View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_19 (Length: 273)
Name: NF12331_low_19
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 46428276 - 46428021
Alignment:
| Q |
1 |
acgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgc |
100 |
Q |
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| T |
46428276 |
acgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgc |
46428177 |
T |
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| Q |
101 |
cccctactttttgtttcttaacaacatcattcttgcttgtcatataaggctctcgctctgtggctcctaattcttgtttcttggcaacttcgttcttgtt |
200 |
Q |
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| T |
46428176 |
cccctattttttgtttattaacaacatcattcttgcttgtcatataaggctctcgctccgtggcccctaattcttgtttcttggcaacttcgttcttgtt |
46428077 |
T |
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| Q |
201 |
tcttgcacgacaaacatcacgaaactttctctttgtgcttcttactttctgcctct |
256 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46428076 |
tcttgcacgacgaacatcacgaaactttctctttgtgcttcttactttctgcctct |
46428021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 46027959 - 46027825
Alignment:
| Q |
1 |
acgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgc |
100 |
Q |
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| T |
46027959 |
acgaagtacatgttaacctaaattaatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactttctcctcttcgcactgtgc |
46027860 |
T |
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| Q |
101 |
cccctactttttgtttcttaacaacatcattcttg |
135 |
Q |
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| T |
46027859 |
cccctactttttgtttcttaacaacatcattcttg |
46027825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 46027788 - 46027667
Alignment:
| Q |
133 |
ttgcttgtcatataaggctctcgctctgtggctcctaattcttgtttcttggcaacttcgttcttgtttcttgcacgacaaacat------cacgaaact |
226 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
46027788 |
ttgcttgtcaagcaaggctctcgctctgtggcccctaattcttgtttcttagcaacttcgttcttgtttcttgcacgacgaacatacaccacacgaaact |
46027689 |
T |
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| Q |
227 |
ttctctttgtgcttcttacttt |
248 |
Q |
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|||||||||||||||||||||| |
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| T |
46027688 |
ttctctttgtgcttcttacttt |
46027667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46015914 - 46015825
Alignment:
| Q |
1 |
acgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt |
90 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |||| |
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| T |
46015914 |
acgaagtacatgttaacccaaattaatataactgcaaagaacatatcaatacatcattacagcattgagtaaaacttacttgctcttttt |
46015825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 46028379 - 46028345
Alignment:
| Q |
56 |
attacagcattgagtaaaacttactttctcctttt |
90 |
Q |
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| T |
46028379 |
attacagcattgagtaaaacttactttctcctttt |
46028345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 46015789 - 46015755
Alignment:
| Q |
183 |
ggcaacttcgttcttgtttcttgcacgacaaacat |
217 |
Q |
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| T |
46015789 |
ggcaacttcgttcttgtttcttgcacgacgaacat |
46015755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 46021265 - 46021197
Alignment:
| Q |
9 |
catgttaacccaaattaatttaactgcaaagaacatatcaat--atac--cattacagcattgagtaaa |
73 |
Q |
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| T |
46021265 |
catgttaactcaaattaatttaactgcaaataatatattaattaatacaacattacagcattgagtaaa |
46021197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 3802349 - 3802384
Alignment:
| Q |
56 |
attacagcattgagtaaaacttactttctccttttc |
91 |
Q |
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| T |
3802349 |
attacagcattgagtaaaacttactttctccttttc |
3802384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 3803594 - 3803650
Alignment:
| Q |
34 |
gcaaagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt |
90 |
Q |
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|||||||||||| | || | |||||| ||||||||||||||||||||||||||||| |
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| T |
3803594 |
gcaaagaacatagtattacaacattacggcattgagtaaaacttactttctcctttt |
3803650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 50669270 - 50669223
Alignment:
| Q |
22 |
attaatttaactgcaaagaacatatcaatataccattacagcattgag |
69 |
Q |
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||||||| |||||||||||||| ||||||| | ||||||||||||||| |
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| T |
50669270 |
attaattcaactgcaaagaacacatcaatagaacattacagcattgag |
50669223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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