View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_21 (Length: 249)
Name: NF12331_low_21
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 10472697 - 10472796
Alignment:
| Q |
140 |
tgttatctgaaattaaactaaggaacacatgtgtaatttcgtcaaaaattatttagggggactagactaaaatttaagaaaggttatgcatgcctctctg |
239 |
Q |
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| T |
10472697 |
tgttatctgaaattaaactaaggaacacaggtgtaatttcgtcaaaaattatttagggggactagactaacatttaagaaaggttatgcatgcctctctg |
10472796 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10472558 - 10472640
Alignment:
| Q |
1 |
aaaaaatttacactctactaaatatactagcgtctgagaagtcaaaagaaaataaaatcatgaatttaaaacttgaatatccata |
85 |
Q |
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| T |
10472558 |
aaaaaatttacactctactaaata--ctagtgtccgagaagtcaaaagaaaataaaatcatgaatttaaaatttgaatattcata |
10472640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 38655154 - 38655106
Alignment:
| Q |
40 |
agtcaaaagaaaataaaatcatgaatttaaaacttgaatatccatatgc |
88 |
Q |
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| T |
38655154 |
agtcagaagaaaagaaaatcatgaatttgaaacttgaaaatcaatatgc |
38655106 |
T |
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