172 cacattgcccttctactttctctctctactgttttgatttttgtgtcactacctaaatttatttgtataatttggttgtccaacaagttggtacaagaaa 37352271  T
Q  136 agattgttcaaataacattgctc 158  Q
     | ||||||||||||||||||||    
T  37352272 tggttgttcaaataacattgctc 37352294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 12007227 - 12007071
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||  || |||||||||||||||  |||||||||||||||||  ||||| |||||||||||||||     
T  12007227 acaacttttgtgacaactttctctctcatactcacatgatcattctactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaa 12007128  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
     ||||| ||||| || | ||| |||||| |||   |||| |||||||||||||||||    
T  12007127 aatttggttgtccaacaagttgtcacaataaatagttgtacaaataacattgctcta 12007071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 45420070 - 45419946
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||| || || ||||||||||||  |||| ||||||||||||  |||||||||||||||||||||| ||||  ||||| || ||||| ||| ||||||    
T  45420070 cacattatcattttactttctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcaaaagaaa 45419971  T
Q  136 agattgttcaaataacattgctcta 160  Q
     | |||||||||||| |||||||||    
T  45419970 tggttgttcaaataatattgctcta 45419946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 15325646 - 15325526
Alignment:
Q  39 attgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaaga 138  Q
    ||||| ||||||||||||||||  |||| ||| |||||||| |||||| |||||||| ||||||| || || ||||| || | ||| |||||  |||||     
T  15325646 attgttcttctactttctctctctattgtttttatttttgtgtcactatctaaatttttttgtataatgtggttgtccaacaagttgtcacataaaaagg 15325547  T
Q  139 ttgttcaaataacattgctct 159  Q
    |||||||||||||||||||||    
T  15325546 ttgttcaaataacattgctct 15325526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 28249551 - 28249460
Alignment:
Q  64 ttgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattg 155  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||  ||||| || | ||| |||||||||| | |||||||||||||||||    
T  28249551 ttgctttgatttttgtgtcactacttaaatttctttgtataatttagttgtccaaaaagttgtcacaagaaatggttgttcaaataacattg 28249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 29723916 - 29723812
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    |||||||  |||||||||||||||||| ||||| |||||||||||||||  ||||| ||||| || | ||| |||||| ||| | |||| ||||||||||    
T  29723916 tctctctctattgctttgatttttgtaccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataacat 29723817  T
Q  154 tgctc 158  Q
    |||||    
T  29723816 tgctc 29723812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 2008823 - 2008719
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    |||||||  ||||||||||| |||||  |||||||||||||||||||||| || || ||||| || | ||| |||||  ||| | |||||||||||||||    
T  2008823 tctctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaatggttgttcaaataacat 2008724  T
Q  154 tgctc 158  Q
    |||||    
T  2008723 tgctc 2008719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 47448856 - 47448955
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| ||||||||  || |||||||| |||  ||||||||| |||||||  ||||||||||||||||||||||    
T  47448856 acaacttttgtgacaactttctctctcatactcacattgtgtttttactttctttctctattgctttggtttttgtgccactacctaaatttctttgtat 47448955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 21103087 - 21103193
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaat 148  Q
    |||||| |||||  ||||||||||||||| |  ||||| |||||||||||||||| | ||  ||||| || | |||||||||||||| | ||||||||||    
T  21103087 tactttatctctttattgctttgatttttatgccactatctaaatttctttgtataagttagttgtccaacaagttatcacaagaaatggttgttcaaat 21103186  T
Q  149 aacattg 155  Q
    | |||||    
T  21103187 atcattg 21103193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 43807842 - 43807700
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||||||| |||||  ||| |||||||| ||| |||||||||| |  |||  |||||||||||| ||||||| ||||| ||||||||| ||||| ||||     
T  43807842 acaattttttctctcatactcacattgttcttttactttctctttctattaatttgatttttgtgtcactacttaaatgtctttgtataatttggttgta 43807743  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     || |  || ||| |||||| | |||||||||||||| |||||    
T  43807742 caacaaattgtcataagaaagggttgttcaaataacactgctc 43807700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 27570390 - 27570529
Alignment:
Q  21 tttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaata 120  Q
    |||||||||  ||| |||||  || ||||||||| | |||  |||||||||||||||||  ||||| | |||||||||||||  ||||| ||||| ||||    
T  27570390 tttctctctcatactcacatgatcattctactttttttctctattgctttgatttttgtgccactatcaaaatttctttgtaaaatttggttgtccaata 27570489  T
Q  121 ggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
     ||| |||||| |||   |||| || ||||||||||||||    
T  27570490 agttgtcacaataaatagttgtacagataacattgctcta 27570529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 26749079 - 26749189
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaat 148  Q
    |||||||| |||  |||||||||||| ||||  ||  |||||||| ||||||||| ||||  ||||| || || || |||||| ||| | ||||||||||    
T  26749079 tactttctttctctattgctttgattgttgtgccataacctaaatctctttgtataatttagttgtccaaaagattgtcacaaaaaatggttgttcaaat 26749178  T
Q  149 aacattgctct 159  Q
    |||||||||||    
T  26749179 aacattgctct 26749189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 40854698 - 40854621
Alignment:
Q  2 taacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgt 79  Q
    ||||||||||||  ||||||||||||||  ||| |||||| |  || ||||||||||||  |||||||||||||||||    
T  40854698 taacaacttttgtgacaattttctctctcatactcacattatatttttactttctctctctattgctttgatttttgt 40854621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 46880937 - 46881086
Alignment:
Q  9 ttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattattt 108  Q
    |||||| | ||||||||||||  ||| || ||||| |||||||| |||||||  ||| |||||||||||    ||||| |||||| || |||||| ||||    
T  46880937 ttttgcgataattttctctctcatactcatattgttcttctactatctctctctattactttgattttttcgccactatctaaatgtcgttgtataattt 46881036  T
Q  109 gattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    | |||| ||| |  || ||| || ||| | ||||||||||||||||||||    
T  46881037 ggttgtataaaaaattgtcataataaagggttgttcaaataacattgctc 46881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 8904413 - 8904348
Alignment:
Q  93 tttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    ||||||| ||| |||||||| || || | |||||||||||||||  ||||||||| ||||||||||    
T  8904413 tttctttatataatttgattatccaacaagttatcacaagaaaatgttgttcaaaaaacattgctc 8904348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 2008899 - 2008843
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctct 60  Q
    ||||||||||  |||| |||||||||  ||| |||||||| ||||||||||||||||    
T  2008899 acaacttttgtgacaactttctctctcatacacacattgttcttctactttctctct 2008843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 4672021 - 4672166
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||||||||||||||| ||| ||||| | || ||||||||||||||||||||||||| || || ||||||||||||| |||  |||||||||||||||||    
T  4672021 acaacttttgcaacaactttatctctctcactcacattgtccttctactttctctctccaatgttttgatttttgtaccaccgcctaaatttctttgtat 4672120  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaata 149  Q
    |||||| |||||||||||| | |||||||||||  |||||||||||    
T  4672121 tatttggttgtctaatagggtgtcacaagaaaaagttgttcaaata 4672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 44090928 - 44091070
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    ||||||||||||||  ||| |||||||| ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| || || |||||    
T  44090928 acaattttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtc 44091027  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     || | ||| ||||| |||||| ||||||||||||||||||||    
T  44091028 caaaaagttgtcacatgaaaaggttgttcaaataacattgctc 44091070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 33451604 - 33451450
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| ||||||||| |||||||||||||||  |||||||||||||||||  |||||||||| |||||||||||    
T  33451604 acaacttttgtgacaactttctctctcatactcacattgtc-ttctactttctctctctattgctttgatttttgtgccactacctaa-tttctttgtat 33451507  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
     |||||||||||||| | ||| |||||||||| | ||||||||||||||||||||||    
T  33451506 aatttgattgtctaacaagttgtcacaagaaagggttgttcaaataacattgctcta 33451450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 1068636 - 1068792
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||||| ||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  1068636 acaacttttgtgacaactttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtaacactacctaaatttctttgtat 1068735  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
     || || ||||| || | ||| |||||  ||||| ||||||||||||||||||||||    
T  1068736 aatgtggttgtccaacaagttgtcacataaaaaggttgttcaaataacattgctcta 1068792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 25987828 - 25987673
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| ||| |||||  ||| |||||| || ||||||||| |||||  ||||||||||||||||| |||||||||||||||||||||||    
T  25987828 acaacttttgtgacaactttatctctcatactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtat 25987729  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     ||||  ||||  || ||||| |||||||||| | |||||||||||||||| ||||    
T  25987728 aatttagttgttcaaaaggttgtcacaagaaatggttgttcaaataacattactct 25987673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 15716984 - 15716862
Alignment:
Q  37 acattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaa 136  Q
    ||||||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| || || ||||| || | ||| |||||  ||||    
T  15716984 acattgttcttctactttctctctctattgctttgatatttgtatcactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaa 15716885  T
Q  137 gattgttcaaataacattgctct 159  Q
      |||||||||||||||||||||    
T  15716884 agttgttcaaataacattgctct 15716862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 34435778 - 34435624
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  ||||||||||||||  ||| |||||||| ||||||||||| ||||  ||||||||||| |||||  ||||||||||||||||||||||    
T  34435778 acaacttttgtgacaattttctctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttctttgtat 34435679  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     || || ||||  || | ||| |||||  ||||| ||||||||||||||||||||    
T  34435678 aatgtggttgtgcaacaagttgtcacataaaaaggttgttcaaataacattgctc 34435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 37172127 - 37172244
Alignment:
Q  41 tgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagatt 140  Q
    |||||||||| ||||||| | |||| ||||||||||||| ||| ||||||||||||||||||| ||||| ||||| || |  || | ||||||||| |||    
T  37172127 tgtccttctattttctctttccattactttgatttttgtgtcattacctaaatttctttgtataatttggttgtccaacaaattgttacaagaaaaaatt 37172226  T
Q  141 gttcaaataacattgctc 158  Q
    ||||||||||||||||||    
T  37172227 gttcaaataacattgctc 37172244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 44061749 - 44061903
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtatta 105  Q
    ||||||||  |||| |||||||||  ||| |||||| || || |||||||||| |   |||||||||||||||| |||||| |||||||||||||||| |    
T  44061749 aacttttgtgacaactttctctctcatactcacattatcattttactttctctttctgttgctttgatttttgtgtcactatctaaatttctttgtataa 44061848  T
Q  106 tttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
    |||| ||||| || |  |||||||||||||   |||||||||||||||| |||||    
T  44061849 tttggttgtccaacaaattatcacaagaaatagttgttcaaataacattactcta 44061903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 44825472 - 44825618
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||||||| |||||  ||| |||||| |   ||||||||||||||  |||||||||||||||||||   || ||||||||||||||||    
T  44825472 acaacttttgtgacaattttatctctcatactcacattatttatctactttctctctctattgctttgatttttgtatatttatctaaatttctttgtat 44825571  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataa 150  Q
     ||||||||||| |  | ||| ||||||||||| |||||||| ||||    
T  44825572 aatttgattgtcaatcaagttgtcacaagaaaaaattgttcatataa 44825618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 28772117 - 28772012
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    |||||||  |||| ||||||||||||  |||||||||||||||||||||| ||||  ||||| || ||||| |||||||||| | ||||||||||| |||    
T  28772117 tctctctttattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatcat 28772018  T
Q  154 tgctct 159  Q
    ||||||    
T  28772017 tgctct 28772012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 12241134 - 12241257
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| ||||||| || |||||  ||||||||||||||| | |||||| |||||||||||||||| || || ||||| || |  ||||||||  |||    
T  12241134 cacattgttcttctacattatctctctattgctttgatttttatgtcactatctaaatttctttgtataatgtggttgtccaacaaattatcacataaaa 12241233  T
Q  136 agattgttcaaataacattgctct 159  Q
    |  |||||||||||||||||||||    
T  12241234 aagttgttcaaataacattgctct 12241257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 26026926 - 26027081
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| ||||| |||  ||| |||||| || || || ||||||| |  |||||||| ||||||||||||||| ||||||||||||||||    
T  26026926 acaacttttgtgacaactttctttctcatactcacattatcattttattttctctttctattgctttaatttttgtatcactatctaaatttctttgtat 26027025  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     ||||| ||| | || | ||| ||||||||||    ||||||||||||||||||||    
T  26027026 aatttggttggccaacaagttgtcacaagaaatagctgttcaaataacattgctct 26027081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 33107876 - 33107753
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| ||||||||||||||||   |||||||||| |||||   ||||||||||||||||||||| || || ||||| || |  || |||||  |||    
T  33107876 cacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaa 33107777  T
Q  136 agattgttcaaataacattgctct 159  Q
    || |||||||||||||||||||||    
T  33107776 aggttgttcaaataacattgctct 33107753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 9630188 - 9630307
Alignment:
Q  39 attgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaaga 138  Q
    |||||||||||| ||||| |||  ||| ||||||||||| ||||||||||||||||||||| ||| ||||  |||||||| |  || |||||| |||       
T  9630188 attgtccttctattttctttctctatttctttgatttttatatcactacctaaatttctttatataatttagttgtctaacaaattgtcacaaaaaatag 9630287  T
Q  139 ttgttcaaataacattgctc 158  Q
    ||||| ||||||||||||||    
T  9630288 ttgtttaaataacattgctc 9630307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 2731002 - 2730849
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||||||||| ||||| |||||||||  ||  |||||| || || ||||||||||||  | |||||||||||||||  ||||| |||||||| |||||||    
T  2731002 acaacttttgtaacaactttctctctcatattcacattatctttttactttctctctcaactgctttgatttttgtgccactatctaaatttatttgtat 2730903  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgct 157  Q
     ||||  || |  || ||||| ||||||||||   ||||||||||| |||||||    
T  2730902 aatttagttattcaaaaggttgtcacaagaaattgttgttcaaatatcattgct 2730849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 5601028 - 5600903
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||||||| |||||  ||| |||||  |  |||||||||||||||  ||||||||||||||||| |||| | |||||||||||||||     
T  5601028 acaacttttgtgacaattttttctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaa 5600929  T
Q  104 tatttgattgtctaataggttatcac 129  Q
     ||||| ||||| || | ||||||||    
T  5600928 aatttggttgtccaacaagttatcac 5600903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 5639592 - 5639717
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||||||| |||||  ||| |||||  |  |||||||||||||||  ||||||||||||||||| |||| | |||||||||||||||     
T  5639592 acaacttttgtgacaattttttctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaa 5639691  T
Q  104 tatttgattgtctaataggttatcac 129  Q
     ||||| ||||| || | ||||||||    
T  5639692 aatttggttgtccaacaagttatcac 5639717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 36874120 - 36874001
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| |||||| ||||||||||  ||  ||||||||||||| ||||| ||||||  |||| ||| ||||| |||| ||| |  ||||||||| |||    
T  36874120 cacattgttcttctattttctctcta--ttattttgatttttgtaccactatctaaatccctttatataatttggttgtataaaaaattatcacaataaa 36874023  T
Q  136 agattgttcaaataacattgct 157  Q
     | |||||||||||||||||||    
T  36874022 gggttgttcaaataacattgct 36874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 45406011 - 45405880
Alignment:
Q  18 aattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtcta 117  Q
    |||||| |||||  ||| ||||||| |||||||||||||||||  |||| |||||||||||| | | ||  ||||||| ||||||| ||||| ||||| |    
T  45406011 aattttttctctcatactcacattgcccttctactttctctctctattgttttgatttttgtgttattatataaatttatttgtataatttggttgtcca 45405912  T
Q  118 ataggttatcacaagaaaagattgttcaaata 149  Q
    | | ||| ||| |||||| | || ||||||||    
T  45405911 acaagttctcataagaaatggttattcaaata 45405880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 31249566 - 31249468
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  |||||||| |||||  ||| |||||| || || ||||||||||||  ||||||||| |||||||| |||||||| | || |||||||    
T  31249566 acaacttttgtgacaattttttctctcatactcacattatctttttactttctctctctattgctttggtttttgtaccactacctcatttcctttgta 31249468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 10731575 - 10731650
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgt 79  Q
    |||||||||| ||||| ||||||| || ||| || ||| || || ||||||||||||  |||||||||||||||||    
T  10731575 acaacttttgtaacaactttctcttttatactcatattatctttttactttctctctctattgctttgatttttgt 10731650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 22719469 - 22719567
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  ||||||||||||||  | | |||||| || || ||||||||||||  ||||||||| |||||||   ||||||| | ||||||||||    
T  22719469 acaacttttgtgacaattttctctctcatgctcacattatctttttactttctctctctattgctttggtttttgtgcaactacctcattttctttgta 22719567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 32501238 - 32501140
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||||||||  |||||||||||||||  ||| |||||| |  || ||| ||||||||  ||| ||||||||||||| ||||||||| | || |||||||    
T  32501238 acaacttttttaacaattttctctctcatactcacattatttttttacgttctctctctattactttgatttttgtgtcactacctcatttcctttgta 32501140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 34476255 - 34476335
Alignment:
Q  73 tttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    ||||||| ||| |||| | ||| ||||||||  ||||||||||| ||| ||| |||||| ||| | |||||||||||||||    
T  34476255 tttttgtgtcaataccaatattgctttgtatattttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 34476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 8982 - 8840
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    ||||||||||||||  ||| |||||||| ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| || || |||||    
T  8982 acaattttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtc 8883  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     || | ||| ||||| |||||| ||||||||||||||||||||    
T  8882 caaaaagttgtcacatgaaaaggttgttcaaataacattgctc 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 34307550 - 34307428
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| |||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||| ||| ||||||||||    
T  34307550 cacattgttcttctactttctctttctattgctttggtttttgtatcactacctaaatttctttgtataatttggttgtccaataagttgtcacaagaaa 34307451  T
Q  136 agattgttcaaataacattgctc 158  Q
     ||||||||||||||||||||||    
T  34307450 ggattgttcaaataacattgctc 34307428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 4494266 - 4494123
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||| ||| |||||  || || |||||||||| |  ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  4494266 acaactttctctcttatactcacatcatcattttactttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtc 4494167  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || | ||| ||| |||||| | |||||||||||||||||||||    
T  4494166 caacaagttgtcataagaaatggttgttcaaataacattgctct 4494123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 31104727 - 31104849
Alignment:
Q  37 acattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaa 136  Q
    ||||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||||| |||| ||||  ||||| || |  || |||||||||||    
T  31104727 acattgtccttctactttctctctctattgttttgatttttgtgtcactacctaaatttcttcgtataatttagttgtcaaacaaattgtcacaagaaaa 31104826  T
Q  137 gattgttcaaataacattgctct 159  Q
      |||||||||||||||||||||    
T  31104827 agttgttcaaataacattgctct 31104849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 41443232 - 41443077
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  | ||||||||||||  ||| |||||| | ||| ||||||||||||  |||| ||||||||||||   | |||||||||||||||||||    
T  41443232 acaacttttgtgataattttctctctcatactcacattattcttttactttctctctctattgttttgatttttgtgcaaatacctaaatttctttgtat 41443133  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     ||||  ||||| || ||||| |||||||||| ||||||||||||| |||||||||    
T  41443132 aatttagttgtccaaaaggttgtcacaagaaatgattgttcaaatatcattgctct 41443077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 25188416 - 25188313
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcac-aagaaaagattgttcaaataaca 152  Q
    |||||||  |||||||||||||| || ||| ||||||||||||||||||||||||  |||||||||||||| |||| || ||||| ||||||||||||||    
T  25188416 tctctctctattgctttgattttggtgtcattacctaaatttctttgtattatttagttgtctaataggttgtcacaaaaaaaaggttgttcaaataaca 25188317  T
Q  153 ttgc 156  Q
    ||||    
T  25188316 ttgc 25188313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 9692787 - 9692901
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||| || || ||||||||||||  ||||||||||||||||| ||||| ||||| ||||||||||| ||||  |||||||| ||||| ||||||||||    
T  9692787 cacattatcattttactttctctctctattgctttgatttttgtgtcactgcctaactttctttgtataatttagttgtctaaaaggttgtcacaagaaa 9692886  T
Q  136 agattgttcaaataa 150  Q
     | ||||||||||||    
T  9692887 tggttgttcaaataa 9692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 34456820 - 34456974
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  | || |||||||||  ||| || ||| || || ||||||||||||  |||||||| ||||||||  || |||||||||||||||||||    
T  34456820 acaacttttgtgataactttctctctcatactcatattatctttttactttctctctctattgctttaatttttgtgccaatacctaaatttctttgtat 34456919  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     ||||  |||||||| || || ||||||||||  |||||||||||| ||||||||    
T  34456920 aatttagttgtctaaaagattgtcacaagaaataattgttcaaatatcattgctc 34456974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 39099413 - 39099502
Alignment:
Q  70 tgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||| || | ||| |||||| |||  ||||||||||||||||||||||    
T  39099413 tgatttttgtaccactacctaaatttctttgtataatttaattgtccaaaatgttgtcacaaaaaataattgttcaaataacattgctct 39099502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 39714046 - 39713927
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| ||| ||||||||||||  ||||||||||||||||| | |||| ||||| || ||||||| ||||| ||||| || |  ||||||||| |||    
T  39714046 cacattgttcttatactttctctctctattgctttgatttttgtgttactatctaaaattttttgtataatttggttgtccaacaaattatcacaaaaaa 39713947  T
Q  136 agattgttcaaataacattg 155  Q
     | |||||||||||||||||    
T  39713946 tggttgttcaaataacattg 39713927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 33472454 - 33472305
Alignment:
Q  10 tttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttg 109  Q
    |||| |||||||||||||||  ||  || ||||| ||| |||||||| | |  ||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  33472454 tttgtaacaattttctctctcatattcatattgttcttttactttctttttctattactttgatttttgtatcactatctaaatctctttgtataatttg 33472355  T
Q  110 attgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    ||||| ||| | ||| ||| || ||| | ||||| |||||||||| ||||    
T  33472354 attgtataagaagttgtcataataaagggttgtttaaataacattactct 33472305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 32362995 - 32363116
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| ||| |||||||||||||  |||||||||| ||| |  |||||||||||| ||||||||| || || ||||| ||||  || ||||| ||||    
T  32362995 cacattgttcttttactttctctcta--ttgctttgatatttatgccactacctaaatctctttgtataatgtggttgtccaataaattgtcacatgaaa 32363092  T
Q  136 agattgttcaaataacattgctct 159  Q
    || |||||||||||||||| ||||    
T  32363093 aggttgttcaaataacatttctct 32363116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 32145985 - 32145871
Alignment:
Q  46 ttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttca 145  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||  |||| ||| || || | ||| || |   ||| | |||||||    
T  32145985 ttctactttctctctctattgttttgatttttgtgtcactacctaaatttctttgtaaaatttaattatccaacaagttgtccccgtaaatggttgttca 32145886  T
Q  146 aataacattgctcta 160  Q
    |||||||||||||||    
T  32145885 aataacattgctcta 32145871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 25188506 - 25188450
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctct 60  Q
    |||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||||    
T  25188506 acaacttttgcaacaactttctctctcttactcacattgtccttatactttctctct 25188450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 38671659 - 38671797
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    ||||||||||||||  ||| |||||||| ||| |||||| | |||  ||| |||| ||||||||||||||| ||||||  |||| ||| |||| |||||     
T  38671659 acaattttctctctcgtactcacattgttcttatactttatttctctattactttaatttttgtatcactatctaaatcactttatataatttaattgta 38671758  T
Q  116 taataggttatcacaagaaaagattgttcaaataacatt 154  Q
    ||  | ||||| |||| ||| | ||||||||||||||||    
T  38671759 taggaagttattacaataaatggttgttcaaataacatt 38671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 34064150 - 34064033
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    |||| |||||||| ||||| ||| |||||  ||| |||||| |  ||||||||||| |||  ||| ||||||||||| ||||||||||||| ||| | ||    
T  34064150 ttaataacttttgtaacaactttatctctcatactcacattatttttctactttctttctctattactttgatttttatatcactacctaagtttatctg 34064051  T
Q  101 tattatttgattgtctaa 118  Q
    ||| ||||| ||||||||    
T  34064050 tataatttgtttgtctaa 34064033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 29525942 - 29526054
Alignment:
Q  53 ttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataaca 152  Q
    ||||||||  |||| ||||||||||||  ||||| |||||||| ||||||  ||||| ||||| || | ||| |||||| ||| | |||| |||||||||    
T  29525942 ttctctctctattgttttgatttttgtgccactatctaaatttttttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataaca 29526041  T
Q  153 ttgctctagaata 165  Q
    |||||||| ||||    
T  29526042 ttgctctaaaata 29526054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 5114139 - 5114205
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||||| || || ||||||||||||  ||||||||||||||||| ||||||||| | ||||||||||    
T  5114139 cacattatctttttactttctctctctattgctttgatttttgtgtcactacctcattttctttgta 5114205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 20548032 - 20547934
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  ||||||||||||||  ||| ||| || || || ||||||||||||  |||||||||||||||||  |||||||| | || |||||||    
T  20548032 acaacttttgtgacaattttctctctcatactcacgttatctttttactttctctctctattgctttgatttttgtgccactacctcatttcctttgta 20547934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 41505520 - 41505618
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || ||||||||||||  ||||||||| ||||||| ||||||||| | || |||||||    
T  41505520 acaacttttgtgacaactttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacctcatttcctttgta 41505618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 41309191 - 41309244
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||||  ||||||||||||||||| ||||||||| | ||||||||||    
T  41309191 tactttctctctctattgctttgatttttgtgtcactacctcattttctttgta 41309244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 6178467 - 6178383
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacc 88  Q
    ||||||||||  ||||||||||||||  ||| |||||| |  || ||||||||||||  ||||||||||||||||| ||| ||||    
T  6178467 acaacttttgtgacaattttctctctcatactcacattatgtttttactttctctctctattgctttgatttttgtgtcaatacc 6178383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 8502929 - 8502833
Alignment:
Q  7 acttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||| || |||||| ||||| |||| || |||||  |  ||||||||||||  ||||||||||||||| | ||| ||| |||||||||||||||    
T  8502929 acttttgaaataattttatctctcttactcatattgtgttcttactttctctctctattgctttgatttttatctcaatacataaatttctttgtat 8502833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 27168711 - 27168567
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| || ||| | ||||||||| ||||||  ||| |||||||||||||  |||||  |||||  |||||||| ||||| ||||     
T  27168711 acaactttctctctcatactcatattattcttctacttcctctctctattactttgatttttgtgccactatttaaatccctttgtataatttggttgta 27168612  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
    ||| | ||| ||| || ||| | ||||||||||||||||| ||||    
T  27168611 taagaagttgtcataataaagggttgttcaaataacattgttcta 27168567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 20221608 - 20221570
Alignment:
Q  65 tgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  20221608 tgctttgatttttgtatcaatacctacatttctttgtat 20221570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 27541532 - 27541446
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||||||  ||| |||||| || || ||||||||||||  ||||||||| |||||||  |||||||| | || |||||||    
T  27541532 acaattttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccactacctcatttcctttgta 27541446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 38926669 - 38926755
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||| |||||||||  ||| |||||| || || ||||||||||||  ||||||||| ||||||| ||||||||| | || |||||||    
T  38926669 acaactttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactaccttatttcctttgta 38926755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 52254168 - 52254082
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||| |||||||||  ||| | ||||||| || ||||||||||||  ||||||||| ||||||| ||||||||| | || |||||||    
T  52254168 acaactttctctctcatactcgcattgtctttttactttctctctctattgctttggtttttgtgtcactacctcatttcctttgta 52254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 7668217 - 7668156
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgattttt 77  Q
    ||||||||||||||| ||| |||||| || || ||||||||||||  ||||||||| |||||    
T  7668217 acaattttctctcttatactcacattatctttttactttctctctctattgctttggttttt 7668156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 9862596 - 9862709
Alignment:
Q  37 acattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaa 136  Q
    ||||||||||| || ||| |||||  ||| |||||||||||||  ||||| ||||| |   |||||| ||||| |||  ||| ||||| |||||| ||||    
T  9862596 acattgtccttttattttttctctcaattactttgatttttgtgccactatctaaactatgttgtataatttggttgcataagaggttgtcacaataaaa 9862695  T
Q  137 gattgttcaaataa 150  Q
    | ||||||||||||    
T  9862696 ggttgttcaaataa 9862709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 8645338 - 8645492
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||| ||||| ||||||||||||  ||||||||||||| ||  |||||||||||||||||||||||    
T  8645338 acaacttttgtgacaactttctctctcatactcacattatccttttactttctctctctattgctttgatttatgcgtcactacctaaatttctttgtat 8645437  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     ||||  ||||| || ||||| |||||||||| | ||||||||||| ||||||||    
T  8645438 aatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatcattgctc 8645492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 5739808 - 5739650
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    |||||||||||||  |||| ||||| |||| ||| || |||||||||||| ||||||| |  ||||||||||||||||| ||||||||||| |||||||     
T  5739808 ttaacaacttttgtgacaactttctttcttatactcatattgtccttctaatttctctttctattgctttgatttttgtgtcactacctaattttcttta 5739709  T
Q  101 tattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    | | ||||||||||| || | ||| ||| |||||| |  ||||||||||||||||||||    
T  5739708 tttaatttgattgtccaacaagttgtcataagaaatggatgttcaaataacattgctct 5739650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 8505815 - 8505658
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||  |||||| ||||| |||||| |||||  ||||||||||||||||||  |||||||||||||||||||||    
T  8505815 acaacttttgtgacaactttctctctcatattcacattatccttttactttttctctctattgctttgatttttgtacaactacctaaatttctttgtat 8505716  T
Q  104 tatttga-ttgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
     |||| | ||||| || |  || |||||||||| ||||||||||||| ||||||||||    
T  8505715 aatttaagttgtccaaaaaattgtcacaagaaatgattgttcaaatatcattgctcta 8505658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 18065131 - 18064980
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| ||| |||||  ||| |||||||| ||||||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||    
T  18065131 acaacttttgtgacaactttttctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgccactacctaaatttctttgtat 18065032  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattg 155  Q
     || || ||||| || | ||| |||||  ||||  |||||||||||||||||    
T  18065031 aatgtggttgtccaacaagttgtcacataaaaaagttgttcaaataacattg 18064980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 33712350 - 33712505
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||||| ||||||||||||||||   |||||||||| |||||   |||||||||||||||||||||    
T  33712350 acaacttttgtgacaactttctctctcatacacacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtat 33712449  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || || ||||| || | ||| | |||  ||||| |||||||||||||||||||||    
T  33712450 aatgtggttgtccaacaagttgttacataaaaaggttgttcaaataacattgctct 33712505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 14910265 - 14910368
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctctaga 162  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||| || ||||| ||| |||||| | ||||||||||||| ||||||  ||    
T  14910265 attgctttgatttttgtgtcactacctaaatttctttgtataatttagttgtccaaaaggttctcaaaagaaatg-ttgttcaaataacgttgctcatga 14910363  T
Q  163 atata 167  Q
    |||||    
T  14910364 atata 14910368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 1286993 - 1287098
Alignment:
Q  54 tctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacat 153  Q
    |||||||  ||| ||||||||||||| |||||| |||||||  ||||||| ||||  |||| ||| | ||| |||||| ||| |||||||||||||||||    
T  1286993 tctctctcgattactttgatttttgtgtcactatctaaattcttttgtataatttagttgtataagaagttgtcacaataaaggattgttcaaataacat 1287092  T
Q  154 tgctct 159  Q
    ||||||    
T  1287093 tgctct 1287098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 11635576 - 11635421
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||  |||||||  |||||| |||||||||  ||| |||||||||||||  ||||| |||||| |||||||||    
T  11635576 acaacttttgtgacaactttctctctcatattcacattgctcttctattttctctctctattactttgatttttgtgccactatctaaatctctttgtat 11635477  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     ||||| |||| ||| |  || |||||| ||| | |||||||||||| | ||||||    
T  11635476 aatttggttgtataagaaattgtcacaataaagggttgttcaaataagactgctct 11635421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 17182172 - 17182282
Alignment:
Q  48 ctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaa 147  Q
    ||||||| |||||  ||| ||||||||||| |  ||||| ||||||  |||||||| |||||||||| ||| | ||| ||| || ||| | |||||||||    
T  17182172 ctactttttctctctattactttgatttttatgccactatctaaatccctttgtataatttgattgtataagaagttgtcataataaagggttgttcaaa 17182271  T
Q  148 taacattgctc 158  Q
    |||||||||||    
T  17182272 taacattgctc 17182282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 10375743 - 10375812
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtat-tatttgattgtctaataggttatcacaa 131  Q
    |||| |||||||||||| ||| |||||| |||||||||||| | ||||||||||| |||  |||||||||    
T  10375743 attgttttgatttttgtgtcaatacctatatttctttgtatatctttgattgtcttataaattatcacaa 10375812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 20998142 - 20998089
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||||  ||||||||| ||||||||||| ||||| | ||||||||||    
T  20998142 tactttctctctctattgctttggtttttgtatcaatacctcattttctttgta 20998089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 3772444 - 3772484
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||| |||||||||||| |||||| ||||||||||||||||    
T  3772444 attgatttgatttttgtgtcactatctaaatttctttgtat 3772484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 26595380 - 26595476
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||||||  ||||||||| |||||  ||| |||||| |  || ||||||||||||  ||||||||| ||||||| ||| ||||| | ||||||||||    
T  26595380 aacttttataacaattttttctctcatactcacattatgtttttactttctctctctattgctttggtttttgtgtcaatacctcattttctttgta 26595476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 7919091 - 7918953
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| || |||||||||||||||| |||||  ||| |||||||||||||  |||||||||||||||||||||| ||||| |||||    
T  7919091 acaactttctctctcatactcatattgtccttctactttatctctctattactttgatttttgtgccactacctaaatttctttgtataatttggttgtc 7918992  T
Q  116 taataggttatcacaagaaaagattgttcaaataacatt 154  Q
    ||| | ||| |||||||||| | ||||||||||||||||    
T  7918991 taacaagttgtcacaagaaagggttgttcaaataacatt 7918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 48858853 - 48859007
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || ||||| ||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  48858853 acaacttttgtgacaactttctctctcatactcacattatcattttacttcctctctctattgctttgatttttgtgtcactatctaaatttctttgtat 48858952  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
     ||||  ||||| || ||||| |||||||||| | ||||||| ||||||||||||    
T  48858953 aatttagttgtccaaaaggttgtcacaagaaatggttgttcatataacattgctc 48859007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 5771726 - 5771631
Alignment:
Q  63 attgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    ||||||||||||||| |  |||||||||||||||||||||| ||||  |||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  5771726 attgctttgatttttctgccactacctaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatgattgttcaaataacattgctc 5771631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 40439869 - 40439726
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| |||||||| ||||||||||||||||  ||||||||||| |||||  |||||||||||||||||||||| || || |||||    
T  40439869 acaactttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgacactacctaaatttctttgtataatgtggttgtc 40439770  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     || |  || |||||  ||||| |||||||||||||||||||||    
T  40439769 caacaaattgtcacataaaaaggttgttcaaataacattgctct 40439726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 4213104 - 4213257
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtatta 105  Q
    ||||||||  |||| |||||||||  ||| |||||||| ||||||| ||||||||  ||| ||||||||||||| |||||| |||||| | ||| ||| |    
T  4213104 aacttttgtgacaactttctctctcatactcacattgttcttctaccttctctctctattactttgatttttgtgtcactatctaaatctttttatataa 4213203  T
Q  106 tttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    |||| |||| ||| | ||| |||||| ||| | |||||||||||||||||||||    
T  4213204 tttggttgtataagaagttgtcacaataaagggttgttcaaataacattgctct 4213257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 4857972 - 4858087
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| ||||||||||||||||  ||||||||||| |||||  |||||| ||||||||||||||| || || ||||| ||||  ||||||||  |||    
T  4857972 cacattgttcttctactttctctctctattgctttgatatttgtgccactacttaaatttctttgtataatgtggttgtccaataaattatcacataaaa 4858071  T
Q  136 agattgttcaaataac 151  Q
    || |||||||||||||    
T  4858072 aggttgttcaaataac 4858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 47642646 - 47642493
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtatta 105  Q
    ||||||||  |||| |||||||||  ||| |||||| || |  |||||||||| |  |||||||| |||||||| |||||| |||||||||||||||| |    
T  47642646 aacttttgtgacaactttctctctcatactcacattatcatattactttctctttctattgctttaatttttgtgtcactatctaaatttctttgtataa 47642547  T
Q  106 tttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    |||| ||||| || | ||| || ||| ||| | |||||||||||||||||||||    
T  47642546 tttggttgtccaacaagttgtcccaaaaaatggttgttcaaataacattgctct 47642493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 38878910 - 38878788
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaa 135  Q
    |||||||| |||||||||| ||| |  ||||||||||||||||| ||||||||||||||||||| ||| || |  ||||| || | ||| |||||  |||    
T  38878910 cacattgttcttctactttttctttctattgctttgatttttgtgtcactacctaaatttctttatataatatagttgtccaacaagttgtcacataaaa 38878811  T
Q  136 agattgttcaaataacattgctc 158  Q
    |  ||||||||||||||||||||    
T  38878810 atgttgttcaaataacattgctc 38878788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 17082784 - 17082685
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||| | |||||| |||||||||  ||| ||||||| |||||  ||||||||||||||||||||||    
T  17082784 acaacttttgtgacaactttctctctcatacacacattattcttctattttctctctctattactttgatatttgtgccactacctaaatttctttgtat 17082685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 48983709 - 48983554
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||  |  ||||||||||||| |  |||||||||||||||||  || || |||||||||||||||     
T  48983709 acaacttttgtgacaactttctctctcatactcacatgattattctactttctctttctattgctttgatttttgtgccattatctaaatttctttgtaa 48983610  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
     ||||| ||||| || | ||| |||||| ||| | |||| | ||||||||||||||    
T  48983609 aatttggttgtccaacaagttgtcacaataaatggttgtaccaataacattgctct 48983554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 27742647 - 27742795
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||||| ||||||| |||||||||  |||||||||||||||      |||||||||||||||||||    
T  27742647 acaacttttgtgacaactttctctctcatacacacattgttcttctacattctctcta--ttgctttgatttttg------tacctaaatttctttgtat 27742738  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
      | |  ||||| || | ||| | |||  ||||| ||||||||||||||||||||||    
T  27742739 agtgttgttgtccaacaagttgttacataaaaaggttgttcaaataacattgctcta 27742795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 42468667 - 42468777
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaat 148  Q
    |||||| |||||  |||| ||| |||||||| ||||||||||||||||||||||| | ||  ||||| || |  || |||||||||| | ||||||||||    
T  42468667 tactttatctctttattgttttaatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaaattgtcacaagaaatggttgttcaaat 42468766  T
Q  149 aacattgctct 159  Q
    | |||||||||    
T  42468767 atcattgctct 42468777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 35369729 - 35369814
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||  |||| ||||| |||  ||| ||||||||| || ||||||||||||  ||||||||||||||||| |||||||||    
T  35369729 acaacttttgtgacaactttctatctcatactcacattgtctttttactttctctctctattgctttgatttttgtgtcactacct 35369814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 649798 - 649896
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || ||||||||||||  ||||||||| ||||||| ||||||||| | || |||||||    
T  649798 acaacttttgtgacaactttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacctcatttcctttgta 649896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 23332313 - 23332443
Alignment:
Q  18 aattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtcta 117  Q
    |||||||| |||  ||| ||||||||  || ||||||  ||||  ||||||||||| ||||| | ||||||||||||||||||||| || || ||||| |    
T  23332313 aattttctttctcatacacacattgtttttttacttttactctctattgctttgatatttgtgttactacctaaatttctttgtataatgtggttgtcca 23332412  T
Q  118 ataggttatcacaagaaaagattgttcaaat 148  Q
    | |  ||||||||  ||||| ||||||||||    
T  23332413 acaaattatcacataaaaaggttgttcaaat 23332443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 37685360 - 37685443
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || |||||||||||||  |||||||||||||||| |||||||||    
T  37685360 acaacttttgtgacaactttctctctcatactcacattatctttttactttctctcta--ttgctttgatttttgtgtcactacct 37685443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 37700158 - 37700075
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || |||||||||||||  |||||||||||||||| |||||||||    
T  37700158 acaacttttgtgacaactttctctctcatactcacattatctttttactttctctcta--ttgctttgatttttgtgtcactacct 37700075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 35529389 - 35529323
Alignment:
Q  36 cacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||||| || || |||||||||||| |||||| ||| ||||| |  |||||||||||||||||||||    
T  35529389 cacattctctttttactttctctctccattgcgttggtttttatgccactacctaaatttctttgta 35529323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 41070897 - 41070951
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    |||||||||| |  ||||||||||||||| | ||| |||||||||||||||||||    
T  41070897 tactttctctatctattgctttgatttttatgtcaatacctaaatttctttgtat 41070951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 33100849 - 33100922
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacct 89  Q
    |||| |||||||||  ||| |||||| || || ||||||||||||  |||| |||||||||||| |||||||||    
T  33100849 acaactttctctctcatactcacattatctttttactttctctctctattgttttgatttttgtgtcactacct 33100922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 45333785 - 45333838
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    ||||||||||||  ||||||||||||||||| ||||||||| | || |||||||    
T  45333785 tactttctctctttattgctttgatttttgtgtcactacctcatttcctttgta 45333838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 8514 - 8656
Alignment:
Q  16 acaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtc 115  Q
    |||| |||||||||  ||| ||||||||||||||||||||||| |  ||||||||||||||||| |||| | |||||||||||| ||| ||||  |||||    
T  8514 acaactttctctctcatactcacattgtccttctactttctctttctattgctttgatttttgtgtcaccaactaaatttctttatataatttagttgtc 8613  T
Q  116 taataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    ||| | ||| ||||||||||   ||||||||||||||||||||    
T  8614 taacaagttgtcacaagaaatagttgttcaaataacattgctc 8656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 1673 - 1828
Alignment:
Q  3 aacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgta 102  Q
    |||||||||||  ||||||||||||||  ||| | |||| || || ||||||||||||  |||||||||||||||||  ||||| |||||||||||||||    
T  1673 aacaacttttgtgacaattttctctctcatactctcattatcattttactttctctctttattgctttgatttttgtgccactatctaaatttctttgta 1772  T
Q  103 ttatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctc 158  Q
    | ||||  ||||| || ||||| || ||||||| | ||||||| ||||||||||||    
T  1773 taatttagttgtccaaaaggttgtcgcaagaaatggttgttcacataacattgctc 1828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 10966 - 11120
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtat 103  Q
    ||||||||||  |||| |||||||||  ||| |||||| || || |||| ||||||||  ||||||||||||||||  ||||| ||||||||||||||||    
T  10966 acaacttttgtgacaactttctctctcatactcacattatcattttactctctctcta--ttgctttgatttttgtgccactaactaaatttctttgtat 11063  T
Q  104 tatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctcta 160  Q
     ||||  ||||| || ||||| ||| |||||| | ||||||||||||||||||||||    
T  11064 aatttagttgtcgaaaaggttttcaaaagaaagggttgttcaaataacattgctcta 11120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 6564 - 6406
Alignment:
Q  1 ttaacaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttg 100  Q
    |||||||||||||  |||| ||| |||||  ||| |||||||| ||||||||||||||||  ||| ||||||||||||| |||||| ||||||  |||||    
T  6564 ttaacaacttttgtgacaactttatctctcatactcacattgttcttctactttctctctctattactttgatttttgtgtcactatctaaatccctttg 6465  T
Q  101 tattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgctct 159  Q
    |||  |||| |||| ||| | ||| | |||| ||||| ||||||||||| |||||||||    
T  6464 tatagtttggttgtataagaagttgtaacaataaaaggttgttcaaatagcattgctct 6406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 101947 - 101790
Alignment:
Q  4 acaacttttgcaacaattttctctcttttacccacattgtccttctactttctctctac------attgctttgatttttgtatcactacctaaatttct 97  Q
    ||||||||||  |||| |||||||||  ||| ||||||||||||||| |||||||||        ||||||||||||||| | |||||||||||||||||    
T  101947 acaacttttgtgacaactttctctctcatactcacattgtccttctattttctctctctctctctattgctttgatttttatgtcactacctaaatttct 101848  T
Q  98 ttgtattatttgattgtctaataggttatcacaagaaaagattgttcaaataacattgc 156  Q
    |||||| ||||| ||||| || | ||| |||||||||| | |||| |||||||||||||    
T  101847 ttgtataatttggttgtc-aacaagttgtcacaagaaagggttgtgcaaataacattgc 101790  T

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Target: scaffold0184 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 13563 - 13444
Alignment:
Q  39 attgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaaga 138  Q
    |||||| ||||||||||||| |  ||| ||| ||||||||||||||| ||||||||||||||||| ||||  ||||| |||| ||| |||||| ||||||    
T  13563 attgtctttctactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaa-aaaaga 13465  T
Q  139 -ttgttcaaataacattgctc 158  Q
     ||||| ||||||||||||||    
T  13464 gttgtttaaataacattgctc 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 59281 - 59400
Alignment:
Q  39 attgtccttctactttctctctacattgctttgatttttgtatcactacctaaatttctttgtattatttgattgtctaataggttatcacaagaaaaga 138  Q
    |||||| ||||||||||||| |  ||| ||| ||||||||||||||| ||||||||||||||||| ||||  ||||| |||| ||| |||||| ||||||    
T  59281 attgtctttctactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaa-aaaaga 59379  T
Q  139 -ttgttcaaataacattgctc 158  Q
     ||||| ||||||||||||||    
T  59380 gttgtttaaataacattgctc 59400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 28366 - 28295
Alignment:
Q  6 aacttttgcaacaattttctctcttttacccacattgtccttctactttctctctacattgctttgattttt 77  Q
    ||||||||  |||| |||||||||  ||| |||||||| ||||||||||||||||  ||| |||||||||||    
T  28366 aacttttgtgacaactttctctctcatacacacattgttcttctactttctctctctattactttgattttt 28295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 469634 - 469594
Alignment:
Q  49 tactttctctctacattgctttgatttttgtatcactacct 89  Q
    |||||||||||| |||| ||||||||||||||||| |||||    
T  469634 tactttctctctccattactttgatttttgtatcaatacct 469594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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