View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_18 (Length: 283)
Name: NF12331_low_18
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 7278942 - 7279113
Alignment:
| Q |
11 |
atcatcaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaaga |
110 |
Q |
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| T |
7278942 |
atcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaaga |
7279041 |
T |
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| Q |
111 |
agcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
182 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7279042 |
agcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7279113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 7374897 - 7374726
Alignment:
| Q |
11 |
atcatcaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaaga |
110 |
Q |
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|||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
7374897 |
atcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaaga |
7374798 |
T |
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| Q |
111 |
agcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
182 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7374797 |
agcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7374726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 5848215 - 5848125
Alignment:
| Q |
91 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
182 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctc-cttttcatcatcttcacagtttct |
5848125 |
T |
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