View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_15 (Length: 306)
Name: NF12331_low_15
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 63 - 299
Target Start/End: Complemental strand, 12866619 - 12866383
Alignment:
| Q |
63 |
taccagttttccttcttgaagatttgtttgaagaataatcttgaaaaagtggacaccaatattccgatgattaagttcttgagaagacatagttctagtt |
162 |
Q |
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| T |
12866619 |
taccagttttccttcttgaagatttgtttgaagaataatcttgaaaaagtggacaccaatattccgatgattaagttcttgacaagacatagttctagtt |
12866520 |
T |
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| Q |
163 |
tcttcaaccgaagaaaactatgtagagtgagatttttagtggaaaagaagggtttgatatatcaatgcacagttgcacatattgatggtcaattattatt |
262 |
Q |
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| T |
12866519 |
tcttcaaccgaagaaaactatgtagagtgagtttttaagtggaaaagaagggtttgatatatcaatgcacagttgcacatattgatggtcagttattatt |
12866420 |
T |
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| Q |
263 |
attttttgacaaaattgatggtcaatcacaggttctg |
299 |
Q |
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| T |
12866419 |
atattttgacaaaattgatggtcaattataggttctg |
12866383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12866651 - 12866618
Alignment:
| Q |
1 |
attaatacaacaataaacttattttagtgtgata |
34 |
Q |
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| T |
12866651 |
attaatacaacaataatcttattttagtgtgata |
12866618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 49742249 - 49742087
Alignment:
| Q |
62 |
ttaccagttttccttcttgaagatttgtttgaagaataatcttgaaaaagtggacaccaatattccgatgattaagttcttgagaagacatagttctagt |
161 |
Q |
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| T |
49742249 |
ttaccagttttccttcattaaggttcctttgaagaataatcttgaaaaagtggacaccattactccgatgatcaagttctgtagaagacatagctctaac |
49742150 |
T |
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| Q |
162 |
ttcttcaaccgaagaaaactatgtagagtgagatttttagtggaaaagaagggtttgatatat |
224 |
Q |
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| T |
49742149 |
cttttctacggaccaaaactattttgagcgagtgttttagtgaaaaagaagggtgttatatat |
49742087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 15133521 - 15133431
Alignment:
| Q |
62 |
ttaccagttttccttcttgaagatttgtttgaagaataatcttgaaaaagtggacaccaatattccgatgattaagttcttgagaagacat |
152 |
Q |
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| T |
15133521 |
ttaccagttttccttcttgaaggatacttgcaagaataattttgaaaaagtggacaccattgttctgatgttcaagttcttgagaagacat |
15133431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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